Wall clock time and date at job start Tue Mar 31 2020 18:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.46848 * 180.02562 * 9 8 7 11 11 O 1.20827 * 120.00549 * 0.02562 * 10 9 8 12 12 O 1.34238 * 119.99564 * 180.02562 * 10 9 8 13 13 C 1.45202 * 116.99797 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47302 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99791 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99885 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47033 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99821 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00082 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99756 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00189 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46794 * 60.00067 * 22 20 18 24 24 H 1.48496 * 109.47191 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47000 * 300.00305 * 22 20 18 26 26 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 27 27 C 1.38139 * 119.94262 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 36 36 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 37 37 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 38 38 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 39 39 H 1.09001 * 109.47032 * 299.99759 * 13 12 10 40 40 H 1.09005 * 109.47202 * 59.99787 * 13 12 10 41 41 H 0.96997 * 120.00081 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47556 * 300.00461 * 17 16 14 43 43 H 1.09005 * 109.46810 * 60.00571 * 17 16 14 44 44 H 0.97003 * 119.99904 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.02456 * 179.97438 * 26 7 6 46 46 H 1.07998 * 119.97261 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6122 -2.9495 -6.9696 11 8 4.2911 -3.9125 -6.7021 12 8 3.3832 -2.6250 -8.2519 13 6 3.9822 -3.4761 -9.2643 14 6 3.6183 -2.9612 -10.6330 15 8 2.9229 -1.9738 -10.7443 16 7 4.0664 -3.5973 -11.7335 17 6 3.7121 -3.0970 -13.0640 18 6 4.3340 -3.9803 -14.1148 19 1 4.9335 -4.8291 -13.8209 20 6 4.1384 -3.7041 -15.4514 21 7 3.4087 -2.6701 -15.8093 22 14 4.9098 -4.7985 -16.7540 23 1 4.4050 -6.1862 -16.5967 24 1 4.5516 -4.2907 -18.1027 25 1 6.3865 -4.7883 -16.5978 26 6 3.2885 -2.4877 -2.2287 27 6 2.8276 -1.8341 -1.1023 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.0679 0.6351 -2.5831 36 1 1.8946 -0.5164 -4.5955 37 1 1.9356 -2.1162 -5.9460 38 1 3.3897 -1.0896 -5.9464 39 1 5.0662 -3.4694 -9.1496 40 1 3.6110 -4.4945 -9.1490 41 1 4.6229 -4.3868 -11.6445 42 1 2.6281 -3.1047 -13.1784 43 1 4.0824 -2.0783 -13.1796 44 1 3.2714 -2.4756 -16.7496 45 1 3.9087 -3.3660 -2.1281 46 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007499593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:55 Heat of formation + Delta-G solvation = -145.113538 kcal Electronic energy + Delta-G solvation = -26725.106950 eV Core-core repulsion = 22580.067870 eV Total energy + Delta-G solvation = -4145.039080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02484 -40.34273 -38.88366 -38.37238 -36.45487 -35.17292 -34.30020 -32.45173 -31.49562 -30.53228 -29.33117 -28.23851 -27.56459 -26.55384 -23.75233 -23.22598 -22.56343 -21.17404 -20.44230 -20.00700 -18.88221 -17.89564 -17.42798 -17.25496 -16.82542 -16.06755 -15.98466 -15.76746 -15.44165 -15.11078 -14.81034 -14.60463 -14.57924 -14.22562 -13.93825 -13.71338 -13.60202 -13.20079 -13.10578 -12.86043 -12.78396 -12.51926 -12.47453 -12.02142 -11.83523 -11.72655 -11.63201 -11.22646 -11.21899 -11.06248 -11.02980 -10.94051 -10.81284 -10.66852 -10.37147 -9.48742 -9.37432 -9.25303 -8.80955 -8.46379 -8.03777 -6.22045 -4.29790 0.96724 1.03072 1.73340 1.90381 3.10660 3.12524 3.22783 3.27931 3.29348 3.36281 3.85470 4.25058 4.28558 4.32771 4.41743 4.52202 4.60235 4.63987 4.66339 4.76889 4.95863 4.98498 5.04449 5.09700 5.13515 5.16043 5.19639 5.24594 5.27443 5.40382 5.42689 5.53530 5.65165 5.77685 5.80394 5.90782 5.99884 6.13343 6.27655 6.35369 6.93577 7.17977 7.24947 7.41882 7.47676 7.58363 7.88838 8.44672 8.66746 8.90886 9.36692 10.87981 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.001436 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.072286 B =19491.969382 C =20048.376728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.114 4.114 5 C -0.073 4.073 6 C -0.206 4.206 7 C 0.126 3.874 8 O -0.295 6.295 9 C 0.071 3.929 10 C 0.464 3.536 11 O -0.487 6.487 12 O -0.325 6.325 13 C 0.051 3.949 14 C 0.500 3.500 15 O -0.534 6.534 16 N -0.705 5.705 17 C 0.251 3.749 18 C -0.547 4.547 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.143 4.143 27 C -0.078 4.078 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.393 0.607 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.267 0.733 45 H 0.133 0.867 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 4.168 32.338 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.203 4.203 4 C -0.115 4.115 5 C -0.091 4.091 6 C -0.224 4.224 7 C 0.081 3.919 8 O -0.209 6.209 9 C -0.005 4.005 10 C 0.305 3.695 11 O -0.373 6.373 12 O -0.240 6.240 13 C -0.027 4.027 14 C 0.283 3.717 15 O -0.412 6.412 16 N -0.355 5.355 17 C 0.131 3.869 18 C -0.585 4.585 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.162 4.162 27 C -0.096 4.096 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.226 0.774 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.151 0.849 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.187 4.523 32.072 32.545 hybrid contribution 0.662 -0.940 -0.959 1.497 sum -2.525 3.584 31.113 31.420 Atomic orbital electron populations 1.21875 0.94385 1.02065 1.01941 1.20065 0.95885 0.95964 0.95199 1.21873 1.01294 0.95154 1.01939 1.19804 0.99995 0.96904 0.94752 1.20770 0.98144 0.98961 0.91244 1.21314 1.03079 0.97781 1.00261 1.18986 0.94576 0.91970 0.86328 1.86071 1.70746 1.52385 1.11650 1.21850 1.01439 0.96983 0.80277 1.22881 0.78876 0.84057 0.83711 1.90720 1.35488 1.27083 1.84058 1.86497 1.68959 1.54121 1.14416 1.22942 0.99690 0.94366 0.85662 1.19841 0.81862 0.84911 0.85114 1.90714 1.37824 1.25778 1.86861 1.46366 1.51504 1.30525 1.07122 1.19189 0.96785 0.95501 0.75413 1.21169 1.33477 1.13010 0.90883 0.91791 1.24946 0.94968 0.95400 0.98591 1.69961 1.37750 1.26902 1.17553 0.86442 0.79594 0.80461 0.80236 1.20017 1.21022 1.20024 1.20433 1.04094 1.02471 0.89202 1.20870 0.96370 0.94501 0.97897 0.92423 0.92433 0.92493 0.90530 0.92443 0.92419 0.92492 0.85678 0.85046 0.87261 0.87253 0.88204 0.88212 0.77358 0.95205 0.95200 0.92292 0.84939 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.00 37.16 0.33 -0.38 16 2 C -0.05 -0.28 3.09 -91.77 -0.28 -0.56 16 3 C -0.15 -0.71 9.01 37.16 0.33 -0.38 16 4 C -0.11 -0.80 4.78 -104.60 -0.50 -1.31 16 5 C -0.07 -0.53 8.70 -39.60 -0.34 -0.88 16 6 C -0.21 -1.68 9.04 -39.44 -0.36 -2.04 16 7 C 0.13 1.24 6.69 -39.22 -0.26 0.98 16 8 O -0.30 -3.37 9.67 -39.39 -0.38 -3.75 16 9 C 0.07 0.68 5.33 36.00 0.19 0.87 16 10 C 0.46 6.11 8.03 36.00 0.29 6.40 16 11 O -0.49 -7.65 16.25 -25.48 -0.41 -8.07 16 12 O -0.32 -4.82 9.76 -45.92 -0.45 -5.27 16 13 C 0.05 0.74 5.94 36.01 0.21 0.95 16 14 C 0.50 9.72 7.91 -10.99 -0.09 9.63 16 15 O -0.53 -12.70 16.50 -14.11 -0.23 -12.93 16 16 N -0.70 -14.24 5.55 -61.47 -0.34 -14.58 16 17 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 18 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.58 13.29 55.43 0.74 -24.85 16 22 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 C -0.14 -1.27 9.99 -39.43 -0.39 -1.67 16 27 C -0.08 -0.57 9.66 -39.61 -0.38 -0.96 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.28 7.37 -51.93 -0.38 -0.10 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.36 7.87 -51.93 -0.41 -0.05 16 32 H 0.06 0.28 7.40 -51.93 -0.38 -0.10 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.13 0.71 7.09 -52.49 -0.37 0.34 16 36 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 37 H 0.11 0.81 7.66 -51.93 -0.40 0.41 16 38 H 0.11 0.81 7.66 -51.93 -0.40 0.41 16 39 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 40 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 41 H 0.39 6.65 8.32 -40.82 -0.34 6.31 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.13 0.67 7.94 -52.49 -0.42 0.25 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -34.17 395.92 -8.60 -42.76 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.77 Total: 1.26 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.69 Total: 3.98 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.40 Total: -39.43 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.48 Total: -30.01 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.17 -8.60 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007499593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.350 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds