Wall clock time and date at job start Tue Mar 31 2020 19:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 C 1.53002 * 109.47435 * 240.00404 * 2 1 3 5 5 O 1.45202 * 109.47208 * 119.99977 * 2 1 3 6 6 C 1.34631 * 117.00031 * 60.00416 * 5 2 1 7 7 O 1.21514 * 120.00153 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00224 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00216 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.46847 * 324.99609 * 9 8 6 11 11 C 1.52997 * 109.47349 * 84.99451 * 9 8 6 12 12 C 1.50701 * 109.47212 * 295.00023 * 11 9 8 13 13 C 1.38233 * 120.00099 * 269.72808 * 12 11 9 14 14 C 1.38239 * 119.99655 * 179.76882 * 13 12 11 15 15 C 1.38230 * 120.00228 * 0.50243 * 14 13 12 16 16 C 1.38238 * 119.99995 * 359.75228 * 15 14 13 17 17 C 1.38238 * 120.00072 * 359.97438 * 16 15 14 18 18 C 1.50698 * 109.46820 * 205.00139 * 9 8 6 19 19 O 1.21209 * 120.00569 * 359.97438 * 18 9 8 20 20 O 1.34315 * 119.99442 * 180.02562 * 18 9 8 21 21 C 1.34931 * 116.99654 * 179.97438 * 20 18 9 22 22 H 1.07999 * 119.99696 * 0.02562 * 21 20 18 23 23 C 1.38746 * 119.99822 * 179.97438 * 21 20 18 24 24 N 1.31448 * 120.00125 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99837 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47208 * 60.00235 * 25 23 21 27 27 H 1.48507 * 109.47001 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47443 * 299.99950 * 25 23 21 29 29 H 1.08993 * 109.47299 * 300.00046 * 1 2 3 30 30 H 1.09004 * 109.47143 * 60.00282 * 1 2 3 31 31 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47470 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47111 * 300.00287 * 3 2 1 34 34 H 1.09003 * 109.47028 * 59.99909 * 3 2 1 35 35 H 1.09004 * 109.46855 * 299.99314 * 4 2 1 36 36 H 1.08992 * 109.47224 * 59.99831 * 4 2 1 37 37 H 1.09003 * 109.47084 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00199 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47153 * 175.00025 * 11 9 8 40 40 H 1.09001 * 109.46832 * 55.00216 * 11 9 8 41 41 H 1.08003 * 119.99927 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.99431 * 180.23215 * 14 13 12 43 43 H 1.07997 * 120.00220 * 179.73036 * 15 14 13 44 44 H 1.08002 * 119.99952 * 179.97438 * 16 15 14 45 45 H 1.07991 * 120.00062 * 179.97438 * 17 16 15 46 46 H 0.97000 * 119.99742 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6742 -4.0669 2.5830 10 1 0.6654 -4.2096 2.1956 11 6 2.6471 -4.9639 1.8150 12 6 2.5258 -4.6880 0.3384 13 6 1.6282 -5.4077 -0.4278 14 6 1.5136 -5.1512 -1.7813 15 6 2.3040 -4.1823 -2.3706 16 6 3.2054 -3.4662 -1.6053 17 6 3.3161 -3.7187 -0.2507 18 6 1.7062 -4.4277 4.0458 19 8 2.0260 -3.5968 4.8683 20 8 1.3811 -5.6705 4.4382 21 6 1.4308 -5.9276 5.7618 22 1 1.7218 -5.1499 6.4524 23 6 1.1070 -7.1908 6.2357 24 7 0.7522 -8.1371 5.3952 25 14 1.1764 -7.5469 8.0681 26 1 0.2393 -6.6442 8.7837 27 1 0.7880 -8.9592 8.3130 28 1 2.5577 -7.3208 8.5644 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7489 -1.2493 36 1 1.6768 -0.2073 -2.1392 37 1 3.1301 -0.7215 -1.2490 38 1 2.6269 -2.2366 3.0834 39 1 2.4085 -6.0094 2.0101 40 1 3.6664 -4.7569 2.1409 41 1 1.0140 -6.1680 0.0317 42 1 0.8096 -5.7109 -2.3792 43 1 2.2176 -3.9850 -3.4288 44 1 3.8233 -2.7095 -2.0658 45 1 4.0206 -3.1596 0.3470 46 1 0.5255 -9.0201 5.7267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027413130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:04 Heat of formation + Delta-G solvation = -132.989832 kcal Electronic energy + Delta-G solvation = -30547.553123 eV Core-core repulsion = 26403.039766 eV Total energy + Delta-G solvation = -4144.513357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81115 -39.41461 -38.77361 -37.27877 -35.56959 -34.58020 -33.96039 -32.31422 -32.03319 -30.66328 -28.91925 -27.44764 -27.32405 -25.64882 -24.39568 -22.41987 -22.22103 -20.86949 -19.97157 -19.89912 -18.29540 -17.83767 -16.65913 -16.41067 -16.27711 -16.01124 -15.48941 -15.13334 -14.69717 -14.62243 -14.57623 -14.35867 -14.27949 -13.84623 -13.43437 -13.09793 -12.93562 -12.89213 -12.56056 -12.33579 -12.20820 -12.11316 -11.87618 -11.71399 -11.65816 -11.45017 -11.37642 -11.24512 -11.16504 -10.80340 -10.67402 -10.52159 -10.51020 -10.26087 -9.94428 -9.78228 -9.27495 -9.09524 -8.66591 -8.54153 -8.20194 -6.50189 -4.18769 1.65861 1.71899 2.27645 3.03146 3.11838 3.15403 3.18832 3.36411 3.82243 4.09567 4.28506 4.43440 4.70873 4.74294 4.89180 5.02541 5.08059 5.12720 5.22596 5.36485 5.39089 5.40624 5.48198 5.49066 5.58286 5.63310 5.70784 5.77588 5.80703 5.87103 5.92352 5.97986 6.14441 6.24353 6.32217 6.36189 6.38171 6.45487 6.63331 6.72499 6.75877 6.78510 6.97432 7.29505 7.31906 7.71498 7.83337 8.53404 8.65943 8.97825 9.68340 10.66701 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.003561 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.376265 B = 7860.306449 C = 9166.332342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.139 3.861 3 C -0.140 4.140 4 C -0.189 4.189 5 O -0.366 6.366 6 C 0.654 3.346 7 O -0.553 6.553 8 N -0.693 5.693 9 C 0.193 3.807 10 H 0.117 0.883 11 C -0.093 4.093 12 C -0.053 4.053 13 C -0.102 4.102 14 C -0.113 4.113 15 C -0.129 4.129 16 C -0.113 4.113 17 C -0.111 4.111 18 C 0.391 3.609 19 O -0.550 6.550 20 O -0.201 6.201 21 C -0.385 4.385 22 H 0.097 0.903 23 C 0.046 3.954 24 N -0.859 5.859 25 Si 0.945 3.055 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.412 0.588 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 11.555 -14.774 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.102 3.898 3 C -0.198 4.198 4 C -0.246 4.246 5 O -0.282 6.282 6 C 0.407 3.593 7 O -0.441 6.441 8 N -0.354 5.354 9 C 0.087 3.913 10 H 0.135 0.865 11 C -0.131 4.131 12 C -0.053 4.053 13 C -0.120 4.120 14 C -0.131 4.131 15 C -0.147 4.147 16 C -0.132 4.132 17 C -0.130 4.130 18 C 0.236 3.764 19 O -0.448 6.448 20 O -0.107 6.107 21 C -0.461 4.461 22 H 0.115 0.885 23 C -0.160 4.160 24 N -0.495 5.495 25 Si 0.769 3.231 26 H -0.194 1.194 27 H -0.203 1.203 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.249 0.751 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.680 11.300 -15.005 18.974 hybrid contribution 0.188 0.170 1.152 1.179 sum 2.868 11.470 -13.853 18.212 Atomic orbital electron populations 1.22511 0.94241 1.05244 1.02040 1.21973 0.94197 0.91220 0.82441 1.21855 1.02100 0.92989 1.02824 1.22773 1.01230 1.04623 0.95957 1.86285 1.71796 1.23861 1.46215 1.17821 0.79052 0.80231 0.82221 1.90931 1.40635 1.69904 1.42663 1.44398 1.55523 1.11562 1.23942 1.19995 1.01209 0.79073 0.91027 0.86545 1.21062 0.99914 1.01240 0.90891 1.19599 0.95698 0.95432 0.94594 1.20983 0.97737 0.99468 0.93799 1.20984 0.99100 0.98055 0.95004 1.20929 0.97362 0.97310 0.99104 1.20892 0.98853 0.99401 0.94010 1.20866 0.99505 0.97760 0.94820 1.22839 0.80272 0.83184 0.90088 1.90567 1.49366 1.50589 1.54281 1.83850 1.71149 1.27142 1.28568 1.21208 1.47991 0.97856 0.79044 0.88529 1.25345 0.95735 0.94309 1.00562 1.69978 1.41401 1.03183 1.34959 0.85723 0.79286 0.77739 0.80327 1.19414 1.20290 1.19394 0.92383 0.91565 0.89103 0.91637 0.90445 0.91629 0.87721 0.91896 0.92490 0.75077 0.87766 0.90317 0.86131 0.86794 0.87097 0.87149 0.87330 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 2 C 0.14 1.62 1.13 -90.62 -0.10 1.52 16 3 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 4 C -0.19 -2.10 7.33 37.16 0.27 -1.82 16 5 O -0.37 -5.28 9.94 -40.30 -0.40 -5.68 16 6 C 0.65 10.40 6.05 54.05 0.33 10.73 16 7 O -0.55 -9.22 8.90 -19.28 -0.17 -9.39 16 8 N -0.69 -11.55 4.84 -59.86 -0.29 -11.84 16 9 C 0.19 3.54 2.76 -69.08 -0.19 3.35 16 10 H 0.12 2.21 7.58 -51.92 -0.39 1.81 16 11 C -0.09 -1.53 4.99 -27.88 -0.14 -1.67 16 12 C -0.05 -0.81 3.37 -104.62 -0.35 -1.16 16 13 C -0.10 -1.51 9.59 -39.58 -0.38 -1.89 16 14 C -0.11 -1.49 10.05 -39.58 -0.40 -1.89 16 15 C -0.13 -1.58 9.93 -39.58 -0.39 -1.97 16 16 C -0.11 -1.42 6.99 -39.58 -0.28 -1.69 16 17 C -0.11 -1.56 6.74 -39.58 -0.27 -1.83 16 18 C 0.39 9.10 7.27 36.00 0.26 9.36 16 19 O -0.55 -13.83 15.07 -19.05 -0.29 -14.11 16 20 O -0.20 -5.44 9.56 -20.74 -0.20 -5.64 16 21 C -0.39 -10.90 9.64 30.92 0.30 -10.61 16 22 H 0.10 2.75 6.86 -52.49 -0.36 2.39 16 23 C 0.05 1.24 5.49 -17.53 -0.10 1.14 16 24 N -0.86 -24.17 13.67 55.48 0.76 -23.41 16 25 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.39 3.63 -51.93 -0.19 1.20 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.60 7.61 -51.93 -0.39 0.21 16 38 H 0.41 6.82 7.90 -40.82 -0.32 6.50 16 39 H 0.10 1.82 7.94 -51.93 -0.41 1.41 16 40 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 41 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.11 1.16 7.58 -52.49 -0.40 0.77 16 45 H 0.11 1.49 8.05 -52.49 -0.42 1.07 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -31.09 373.86 -7.33 -38.42 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.56 Total: 11.63 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.80 Total: -1.21 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.47 Total: -35.25 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.06 Total: -34.82 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.09 -7.33 -38.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027413130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.571 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds