Wall clock time and date at job start Tue Mar 31 2020 20:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28649 * 124.72254 * 2 1 4 4 C 1.33558 * 115.76762 * 180.18431 * 3 2 1 5 5 C 1.47268 * 123.14069 * 179.82833 * 4 3 2 6 6 O 1.21630 * 119.99974 * 186.15597 * 5 4 3 7 7 N 1.34774 * 119.99787 * 6.14998 * 5 4 3 8 8 C 1.43505 * 122.54833 * 176.58638 * 7 5 4 9 9 C 1.51725 * 114.26135 * 122.92512 * 8 7 5 10 10 C 1.51148 * 111.88746 * 82.63986 * 9 8 7 11 11 H 1.09000 * 110.23216 * 34.32223 * 10 9 8 12 12 C 1.53399 * 110.93367 * 156.75257 * 10 9 8 13 13 N 1.46599 * 108.10866 * 102.74141 * 12 10 9 14 14 C 1.36938 * 125.31671 * 178.65505 * 13 12 10 15 15 H 1.08005 * 119.99772 * 350.20574 * 14 13 12 16 16 C 1.38806 * 120.00361 * 170.20729 * 14 13 12 17 17 N 1.31623 * 119.99863 * 346.15684 * 16 14 13 18 18 Si 1.86805 * 120.00428 * 166.15503 * 16 14 13 19 19 H 1.48498 * 109.46908 * 94.97333 * 18 16 14 20 20 H 1.48500 * 109.47278 * 214.97260 * 18 16 14 21 21 H 1.48496 * 109.47082 * 334.97206 * 18 16 14 22 22 C 1.46658 * 109.36960 * 358.65574 * 13 12 10 23 23 C 1.54199 * 106.89483 * 18.24947 * 22 13 12 24 24 H 1.09000 * 111.45529 * 91.58343 * 23 22 13 25 25 C 1.51856 * 109.36602 * 214.10114 * 23 22 13 26 26 C 1.49544 * 122.55149 * 356.56202 * 7 5 4 27 27 C 1.35208 * 113.71589 * 359.56205 * 4 3 2 28 28 S 1.70769 * 124.71994 * 179.72599 * 2 1 3 29 29 H 1.09000 * 109.46976 * 180.24290 * 1 2 3 30 30 H 1.08996 * 109.47627 * 300.24552 * 1 2 3 31 31 H 1.09007 * 109.46662 * 60.24952 * 1 2 3 32 32 H 1.09004 * 108.52801 * 244.16281 * 8 7 5 33 33 H 1.08997 * 108.53006 * 1.68555 * 8 7 5 34 34 H 1.08996 * 108.99992 * 203.26631 * 9 8 7 35 35 H 1.09009 * 108.99270 * 322.10504 * 9 8 7 36 36 H 1.08997 * 109.74554 * 222.42021 * 12 10 9 37 37 H 1.09007 * 109.74364 * 343.07182 * 12 10 9 38 38 H 0.96998 * 120.00093 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.97154 * 137.64173 * 22 13 12 40 40 H 1.09001 * 109.96745 * 258.87236 * 22 13 12 41 41 H 1.09003 * 109.00311 * 54.39063 * 25 23 22 42 42 H 1.08998 * 109.00892 * 295.52169 * 25 23 22 43 43 H 1.09004 * 110.26131 * 131.26005 * 26 7 5 44 44 H 1.09001 * 110.39328 * 9.22690 * 26 7 5 45 45 H 1.08003 * 125.58493 * 180.26900 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5591 0.8495 -0.0039 5 6 4.5463 1.9423 -0.0082 6 8 5.7307 1.6914 -0.1245 7 7 4.1373 3.2204 0.1167 8 6 5.0552 4.3210 0.1912 9 6 4.8462 5.3803 -0.8748 10 6 3.7540 6.3537 -0.4953 11 1 3.7519 6.5165 0.5824 12 6 3.9273 7.6870 -1.2338 13 7 2.9591 7.7279 -2.3338 14 6 2.7926 8.7724 -3.2036 15 1 3.2856 9.7150 -3.0162 16 6 1.9904 8.6199 -4.3260 17 7 1.6123 7.4179 -4.7063 18 14 1.4474 10.1206 -5.2970 19 1 2.3811 10.3412 -6.4304 20 1 0.0755 9.9011 -5.8214 21 1 1.4538 11.3123 -4.4110 22 6 2.1964 6.4754 -2.3573 23 6 2.3742 5.8165 -0.9745 24 1 1.5851 6.1171 -0.2853 25 6 2.3946 4.3066 -1.1351 26 6 2.6925 3.5995 0.1877 27 6 3.9036 -0.4579 0.0023 28 16 2.4796 -1.4036 0.0067 29 1 -0.3633 -1.0277 0.0044 30 1 -0.3634 0.5176 0.8877 31 1 -0.3633 0.5100 -0.8923 32 1 4.9548 4.7901 1.1700 33 1 6.0696 3.9329 0.0996 34 1 5.7771 5.9291 -1.0170 35 1 4.5755 4.8925 -1.8114 36 1 3.7417 8.5143 -0.5488 37 1 4.9397 7.7588 -1.6316 38 1 1.0514 7.3113 -5.4904 39 1 1.1422 6.6848 -2.5377 40 1 2.5838 5.8183 -3.1358 41 1 3.1609 4.0373 -1.8620 42 1 1.4238 3.9757 -1.5038 43 1 2.5205 4.2763 1.0247 44 1 2.0708 2.7099 0.2885 45 1 4.9131 -0.8418 0.0047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946728362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:52 Heat of formation + Delta-G solvation = 30.199030 kcal Electronic energy + Delta-G solvation = -27448.596796 eV Core-core repulsion = 23786.205461 eV Total energy + Delta-G solvation = -3662.391335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.98601 -40.64831 -39.51044 -37.30714 -34.85676 -33.58909 -33.21684 -32.51349 -29.38444 -29.26464 -28.95013 -26.74835 -25.72219 -24.12698 -23.63165 -22.04518 -21.64228 -20.64491 -19.72207 -19.51468 -18.89379 -17.41844 -17.27378 -16.89614 -16.78048 -16.22549 -16.01186 -15.80009 -15.37371 -15.00744 -14.93442 -14.58958 -14.49821 -14.18295 -13.93312 -13.61671 -13.42267 -13.32939 -13.23857 -13.00448 -12.95994 -12.84149 -12.69572 -12.49633 -12.35297 -12.08198 -11.87778 -11.77216 -11.48552 -11.37873 -11.17363 -11.04862 -10.65661 -10.64304 -10.12269 -9.95454 -9.59550 -8.84693 -7.89441 -5.23168 -0.49087 0.27713 0.58724 0.85664 1.43801 1.45314 1.55775 2.00830 2.23224 2.48941 2.92042 3.27923 3.58534 3.68579 3.75789 3.79811 3.96411 4.06623 4.12642 4.22769 4.24753 4.38745 4.46673 4.53914 4.63841 4.70752 4.73405 4.77801 4.78751 4.85282 4.91417 5.02760 5.04796 5.11020 5.17874 5.21938 5.30583 5.36874 5.48294 5.56496 5.69528 5.70496 5.79872 6.20521 6.28796 6.46603 7.02800 7.09118 7.79351 8.43874 9.22182 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.003006 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.309116 B = 9312.051163 C =10297.996893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.015 3.985 3 N -0.462 5.462 4 C -0.008 4.008 5 C 0.588 3.412 6 O -0.579 6.579 7 N -0.589 5.589 8 C 0.114 3.886 9 C -0.115 4.115 10 C -0.077 4.077 11 H 0.103 0.897 12 C 0.134 3.866 13 N -0.623 5.623 14 C -0.249 4.249 15 H 0.078 0.922 16 C -0.064 4.064 17 N -0.946 5.946 18 Si 0.976 3.024 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.196 3.804 23 C -0.094 4.094 24 H 0.083 0.917 25 C -0.107 4.107 26 C 0.081 3.919 27 C -0.243 4.243 28 S 0.298 5.702 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.016 0.984 38 H 0.247 0.753 39 H 0.011 0.989 40 H -0.009 1.009 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.160 0.840 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -20.734 15.645 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.263 4.263 3 N -0.179 5.179 4 C -0.142 4.142 5 C 0.376 3.624 6 O -0.460 6.460 7 N -0.318 5.318 8 C -0.009 4.009 9 C -0.153 4.153 10 C -0.096 4.096 11 H 0.121 0.879 12 C 0.009 3.991 13 N -0.348 5.348 14 C -0.378 4.378 15 H 0.096 0.904 16 C -0.257 4.257 17 N -0.594 5.594 18 Si 0.804 3.196 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.192 1.192 22 C 0.071 3.929 23 C -0.114 4.114 24 H 0.101 0.899 25 C -0.145 4.145 26 C -0.041 4.041 27 C -0.386 4.386 28 S 0.557 5.443 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.009 0.991 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.176 0.824 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.601 -21.378 15.428 26.492 hybrid contribution 0.770 2.016 -1.418 2.582 sum -1.831 -19.362 14.009 23.969 Atomic orbital electron populations 1.20675 0.82242 1.05725 1.05373 1.27993 1.04095 0.92063 1.02131 1.66598 1.02650 1.30990 1.17686 1.20139 0.90186 0.93291 1.10602 1.17421 0.86653 0.82235 0.76099 1.90756 1.18045 1.83945 1.53290 1.47864 1.09819 1.04705 1.69446 1.20616 0.93914 0.87053 0.99360 1.21345 0.98962 0.96414 0.98597 1.21726 0.94295 0.93350 1.00217 0.87871 1.21371 0.91953 0.96309 0.89465 1.44537 1.40365 1.16598 1.33341 1.19407 1.25756 0.91135 1.01525 0.90417 1.25670 1.02006 0.99425 0.98615 1.70225 1.40770 1.21735 1.26681 0.85107 0.77101 0.79079 0.78299 1.21440 1.21710 1.19242 1.20789 0.93734 0.85919 0.92468 1.22276 0.97244 0.95067 0.96780 0.89910 1.21631 1.01299 0.93484 0.98117 1.23625 0.79938 1.04021 0.96472 1.26809 1.08126 0.96873 1.06797 1.82514 0.91189 1.08559 1.62076 0.87334 0.88131 0.89101 0.89524 0.90911 0.90612 0.93894 0.95135 0.96640 0.94378 0.97056 0.99058 0.93840 0.91774 0.89593 0.82398 0.79185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.47 71.24 0.75 0.12 16 2 C 0.02 0.22 7.34 88.57 0.65 0.87 16 3 N -0.46 -10.22 6.74 -180.83 -1.22 -11.44 16 4 C -0.01 -0.20 6.58 40.56 0.27 0.07 16 5 C 0.59 18.63 7.72 86.62 0.67 19.30 16 6 O -0.58 -21.40 16.23 -4.13 -0.07 -21.47 16 7 N -0.59 -17.36 2.61 -827.84 -2.16 -19.53 16 8 C 0.11 3.27 5.74 86.51 0.50 3.76 16 9 C -0.11 -3.78 4.77 29.57 0.14 -3.64 16 10 C -0.08 -2.62 2.78 -10.36 -0.03 -2.65 16 11 H 0.10 2.82 7.68 -2.39 -0.02 2.80 16 12 C 0.13 5.73 6.82 86.49 0.59 6.32 16 13 N -0.62 -33.50 3.38 -698.24 -2.36 -35.86 16 14 C -0.25 -14.58 10.19 84.03 0.86 -13.73 16 15 H 0.08 4.37 7.87 -2.91 -0.02 4.35 16 16 C -0.06 -3.75 5.35 84.86 0.45 -3.29 16 17 N -0.95 -58.97 10.79 21.65 0.23 -58.73 16 18 Si 0.98 46.98 29.58 68.60 2.03 49.01 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 C 0.20 10.03 4.85 86.76 0.42 10.45 16 23 C -0.09 -3.49 2.93 -9.86 -0.03 -3.52 16 24 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 25 C -0.11 -3.52 4.50 30.19 0.14 -3.39 16 26 C 0.08 2.12 5.95 85.76 0.51 2.63 16 27 C -0.24 -4.76 10.62 67.12 0.71 -4.05 16 28 S 0.30 3.35 22.90 -56.49 -1.29 2.06 16 29 H 0.11 0.22 8.12 -2.39 -0.02 0.20 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.09 2.04 7.68 -2.39 -0.02 2.02 16 33 H 0.07 2.22 6.99 -2.39 -0.02 2.20 16 34 H 0.08 2.41 7.53 -2.39 -0.02 2.39 16 35 H 0.04 1.71 5.86 -2.38 -0.01 1.69 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.02 0.68 7.40 -2.38 -0.02 0.67 16 38 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.01 0.63 7.36 -2.39 -0.02 0.62 16 40 H -0.01 -0.50 7.32 -2.39 -0.02 -0.52 16 41 H 0.04 1.69 5.47 -2.39 -0.01 1.68 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.09 1.98 7.81 -2.38 -0.02 1.96 16 44 H 0.16 3.92 3.99 -45.79 -0.18 3.74 16 45 H 0.19 3.48 8.04 -2.91 -0.02 3.45 16 Total: -1.00 -77.99 358.31 2.59 -75.41 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.83 Total: 11.28 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.59 Total: 9.28 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -5.51 Total: -125.56 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.07 Total: -21.47 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.29 Total: 2.06 kcal Total: -77.99 2.59 -75.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946728362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.606 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds