Wall clock time and date at job start Tue Mar 31 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.50694 * 109.46848 * 180.02562 * 9 8 7 11 11 O 1.20827 * 120.00549 * 0.02562 * 10 9 8 12 12 O 1.34238 * 119.99564 * 180.02562 * 10 9 8 13 13 C 1.45202 * 116.99797 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47302 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99791 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99885 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47033 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99821 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00082 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99756 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00189 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46794 * 60.00067 * 22 20 18 24 24 H 1.48496 * 109.47191 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47000 * 300.00305 * 22 20 18 26 26 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 27 27 C 1.38139 * 119.94262 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 36 36 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 37 37 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 38 38 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 39 39 H 1.09001 * 109.47032 * 299.99759 * 13 12 10 40 40 H 1.09005 * 109.47202 * 59.99787 * 13 12 10 41 41 H 0.96997 * 120.00081 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47556 * 300.00461 * 17 16 14 43 43 H 1.09005 * 109.46810 * 60.00571 * 17 16 14 44 44 H 0.97003 * 119.99904 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.02456 * 179.97438 * 26 7 6 46 46 H 1.07998 * 119.97261 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6122 -2.9495 -6.9696 11 8 4.2911 -3.9125 -6.7021 12 8 3.3832 -2.6250 -8.2519 13 6 3.9822 -3.4761 -9.2643 14 6 3.6183 -2.9612 -10.6330 15 8 2.9229 -1.9738 -10.7443 16 7 4.0664 -3.5973 -11.7335 17 6 3.7121 -3.0970 -13.0640 18 6 4.3340 -3.9803 -14.1148 19 1 4.9335 -4.8291 -13.8209 20 6 4.1384 -3.7041 -15.4514 21 7 3.4087 -2.6701 -15.8093 22 14 4.9098 -4.7985 -16.7540 23 1 4.4050 -6.1862 -16.5967 24 1 4.5516 -4.2907 -18.1027 25 1 6.3865 -4.7883 -16.5978 26 6 3.2885 -2.4877 -2.2287 27 6 2.8276 -1.8341 -1.1023 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.0679 0.6351 -2.5831 36 1 1.8946 -0.5164 -4.5955 37 1 1.9356 -2.1162 -5.9460 38 1 3.3897 -1.0896 -5.9464 39 1 5.0662 -3.4694 -9.1496 40 1 3.6110 -4.4945 -9.1490 41 1 4.6229 -4.3868 -11.6445 42 1 2.6281 -3.1047 -13.1784 43 1 4.0824 -2.0783 -13.1796 44 1 3.2714 -2.4756 -16.7496 45 1 3.9087 -3.3660 -2.1281 46 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007499593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:54 Heat of formation + Delta-G solvation = -165.244471 kcal Electronic energy + Delta-G solvation = -26725.979893 eV Core-core repulsion = 22580.067870 eV Total energy + Delta-G solvation = -4145.912023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99892 -41.16405 -40.37797 -39.12305 -37.60984 -36.19545 -35.67898 -34.42535 -32.10280 -31.48476 -30.44767 -29.27613 -28.14696 -27.92827 -24.73422 -24.29971 -23.70454 -22.13639 -21.67223 -20.93420 -19.64173 -19.33371 -18.54804 -18.25741 -18.08589 -17.33031 -17.01773 -16.97249 -16.63344 -16.31349 -16.02094 -15.87440 -15.34828 -15.08104 -14.69766 -14.61750 -14.31641 -14.27793 -14.22735 -14.01516 -13.73133 -13.69444 -13.40201 -13.34529 -12.97199 -12.96302 -12.68703 -12.24456 -12.22857 -12.16774 -12.00708 -11.77885 -11.76310 -11.66600 -11.52692 -11.42371 -10.94447 -10.80850 -9.95521 -9.94207 -9.08279 -8.29635 -6.46265 0.38846 0.42378 0.75587 0.88686 1.44630 1.47779 1.52946 1.56175 2.13089 2.39096 2.64579 2.77741 3.05715 3.40441 3.67557 3.79046 3.82191 3.89493 3.92644 4.00358 4.03385 4.04193 4.17473 4.37903 4.43642 4.48609 4.59478 4.71561 4.85457 4.99055 5.02390 5.04716 5.09733 5.10835 5.15644 5.21767 5.31830 5.37812 5.40655 5.43634 5.45729 5.61886 5.74458 5.78791 5.81777 6.27489 6.44572 6.62195 6.75985 7.19671 7.34231 8.82103 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.001436 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.072286 B =19491.969382 C =20048.376728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.115 4.115 5 C -0.079 4.079 6 C -0.209 4.209 7 C 0.104 3.896 8 O -0.318 6.318 9 C 0.072 3.928 10 C 0.469 3.531 11 O -0.515 6.515 12 O -0.339 6.339 13 C 0.061 3.939 14 C 0.501 3.499 15 O -0.582 6.582 16 N -0.698 5.698 17 C 0.266 3.734 18 C -0.559 4.559 19 H 0.086 0.914 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.263 1.263 26 C -0.159 4.159 27 C -0.082 4.082 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.413 0.587 42 H -0.006 1.006 43 H -0.006 1.006 44 H 0.269 0.731 45 H 0.131 0.869 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 3.415 33.708 33.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.115 4.115 5 C -0.097 4.097 6 C -0.228 4.228 7 C 0.060 3.940 8 O -0.233 6.233 9 C -0.003 4.003 10 C 0.312 3.688 11 O -0.403 6.403 12 O -0.254 6.254 13 C -0.015 4.015 14 C 0.286 3.714 15 O -0.463 6.463 16 N -0.349 5.349 17 C 0.144 3.856 18 C -0.597 4.597 19 H 0.104 0.896 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.187 1.187 26 C -0.177 4.177 27 C -0.100 4.100 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.249 0.751 42 H 0.012 0.988 43 H 0.012 0.988 44 H 0.078 0.922 45 H 0.149 0.851 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.637 3.740 33.488 33.800 hybrid contribution 0.454 -0.643 -1.266 1.490 sum -2.183 3.097 32.223 32.445 Atomic orbital electron populations 1.21867 0.93978 1.01868 1.02455 1.20101 0.96154 0.96093 0.94635 1.21865 1.00937 0.94908 1.02450 1.20089 0.99317 0.96652 0.95474 1.21031 0.98144 0.99377 0.91150 1.21520 1.02620 0.97271 1.01379 1.19190 0.95845 0.92940 0.86029 1.86015 1.71543 1.53379 1.12357 1.22031 1.02562 0.96982 0.78737 1.23493 0.78087 0.83846 0.83415 1.90706 1.36950 1.28494 1.84166 1.86491 1.69260 1.54442 1.15241 1.22801 1.01211 0.94882 0.82631 1.20619 0.80297 0.83788 0.86670 1.90690 1.39826 1.27943 1.87810 1.46039 1.51948 1.31267 1.05688 1.18640 0.94412 0.94129 0.78436 1.21587 1.33433 1.13462 0.91211 0.89636 1.26023 0.95272 0.96767 1.01290 1.70121 1.39430 1.29045 1.18150 0.85218 0.78979 0.78504 0.76593 1.18726 1.21145 1.18739 1.20621 1.04603 1.02889 0.89625 1.21125 0.96071 0.94463 0.98302 0.91420 0.92454 0.93035 0.89773 0.92472 0.91415 0.93037 0.84097 0.83541 0.84890 0.84883 0.85589 0.85598 0.75097 0.98839 0.98836 0.92205 0.85079 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.00 71.98 0.65 -0.50 16 2 C -0.05 -0.45 3.09 -11.54 -0.04 -0.49 16 3 C -0.14 -1.15 9.01 71.98 0.65 -0.51 16 4 C -0.12 -1.45 4.78 -19.85 -0.09 -1.55 16 5 C -0.08 -1.03 8.70 22.26 0.19 -0.84 16 6 C -0.21 -3.15 9.04 22.36 0.20 -2.95 16 7 C 0.10 1.98 6.69 22.51 0.15 2.13 16 8 O -0.32 -7.07 9.67 -73.40 -0.71 -7.78 16 9 C 0.07 1.29 5.33 71.23 0.38 1.67 16 10 C 0.47 11.77 8.03 71.23 0.57 12.34 16 11 O -0.52 -15.64 16.25 28.39 0.46 -15.18 16 12 O -0.34 -9.65 9.76 -45.14 -0.44 -10.09 16 13 C 0.06 1.69 5.94 71.24 0.42 2.12 16 14 C 0.50 19.45 7.91 87.66 0.69 20.14 16 15 O -0.58 -28.41 16.50 15.76 0.26 -28.15 16 16 N -0.70 -28.17 5.55 -466.78 -2.59 -30.76 16 17 C 0.27 14.16 5.43 85.63 0.46 14.63 16 18 C -0.56 -29.60 9.28 25.60 0.24 -29.36 16 19 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 22 Si 0.98 41.52 29.54 68.60 2.03 43.54 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 26 C -0.16 -2.77 9.99 22.37 0.22 -2.54 16 27 C -0.08 -1.11 9.66 22.25 0.22 -0.89 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.46 7.37 -2.39 -0.02 0.44 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.62 7.87 -2.39 -0.02 0.60 16 32 H 0.06 0.46 7.40 -2.39 -0.02 0.44 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.14 1.33 7.09 -2.91 -0.02 1.31 16 36 H 0.15 1.62 6.30 -2.91 -0.02 1.60 16 37 H 0.13 1.73 7.66 -2.39 -0.02 1.71 16 38 H 0.13 1.73 7.66 -2.38 -0.02 1.71 16 39 H 0.13 2.88 8.13 -2.39 -0.02 2.87 16 40 H 0.13 2.88 8.13 -2.38 -0.02 2.86 16 41 H 0.41 13.37 8.32 -92.71 -0.77 12.60 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 44 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.15 1.31 7.94 -2.91 -0.02 1.29 16 Total: -1.00 -76.10 395.92 4.90 -71.20 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.23 Total: 17.72 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.38 Total: 14.20 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.30 Total: -85.46 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -0.43 Total: -61.20 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -76.10 4.90 -71.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007499593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.043 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds