Wall clock time and date at job start Tue Mar 31 2020 18:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 113.19642 * 2 1 4 4 C 1.55784 * 114.07890 * 132.67258 * 2 1 3 5 5 H 1.08995 * 114.13167 * 36.91170 * 4 2 1 6 6 N 1.46506 * 114.12191 * 264.53068 * 4 2 1 7 7 C 1.34785 * 119.99631 * 155.00326 * 6 4 2 8 8 O 1.21682 * 119.99970 * 0.02562 * 7 6 4 9 9 C 1.46676 * 119.99821 * 179.97438 * 7 6 4 10 10 C 1.35660 * 126.12845 * 179.71439 * 9 7 6 11 11 N 1.30947 * 114.19002 * 179.82680 * 10 9 7 12 12 C 1.29425 * 117.36428 * 0.48095 * 11 10 9 13 13 S 1.70959 * 110.39232 * 359.73389 * 12 11 10 14 14 C 1.50013 * 83.86145 * 150.81448 * 4 2 1 15 15 H 1.08997 * 112.50900 * 76.11950 * 14 4 2 16 16 C 1.51203 * 126.16199 * 218.52264 * 14 4 2 17 17 C 1.54091 * 106.19670 * 161.40985 * 16 14 4 18 18 C 1.52500 * 112.67278 * 304.55532 * 17 16 14 19 19 N 1.48401 * 111.86635 * 46.79253 * 18 17 16 20 20 C 1.36933 * 123.17114 * 128.15937 * 19 18 17 21 21 H 1.08004 * 120.00440 * 225.99017 * 20 19 18 22 22 C 1.38808 * 119.99985 * 45.98584 * 20 19 18 23 23 N 1.31618 * 120.00184 * 207.23874 * 22 20 19 24 24 Si 1.86802 * 120.00069 * 27.23889 * 22 20 19 25 25 H 1.48497 * 109.47283 * 84.78996 * 24 22 20 26 26 H 1.48494 * 109.47257 * 204.79045 * 24 22 20 27 27 H 1.48504 * 109.47016 * 324.78982 * 24 22 20 28 28 C 1.45383 * 113.66403 * 308.15847 * 19 18 17 29 29 H 1.08993 * 112.09126 * 301.19412 * 28 19 18 30 30 H 1.08997 * 109.47155 * 306.83500 * 1 2 3 31 31 H 1.09004 * 109.46717 * 66.83412 * 1 2 3 32 32 H 1.08999 * 109.47304 * 186.83253 * 1 2 3 33 33 H 1.08996 * 109.46835 * 199.38711 * 3 2 1 34 34 H 1.08994 * 109.46735 * 319.38787 * 3 2 1 35 35 H 1.09000 * 109.46979 * 79.38895 * 3 2 1 36 36 H 0.96998 * 119.99960 * 335.00400 * 6 4 2 37 37 H 1.07996 * 122.90831 * 0.02562 * 10 9 7 38 38 H 1.08004 * 124.80816 * 179.75635 * 12 11 10 39 39 H 1.09000 * 110.10511 * 42.23271 * 16 14 4 40 40 H 1.09000 * 110.19381 * 280.62492 * 16 14 4 41 41 H 1.09005 * 108.83943 * 183.73853 * 17 16 14 42 42 H 1.08995 * 108.76108 * 65.32215 * 17 16 14 43 43 H 1.09004 * 109.00079 * 286.17918 * 18 17 16 44 44 H 1.08992 * 108.93974 * 167.36746 * 18 17 16 45 45 H 0.97006 * 119.99931 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1327 1.4064 0.0000 4 6 2.1656 -0.9640 1.0457 5 1 1.6213 -1.8990 1.1785 6 7 2.5262 -0.3207 2.3116 7 6 2.6001 -1.0514 3.4418 8 8 2.3678 -2.2454 3.4106 9 6 2.9617 -0.4074 4.7090 10 6 3.0671 -1.0188 5.9154 11 7 3.4091 -0.2191 6.8943 12 6 3.5922 1.0293 6.6061 13 16 3.3297 1.3006 4.9387 14 6 3.2890 -1.0394 0.0544 15 1 3.9181 -0.1494 0.0682 16 6 4.0875 -2.2744 -0.2969 17 6 4.7656 -1.9777 -1.6484 18 6 3.7688 -1.5766 -2.7307 19 7 2.8027 -0.5610 -2.2434 20 6 2.5568 0.6150 -2.9003 21 1 2.5212 1.5437 -2.3502 22 6 2.3533 0.6135 -4.2734 23 7 2.6445 1.6831 -4.9830 24 14 1.6661 -0.9065 -5.1141 25 1 0.1835 -0.8893 -5.0333 26 1 2.0841 -0.9156 -6.5390 27 1 2.1846 -2.1230 -4.4384 28 6 2.1420 -0.9322 -1.0027 29 1 1.5933 -1.8694 -1.0950 30 1 -0.3633 0.6161 0.8225 31 1 -0.3633 0.4043 -0.9449 32 1 -0.3634 -1.0203 0.1223 33 1 3.1668 1.3584 -0.3411 34 1 1.5587 2.0475 -0.6689 35 1 2.1018 1.8148 1.0101 36 1 2.7118 0.6311 2.3363 37 1 2.8877 -2.0745 6.0559 38 1 3.8717 1.7918 7.3182 39 1 3.4249 -3.1348 -0.3910 40 1 4.8417 -2.4647 0.4667 41 1 5.3017 -2.8684 -1.9763 42 1 5.4812 -1.1672 -1.5111 43 1 3.2206 -2.4616 -3.0538 44 1 4.3150 -1.1679 -3.5807 45 1 2.5026 1.6819 -5.9426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087272021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:40 Heat of formation + Delta-G solvation = 80.230643 kcal Electronic energy + Delta-G solvation = -27715.054606 eV Core-core repulsion = 24054.832805 eV Total energy + Delta-G solvation = -3660.221801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18159 -40.13629 -38.71172 -35.54323 -33.47350 -33.03557 -31.09315 -30.66333 -29.52222 -27.29767 -26.65331 -25.79171 -24.67669 -22.59461 -21.94872 -20.38943 -20.28438 -19.68181 -19.23720 -18.21416 -16.85459 -16.79534 -16.00776 -15.44173 -15.21752 -14.96902 -14.33731 -14.26161 -14.20467 -14.08923 -13.91987 -13.45229 -13.38214 -13.06359 -12.78512 -12.52442 -12.11554 -11.93488 -11.76482 -11.70037 -11.41065 -11.20697 -11.08774 -10.73134 -10.52187 -10.48688 -10.45132 -10.26241 -10.15029 -9.93238 -9.87612 -9.65567 -9.61924 -9.41775 -9.02405 -8.77064 -8.33697 -6.52917 -6.07103 -3.52215 -0.05457 0.85888 1.24481 2.21194 3.04707 3.06381 3.37914 3.48388 3.53074 3.93869 4.52425 4.58505 4.64991 4.75804 4.81209 4.98512 5.01103 5.09901 5.22961 5.49688 5.57092 5.68622 5.73809 5.78731 5.84391 5.93180 5.97119 6.00926 6.10337 6.24660 6.33738 6.36980 6.40668 6.45658 6.51611 6.57587 6.61594 6.73233 6.84770 6.88551 6.92452 7.10272 7.21643 7.45816 8.01021 8.06433 8.44468 8.93188 9.67495 10.27191 11.07854 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.003274 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.607141 B = 8548.871852 C = 8925.421151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.119 4.119 4 C 0.139 3.861 5 H 0.118 0.882 6 N -0.704 5.704 7 C 0.593 3.407 8 O -0.528 6.528 9 C -0.282 4.282 10 C 0.110 3.890 11 N -0.476 5.476 12 C 0.028 3.972 13 S 0.169 5.831 14 C -0.169 4.169 15 H 0.096 0.904 16 C -0.089 4.089 17 C -0.131 4.131 18 C 0.139 3.861 19 N -0.579 5.579 20 C -0.269 4.269 21 H 0.083 0.917 22 C 0.049 3.951 23 N -0.891 5.891 24 Si 0.852 3.148 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.256 1.256 28 C 0.149 3.851 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.397 0.603 37 H 0.189 0.811 38 H 0.205 0.795 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.063 0.937 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -0.441 18.870 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 C -0.176 4.176 4 C 0.035 3.965 5 H 0.135 0.865 6 N -0.354 5.354 7 C 0.377 3.623 8 O -0.406 6.406 9 C -0.407 4.407 10 C -0.047 4.047 11 N -0.189 5.189 12 C -0.267 4.267 13 S 0.423 5.577 14 C -0.190 4.190 15 H 0.114 0.886 16 C -0.127 4.127 17 C -0.170 4.170 18 C 0.015 3.985 19 N -0.302 5.302 20 C -0.397 4.397 21 H 0.100 0.900 22 C -0.154 4.154 23 N -0.530 5.530 24 Si 0.680 3.320 25 H -0.215 1.215 26 H -0.226 1.226 27 H -0.181 1.181 28 C 0.041 3.959 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.233 0.767 37 H 0.205 0.795 38 H 0.222 0.778 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.297 -0.378 18.532 18.581 hybrid contribution -0.421 -1.166 -0.475 1.327 sum 0.876 -1.544 18.057 18.144 Atomic orbital electron populations 1.21717 0.94288 1.01194 1.01934 1.21821 0.94897 0.95445 0.94050 1.21631 1.02639 0.93951 0.99372 1.22571 0.97535 0.97141 0.79240 0.86473 1.46007 1.69426 1.12032 1.07905 1.16740 0.77384 0.86328 0.81808 1.90835 1.50078 1.13984 1.85706 1.25974 1.17102 0.97227 1.00363 1.22262 0.95586 1.01580 0.85271 1.66267 1.15432 1.02631 1.34601 1.28822 1.02239 0.97064 0.98551 1.84100 1.60195 1.06104 1.07338 1.23406 0.97744 0.99714 0.98181 0.88574 1.21104 0.98471 0.96846 0.96253 1.21957 0.99002 1.00054 0.95998 1.21410 0.90283 0.91998 0.94825 1.44000 1.41249 1.19783 1.25204 1.18722 1.46067 0.84768 0.90109 0.90020 1.25785 0.96856 0.95730 0.97006 1.69955 1.46235 1.30258 1.06569 0.87286 0.80424 0.86180 0.78114 1.21479 1.22621 1.18053 1.21501 0.92459 0.95098 0.86889 0.92981 0.93298 0.91496 0.93010 0.90682 0.90950 0.94671 0.76664 0.79451 0.77812 0.92633 0.93536 0.92988 0.92554 0.95631 0.91834 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.21 37.16 0.34 -1.64 16 2 C -0.06 -0.96 1.36 -159.14 -0.22 -1.18 16 3 C -0.12 -1.85 6.88 37.16 0.26 -1.59 16 4 C 0.14 2.07 3.54 -71.82 -0.25 1.81 16 5 H 0.12 1.86 7.40 -51.93 -0.38 1.47 16 6 N -0.70 -9.13 5.32 -58.96 -0.31 -9.45 16 7 C 0.59 8.18 7.79 -12.85 -0.10 8.08 16 8 O -0.53 -8.93 16.46 5.20 0.09 -8.85 16 9 C -0.28 -3.17 6.48 -37.10 -0.24 -3.41 16 10 C 0.11 1.21 11.09 -18.85 -0.21 1.00 16 11 N -0.48 -4.90 10.51 -15.38 -0.16 -5.06 16 12 C 0.03 0.21 12.22 51.75 0.63 0.84 16 13 S 0.17 1.33 22.35 -107.50 -2.40 -1.08 16 14 C -0.17 -2.76 2.84 -95.81 -0.27 -3.03 16 15 H 0.10 1.66 6.08 -51.93 -0.32 1.35 16 16 C -0.09 -1.44 6.12 -27.07 -0.17 -1.60 16 17 C -0.13 -2.23 5.90 -26.42 -0.16 -2.39 16 18 C 0.14 2.87 4.53 -3.25 -0.01 2.85 16 19 N -0.58 -12.68 2.24 -169.42 -0.38 -13.06 16 20 C -0.27 -6.86 9.22 -15.06 -0.14 -7.00 16 21 H 0.08 2.19 5.59 -52.48 -0.29 1.90 16 22 C 0.05 1.33 5.15 -17.43 -0.09 1.24 16 23 N -0.89 -25.88 13.97 55.49 0.78 -25.11 16 24 Si 0.85 20.95 27.43 -169.99 -4.66 16.28 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.26 -5.97 4.80 56.52 0.27 -5.70 16 28 C 0.15 2.76 3.02 -72.13 -0.22 2.54 16 29 H 0.05 1.00 7.97 -51.93 -0.41 0.58 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.07 1.31 5.65 -51.93 -0.29 1.01 16 34 H 0.07 1.25 7.33 -51.93 -0.38 0.87 16 35 H 0.03 0.43 6.61 -51.93 -0.34 0.09 16 36 H 0.40 4.48 5.97 -40.82 -0.24 4.24 16 37 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.54 6.41 -51.93 -0.33 0.21 16 44 H 0.06 1.41 7.41 -51.93 -0.38 1.02 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -30.69 360.33 -8.92 -39.61 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.45 Total: 4.74 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.84 Total: -3.47 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.08 Total: -52.67 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.66 Total: 16.28 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.40 Total: -1.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.69 -8.92 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.845 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds