Wall clock time and date at job start Tue Mar 31 2020 18:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47432 * 2 1 4 4 C 1.50707 * 109.47177 * 120.00003 * 2 1 3 5 5 C 1.38163 * 120.02715 * 299.98059 * 4 2 1 6 6 C 1.38243 * 120.05438 * 180.02562 * 5 4 2 7 7 C 1.38289 * 120.11362 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05159 * 0.02562 * 7 6 5 9 9 C 1.38708 * 120.02785 * 119.99964 * 4 2 1 10 10 O 1.35899 * 120.05461 * 359.95420 * 9 4 2 11 11 C 1.42903 * 116.99930 * 180.02562 * 10 9 4 12 12 C 1.50697 * 109.47103 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00131 * 0.02562 * 12 11 10 14 14 O 1.34238 * 120.00057 * 180.02562 * 12 11 10 15 15 C 1.45199 * 116.99773 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46761 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00027 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00408 * 179.97438 * 16 15 14 19 19 C 1.46493 * 120.00404 * 180.02562 * 18 16 15 20 20 C 1.50696 * 109.47087 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00069 * 359.97438 * 20 19 18 22 22 C 1.37880 * 120.00165 * 179.97438 * 20 19 18 23 23 N 1.31521 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47025 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47306 * 119.99566 * 24 22 20 27 27 H 1.48502 * 109.47260 * 240.00277 * 24 22 20 28 28 H 1.09004 * 109.47289 * 300.00150 * 1 2 3 29 29 H 1.09003 * 109.47159 * 59.99529 * 1 2 3 30 30 H 1.08998 * 109.47534 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47289 * 239.99850 * 2 1 3 32 32 H 1.08992 * 109.47221 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46746 * 300.00412 * 3 2 1 34 34 H 1.09002 * 109.46743 * 60.00150 * 3 2 1 35 35 H 1.08001 * 119.97024 * 0.03662 * 5 4 2 36 36 H 1.08004 * 119.94070 * 180.02562 * 6 5 4 37 37 H 1.07993 * 119.96940 * 180.28495 * 7 6 5 38 38 H 1.08000 * 120.02364 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47294 * 300.00489 * 11 10 9 40 40 H 1.08995 * 109.47056 * 60.00501 * 11 10 9 41 41 H 1.09001 * 109.47121 * 299.99714 * 15 14 12 42 42 H 1.09002 * 109.47461 * 60.00165 * 15 14 12 43 43 H 0.97003 * 119.99050 * 0.02562 * 18 16 15 44 44 H 1.09001 * 109.47099 * 299.99910 * 19 18 16 45 45 H 1.09002 * 109.46972 * 60.00049 * 19 18 16 46 46 H 0.96993 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6992 -0.2387 2.4856 6 6 2.1602 -0.8896 3.6148 7 6 2.9551 -2.0144 3.4913 8 6 3.2909 -2.4900 2.2387 9 6 2.8298 -1.8383 1.1039 10 8 3.1584 -2.3045 -0.1296 11 6 3.9824 -3.4708 -0.1840 12 6 4.2407 -3.8367 -1.6229 13 8 3.7680 -3.1672 -2.5107 14 8 4.9959 -4.9065 -1.9182 15 6 5.2029 -5.1989 -3.3253 16 6 6.0689 -6.4247 -3.4614 17 8 6.4715 -6.9959 -2.4701 18 7 6.3953 -6.8869 -4.6846 19 6 7.2366 -8.0788 -4.8169 20 6 7.4517 -8.3823 -6.2773 21 1 7.0059 -7.7508 -7.0314 22 6 8.2177 -9.4663 -6.6506 23 7 8.7610 -10.2351 -5.7323 24 14 8.4837 -9.8430 -8.4608 25 1 7.7706 -8.8351 -9.2861 26 1 9.9358 -9.7969 -8.7678 27 1 7.9554 -11.1965 -8.7677 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.0781 0.6393 2.5847 36 1 1.8983 -0.5194 4.5950 37 1 3.3101 -2.5238 4.3749 38 1 3.9113 -3.3688 2.1428 39 1 4.9303 -3.2696 0.3152 40 1 3.4766 -4.2967 0.3161 41 1 4.2405 -5.3785 -3.8045 42 1 5.6948 -4.3521 -3.8039 43 1 6.0729 -6.4303 -5.4774 44 1 8.1991 -7.8991 -4.3380 45 1 6.7449 -8.9256 -4.3380 46 1 9.3002 -10.9974 -5.9949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007431904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:50 Heat of formation + Delta-G solvation = -164.190258 kcal Electronic energy + Delta-G solvation = -27356.744895 eV Core-core repulsion = 23210.878586 eV Total energy + Delta-G solvation = -4145.866309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.01968 -41.25810 -40.38204 -38.72134 -37.55279 -36.25459 -36.20224 -34.43218 -31.75581 -31.05876 -30.70453 -29.47125 -28.17953 -27.97973 -24.81373 -24.45463 -23.36635 -22.22552 -21.67873 -20.99112 -19.46587 -19.33029 -18.53147 -18.25937 -18.08193 -17.35519 -17.03193 -16.98100 -16.65999 -16.43739 -16.03345 -15.88059 -15.38924 -14.91759 -14.79988 -14.66032 -14.63527 -14.25992 -14.18491 -13.98381 -13.71040 -13.53338 -13.33239 -12.96802 -12.92478 -12.90469 -12.76542 -12.56515 -12.23434 -12.19195 -12.02715 -12.00817 -11.83048 -11.52542 -11.47908 -11.41433 -10.95121 -10.83998 -9.94960 -9.76687 -9.14030 -8.30711 -6.47098 0.39055 0.47492 0.75362 0.88593 1.44224 1.44466 1.52229 1.58126 2.12806 2.38327 2.64081 2.81574 3.04785 3.40340 3.66461 3.69188 3.88216 3.89483 3.91776 4.01724 4.02709 4.13671 4.25643 4.33023 4.33228 4.51107 4.57363 4.73349 4.80809 4.91139 4.98622 5.01957 5.10381 5.12075 5.21020 5.21044 5.28159 5.38839 5.40353 5.45621 5.59771 5.61363 5.63793 5.81148 5.81676 6.28856 6.44532 6.61981 6.75338 7.18973 7.33499 8.81533 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.001665 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.394416 B =16811.842246 C =17642.565178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.116 4.116 5 C -0.083 4.083 6 C -0.154 4.154 7 C -0.090 4.090 8 C -0.213 4.213 9 C 0.105 3.895 10 O -0.314 6.314 11 C 0.072 3.928 12 C 0.469 3.531 13 O -0.514 6.514 14 O -0.339 6.339 15 C 0.061 3.939 16 C 0.501 3.499 17 O -0.582 6.582 18 N -0.698 5.698 19 C 0.266 3.734 20 C -0.557 4.557 21 H 0.086 0.914 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.985 3.015 25 H -0.254 1.254 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.413 0.587 44 H -0.006 1.006 45 H -0.006 1.006 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 23.352 16.534 33.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.172 4.172 7 C -0.108 4.108 8 C -0.231 4.231 9 C 0.060 3.940 10 O -0.228 6.228 11 C -0.004 4.004 12 C 0.312 3.688 13 O -0.401 6.401 14 O -0.255 6.255 15 C -0.015 4.015 16 C 0.286 3.714 17 O -0.463 6.463 18 N -0.350 5.350 19 C 0.143 3.857 20 C -0.595 4.595 21 H 0.104 0.896 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.808 3.192 25 H -0.177 1.177 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.249 0.751 44 H 0.012 0.988 45 H 0.012 0.988 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.281 23.045 16.756 32.816 hybrid contribution 0.537 -0.758 -1.177 1.499 sum -15.744 22.287 15.579 31.421 Atomic orbital electron populations 1.21808 0.93384 1.01538 1.02725 1.19992 0.96583 0.96256 0.94764 1.21808 1.00514 0.94407 1.02725 1.19451 1.00337 0.95243 0.96585 1.21088 0.98702 0.99867 0.90398 1.21426 0.99535 0.96668 0.99542 1.21288 0.96462 0.96044 0.97027 1.21544 1.05800 1.03309 0.92495 1.19043 0.96994 0.94881 0.83051 1.86006 1.66312 1.42998 1.27506 1.22019 0.98917 0.89852 0.89602 1.23471 0.75025 0.77609 0.92737 1.90704 1.48230 1.51244 1.49949 1.86490 1.64648 1.45302 1.29050 1.22797 1.02098 0.96754 0.79862 1.20620 0.81289 0.85756 0.83700 1.90691 1.56153 1.60787 1.38646 1.46042 1.51407 1.30228 1.07280 1.18645 0.88298 0.81846 0.96867 1.21648 1.33123 1.13211 0.91503 0.89602 1.26042 0.94598 0.95342 1.03529 1.70133 1.33583 1.17287 1.35783 0.85107 0.78007 0.78371 0.77704 1.17700 1.20510 1.20521 0.91105 0.91833 0.93723 0.92082 0.93723 0.91832 0.91105 0.83550 0.83508 0.83532 0.83729 0.85051 0.85045 0.85594 0.85604 0.75093 0.98834 0.98831 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.01 71.98 0.65 -1.27 16 2 C -0.06 -0.99 3.06 -11.54 -0.04 -1.03 16 3 C -0.14 -1.92 9.01 71.98 0.65 -1.27 16 4 C -0.12 -2.04 4.79 -19.77 -0.09 -2.13 16 5 C -0.08 -1.09 8.71 22.25 0.19 -0.89 16 6 C -0.15 -1.76 10.04 22.28 0.22 -1.54 16 7 C -0.09 -1.12 10.04 22.25 0.22 -0.89 16 8 C -0.21 -3.23 9.04 22.36 0.20 -3.03 16 9 C 0.10 2.03 6.66 22.50 0.15 2.18 16 10 O -0.31 -7.03 8.44 -73.33 -0.62 -7.65 16 11 C 0.07 1.31 5.33 71.24 0.38 1.69 16 12 C 0.47 11.84 8.03 71.24 0.57 12.42 16 13 O -0.51 -15.55 16.25 28.39 0.46 -15.09 16 14 O -0.34 -9.74 9.76 -45.14 -0.44 -10.18 16 15 C 0.06 1.71 5.94 71.24 0.42 2.13 16 16 C 0.50 19.52 7.91 87.66 0.69 20.21 16 17 O -0.58 -28.50 16.50 15.75 0.26 -28.24 16 18 N -0.70 -28.26 5.55 -466.80 -2.59 -30.85 16 19 C 0.27 14.16 5.43 85.63 0.46 14.63 16 20 C -0.56 -29.54 9.28 25.60 0.24 -29.30 16 21 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 22 C 0.00 0.26 5.46 84.65 0.46 0.72 16 23 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 24 Si 0.98 41.64 29.54 68.60 2.03 43.67 16 25 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.07 0.74 7.39 -2.38 -0.02 0.72 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 1.39 6.99 -2.38 -0.02 1.37 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.74 7.39 -2.39 -0.02 0.72 16 35 H 0.15 1.27 7.10 -2.91 -0.02 1.24 16 36 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 39 H 0.13 1.78 7.66 -2.39 -0.02 1.76 16 40 H 0.13 1.78 7.66 -2.39 -0.02 1.76 16 41 H 0.13 2.90 8.13 -2.39 -0.02 2.88 16 42 H 0.13 2.90 8.13 -2.39 -0.02 2.88 16 43 H 0.41 13.42 8.32 -92.71 -0.77 12.65 16 44 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 46 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -76.65 394.33 5.00 -71.65 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.23 Total: 18.86 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.39 Total: 12.61 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.30 Total: -85.63 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -0.34 Total: -61.16 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -76.65 5.00 -71.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007431904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.541 kcal (2) G-P(sol) polarization free energy of solvation -76.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds