Wall clock time and date at job start Tue Mar 31 2020 18:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47432 * 2 1 4 4 C 1.50707 * 109.47177 * 120.00003 * 2 1 3 5 5 C 1.38163 * 120.02715 * 299.98059 * 4 2 1 6 6 C 1.38243 * 120.05438 * 180.02562 * 5 4 2 7 7 C 1.38289 * 120.11362 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05159 * 0.02562 * 7 6 5 9 9 C 1.38708 * 120.02785 * 119.99964 * 4 2 1 10 10 O 1.35899 * 120.05461 * 359.95420 * 9 4 2 11 11 C 1.42903 * 116.99930 * 180.02562 * 10 9 4 12 12 C 1.50697 * 109.47103 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00131 * 0.02562 * 12 11 10 14 14 O 1.34238 * 120.00057 * 180.02562 * 12 11 10 15 15 C 1.45199 * 116.99773 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46761 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00027 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00408 * 179.97438 * 16 15 14 19 19 C 1.46493 * 120.00404 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47087 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00069 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00165 * 179.97438 * 20 19 18 23 23 N 1.31521 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47025 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47306 * 119.99566 * 24 22 20 27 27 H 1.48502 * 109.47260 * 240.00277 * 24 22 20 28 28 H 1.09004 * 109.47289 * 300.00150 * 1 2 3 29 29 H 1.09003 * 109.47159 * 59.99529 * 1 2 3 30 30 H 1.08998 * 109.47534 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47289 * 239.99850 * 2 1 3 32 32 H 1.08992 * 109.47221 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46746 * 300.00412 * 3 2 1 34 34 H 1.09002 * 109.46743 * 60.00150 * 3 2 1 35 35 H 1.08001 * 119.97024 * 0.03662 * 5 4 2 36 36 H 1.08004 * 119.94070 * 180.02562 * 6 5 4 37 37 H 1.07993 * 119.96940 * 180.28495 * 7 6 5 38 38 H 1.08000 * 120.02364 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47294 * 300.00489 * 11 10 9 40 40 H 1.08995 * 109.47056 * 60.00501 * 11 10 9 41 41 H 1.09001 * 109.47121 * 299.99714 * 15 14 12 42 42 H 1.09002 * 109.47461 * 60.00165 * 15 14 12 43 43 H 0.97003 * 119.99050 * 0.02562 * 18 16 15 44 44 H 1.09001 * 109.47099 * 299.99910 * 19 18 16 45 45 H 1.09002 * 109.46972 * 60.00049 * 19 18 16 46 46 H 0.96993 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6992 -0.2387 2.4856 6 6 2.1602 -0.8896 3.6148 7 6 2.9551 -2.0144 3.4913 8 6 3.2909 -2.4900 2.2387 9 6 2.8298 -1.8383 1.1039 10 8 3.1584 -2.3045 -0.1296 11 6 3.9824 -3.4708 -0.1840 12 6 4.2407 -3.8367 -1.6229 13 8 3.7680 -3.1672 -2.5107 14 8 4.9959 -4.9065 -1.9182 15 6 5.2029 -5.1989 -3.3253 16 6 6.0689 -6.4247 -3.4614 17 8 6.4715 -6.9959 -2.4701 18 7 6.3953 -6.8869 -4.6846 19 6 7.2366 -8.0788 -4.8169 20 6 7.4517 -8.3823 -6.2773 21 1 7.0059 -7.7508 -7.0314 22 6 8.2177 -9.4663 -6.6506 23 7 8.7610 -10.2351 -5.7323 24 14 8.4837 -9.8430 -8.4608 25 1 7.7706 -8.8351 -9.2861 26 1 9.9358 -9.7969 -8.7678 27 1 7.9554 -11.1965 -8.7677 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.0781 0.6393 2.5847 36 1 1.8983 -0.5194 4.5950 37 1 3.3101 -2.5238 4.3749 38 1 3.9113 -3.3688 2.1428 39 1 4.9303 -3.2696 0.3152 40 1 3.4766 -4.2967 0.3161 41 1 4.2405 -5.3785 -3.8045 42 1 5.6948 -4.3521 -3.8039 43 1 6.0729 -6.4303 -5.4774 44 1 8.1991 -7.8991 -4.3380 45 1 6.7449 -8.9256 -4.3380 46 1 9.3002 -10.9974 -5.9949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007431904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:51 Heat of formation + Delta-G solvation = -144.078997 kcal Electronic energy + Delta-G solvation = -27355.872805 eV Core-core repulsion = 23210.878586 eV Total energy + Delta-G solvation = -4144.994219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08422 -40.39811 -38.82649 -37.96536 -36.40602 -35.66795 -34.30439 -32.45605 -30.90047 -30.46128 -29.56701 -28.33819 -27.40535 -26.56743 -23.97650 -22.92083 -22.48098 -21.28549 -20.34186 -20.00974 -18.70652 -17.88792 -17.43279 -17.25784 -16.82449 -16.06089 -15.99938 -15.87351 -15.43948 -15.10580 -14.82753 -14.62565 -14.40586 -14.22388 -14.07384 -13.77907 -13.37412 -13.10774 -12.95899 -12.71841 -12.52557 -12.40214 -12.33099 -12.04870 -12.01116 -11.83595 -11.53006 -11.41757 -11.02287 -10.97861 -10.94947 -10.91200 -10.82184 -10.64295 -10.37659 -9.45912 -9.25678 -9.20234 -8.82348 -8.51887 -8.04221 -6.22880 -4.30386 0.95657 1.06832 1.72876 1.90198 3.10296 3.11763 3.20439 3.27935 3.30862 3.38581 3.85179 4.25570 4.29045 4.41428 4.47009 4.60125 4.60409 4.67666 4.81693 4.87345 4.93940 5.02579 5.04521 5.12938 5.15569 5.17198 5.26500 5.28744 5.34353 5.50952 5.54818 5.69026 5.77291 5.86185 5.97394 6.01394 6.13001 6.16236 6.24555 6.37565 6.93281 7.17673 7.24718 7.41413 7.47496 7.58317 7.88184 8.44308 8.66596 8.90661 9.36203 10.87266 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.001665 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.394416 B =16811.842246 C =17642.565178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.100 4.100 5 C -0.079 4.079 6 C -0.154 4.154 7 C -0.084 4.084 8 C -0.206 4.206 9 C 0.130 3.870 10 O -0.292 6.292 11 C 0.070 3.930 12 C 0.464 3.536 13 O -0.487 6.487 14 O -0.325 6.325 15 C 0.051 3.949 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.705 5.705 19 C 0.251 3.749 20 C -0.546 4.546 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.394 0.606 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 21.691 16.496 31.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.101 4.101 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.102 4.102 8 C -0.225 4.225 9 C 0.085 3.915 10 O -0.205 6.205 11 C -0.006 4.006 12 C 0.305 3.695 13 O -0.373 6.373 14 O -0.240 6.240 15 C -0.026 4.026 16 C 0.283 3.717 17 O -0.412 6.412 18 N -0.355 5.355 19 C 0.131 3.869 20 C -0.584 4.584 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.226 0.774 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.074 21.336 16.728 31.021 hybrid contribution 0.199 -0.281 -1.286 1.331 sum -14.875 21.056 15.442 30.051 Atomic orbital electron populations 1.21838 0.94349 1.01972 1.01702 1.20034 0.95782 0.95856 0.95860 1.21838 1.01277 0.95045 1.01702 1.19241 0.99935 0.95043 0.95832 1.20839 0.98668 0.99296 0.90933 1.21072 1.00419 0.97102 0.98621 1.20948 0.96697 0.95845 0.96696 1.21313 1.05727 1.02915 0.92529 1.18782 0.95676 0.93920 0.83108 1.86049 1.65733 1.42428 1.26324 1.21855 0.97573 0.89272 0.91926 1.22872 0.76278 0.78801 0.91555 1.90718 1.47164 1.50549 1.48873 1.86497 1.64017 1.44341 1.29150 1.22939 1.01856 0.98795 0.79057 1.19844 0.81916 0.84992 0.84984 1.90715 1.54322 1.58970 1.37166 1.46369 1.51946 1.31461 1.05753 1.19196 0.89533 0.80926 0.97294 1.21244 1.33206 1.12847 0.91099 0.91674 1.24959 0.95088 0.95602 0.98353 1.69981 1.32617 1.16528 1.33033 0.86328 0.78068 0.78344 0.83979 1.19598 1.20749 1.20753 0.92712 0.92312 0.92587 0.89184 0.92587 0.92311 0.92711 0.85406 0.85886 0.85634 0.85061 0.87291 0.87287 0.88206 0.88215 0.77354 0.95196 0.95196 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 2 C -0.06 -0.49 3.06 -91.77 -0.28 -0.77 16 3 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 4 C -0.10 -0.91 4.79 -104.47 -0.50 -1.41 16 5 C -0.08 -0.59 8.71 -39.61 -0.35 -0.94 16 6 C -0.15 -1.07 10.04 -39.56 -0.40 -1.47 16 7 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16 8 C -0.21 -1.71 9.04 -39.43 -0.36 -2.06 16 9 C 0.13 1.29 6.66 -39.22 -0.26 1.03 16 10 O -0.29 -3.27 8.44 -39.37 -0.33 -3.60 16 11 C 0.07 0.67 5.33 36.00 0.19 0.86 16 12 C 0.46 6.04 8.03 36.00 0.29 6.33 16 13 O -0.49 -7.50 16.25 -25.48 -0.41 -7.91 16 14 O -0.32 -4.80 9.76 -45.93 -0.45 -5.25 16 15 C 0.05 0.74 5.94 36.01 0.21 0.95 16 16 C 0.50 9.70 7.91 -10.98 -0.09 9.62 16 17 O -0.53 -12.69 16.50 -14.11 -0.23 -12.92 16 18 N -0.71 -14.22 5.55 -61.48 -0.34 -14.57 16 19 C 0.25 6.45 5.43 -5.20 -0.03 6.42 16 20 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 21 H 0.07 1.61 7.60 -52.49 -0.40 1.21 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 24 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H 0.05 0.33 7.39 -51.93 -0.38 -0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.97 6.99 -51.93 -0.36 0.61 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.33 7.39 -51.93 -0.38 -0.05 16 35 H 0.13 0.72 7.10 -52.49 -0.37 0.34 16 36 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 39 H 0.11 0.81 7.66 -51.93 -0.40 0.41 16 40 H 0.11 0.81 7.66 -51.93 -0.40 0.41 16 41 H 0.10 1.26 8.13 -51.93 -0.42 0.83 16 42 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 43 H 0.39 6.64 8.32 -40.82 -0.34 6.30 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -34.05 394.33 -8.55 -42.60 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.73 Total: 2.05 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.71 Total: 3.02 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.40 Total: -39.41 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.43 Total: -29.68 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.05 -8.55 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007431904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.482 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds