Wall clock time and date at job start Tue Mar 31 2020 19:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 C 1.53002 * 109.47435 * 240.00404 * 2 1 3 5 5 O 1.45202 * 109.47208 * 119.99977 * 2 1 3 6 6 C 1.34631 * 117.00031 * 60.00416 * 5 2 1 7 7 O 1.21514 * 120.00153 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00224 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00216 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.46847 * 324.99609 * 9 8 6 11 11 C 1.52997 * 109.47349 * 84.99451 * 9 8 6 12 12 C 1.50701 * 109.47212 * 295.00023 * 11 9 8 13 13 C 1.38233 * 120.00099 * 269.72808 * 12 11 9 14 14 C 1.38239 * 119.99655 * 179.76882 * 13 12 11 15 15 C 1.38230 * 120.00228 * 0.50243 * 14 13 12 16 16 C 1.38238 * 119.99995 * 359.75228 * 15 14 13 17 17 C 1.38238 * 120.00072 * 359.97438 * 16 15 14 18 18 C 1.50698 * 109.46820 * 205.00139 * 9 8 6 19 19 O 1.21209 * 120.00569 * 359.97438 * 18 9 8 20 20 O 1.34315 * 119.99442 * 180.02562 * 18 9 8 21 21 C 1.34931 * 116.99654 * 179.97438 * 20 18 9 22 22 H 1.07999 * 119.99696 * 0.02562 * 21 20 18 23 23 C 1.38746 * 119.99822 * 179.97438 * 21 20 18 24 24 N 1.31448 * 120.00125 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99837 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47208 * 60.00235 * 25 23 21 27 27 H 1.48507 * 109.47001 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47443 * 299.99950 * 25 23 21 29 29 H 1.08993 * 109.47299 * 300.00046 * 1 2 3 30 30 H 1.09004 * 109.47143 * 60.00282 * 1 2 3 31 31 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47470 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47111 * 300.00287 * 3 2 1 34 34 H 1.09003 * 109.47028 * 59.99909 * 3 2 1 35 35 H 1.09004 * 109.46855 * 299.99314 * 4 2 1 36 36 H 1.08992 * 109.47224 * 59.99831 * 4 2 1 37 37 H 1.09003 * 109.47084 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00199 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47153 * 175.00025 * 11 9 8 40 40 H 1.09001 * 109.46832 * 55.00216 * 11 9 8 41 41 H 1.08003 * 119.99927 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.99431 * 180.23215 * 14 13 12 43 43 H 1.07997 * 120.00220 * 179.73036 * 15 14 13 44 44 H 1.08002 * 119.99952 * 179.97438 * 16 15 14 45 45 H 1.07991 * 120.00062 * 179.97438 * 17 16 15 46 46 H 0.97000 * 119.99742 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6742 -4.0669 2.5830 10 1 0.6654 -4.2096 2.1956 11 6 2.6471 -4.9639 1.8150 12 6 2.5258 -4.6880 0.3384 13 6 1.6282 -5.4077 -0.4278 14 6 1.5136 -5.1512 -1.7813 15 6 2.3040 -4.1823 -2.3706 16 6 3.2054 -3.4662 -1.6053 17 6 3.3161 -3.7187 -0.2507 18 6 1.7062 -4.4277 4.0458 19 8 2.0260 -3.5968 4.8683 20 8 1.3811 -5.6705 4.4382 21 6 1.4308 -5.9276 5.7618 22 1 1.7218 -5.1499 6.4524 23 6 1.1070 -7.1908 6.2357 24 7 0.7522 -8.1371 5.3952 25 14 1.1764 -7.5469 8.0681 26 1 0.2393 -6.6442 8.7837 27 1 0.7880 -8.9592 8.3130 28 1 2.5577 -7.3208 8.5644 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7489 -1.2493 36 1 1.6768 -0.2073 -2.1392 37 1 3.1301 -0.7215 -1.2490 38 1 2.6269 -2.2366 3.0834 39 1 2.4085 -6.0094 2.0101 40 1 3.6664 -4.7569 2.1409 41 1 1.0140 -6.1680 0.0317 42 1 0.8096 -5.7109 -2.3792 43 1 2.2176 -3.9850 -3.4288 44 1 3.8233 -2.7095 -2.0658 45 1 4.0206 -3.1596 0.3470 46 1 0.5255 -9.0201 5.7267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027413130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:03 Heat of formation + Delta-G solvation = -150.954761 kcal Electronic energy + Delta-G solvation = -30548.332141 eV Core-core repulsion = 26403.039766 eV Total energy + Delta-G solvation = -4145.292375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09400 -41.12924 -39.98540 -38.55329 -37.36170 -36.09623 -34.98631 -34.33870 -33.28977 -31.70759 -30.29018 -28.26834 -28.16113 -27.57695 -25.87448 -23.66489 -23.33950 -22.17826 -21.48864 -21.12336 -19.94524 -19.56447 -18.07773 -17.83605 -17.57643 -17.23543 -16.87058 -16.63678 -16.34950 -16.09178 -15.81342 -15.65551 -15.39886 -15.20524 -14.48249 -14.41068 -14.27863 -14.09762 -13.72890 -13.56908 -13.35288 -13.26724 -13.15258 -13.02394 -12.81417 -12.72238 -12.61029 -12.42947 -12.33625 -12.22535 -12.17035 -12.07539 -11.91752 -11.75084 -11.27215 -11.14225 -10.93516 -10.71936 -10.45135 -9.59019 -9.35155 -8.56106 -6.36554 0.57016 0.66340 1.00981 1.22944 1.36398 1.51269 1.56308 1.85812 2.09972 2.58059 2.94476 3.03863 3.12167 3.81462 3.86151 3.89264 3.95353 3.98967 4.04217 4.12932 4.24493 4.35938 4.45443 4.50156 4.63434 4.71413 4.74009 4.79020 4.83638 4.83978 4.87271 4.94252 4.98799 5.09265 5.14504 5.22296 5.26137 5.29635 5.38649 5.52827 5.61303 5.68688 5.74384 5.77748 5.85089 6.27476 6.39896 6.51908 6.87971 7.39886 7.64679 8.63153 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.003561 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.376265 B = 7860.306449 C = 9166.332342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.136 4.136 4 C -0.185 4.185 5 O -0.371 6.371 6 C 0.657 3.343 7 O -0.559 6.559 8 N -0.695 5.695 9 C 0.211 3.789 10 H 0.110 0.890 11 C -0.083 4.083 12 C -0.067 4.067 13 C -0.122 4.122 14 C -0.119 4.119 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.117 4.117 18 C 0.394 3.606 19 O -0.569 6.569 20 O -0.227 6.227 21 C -0.423 4.423 22 H 0.086 0.914 23 C 0.002 3.998 24 N -0.895 5.895 25 Si 1.016 2.984 26 H -0.263 1.263 27 H -0.261 1.261 28 H -0.260 1.260 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.109 0.891 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 12.971 -16.347 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.193 4.193 4 C -0.242 4.242 5 O -0.286 6.286 6 C 0.411 3.589 7 O -0.447 6.447 8 N -0.357 5.357 9 C 0.105 3.895 10 H 0.128 0.872 11 C -0.121 4.121 12 C -0.067 4.067 13 C -0.140 4.140 14 C -0.136 4.136 15 C -0.142 4.142 16 C -0.126 4.126 17 C -0.135 4.135 18 C 0.241 3.759 19 O -0.467 6.467 20 O -0.134 6.134 21 C -0.498 4.498 22 H 0.104 0.896 23 C -0.200 4.200 24 N -0.532 5.532 25 Si 0.835 3.165 26 H -0.187 1.187 27 H -0.185 1.185 28 H -0.185 1.185 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.127 0.873 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.146 12.744 -16.611 21.172 hybrid contribution 0.026 -0.141 1.497 1.503 sum 3.173 12.603 -15.115 19.934 Atomic orbital electron populations 1.22472 0.94474 1.03664 1.03111 1.22413 0.94242 0.92550 0.81807 1.21886 1.02418 0.90934 1.04024 1.22718 1.01560 1.03501 0.96418 1.86308 1.71803 1.22718 1.47786 1.17761 0.78736 0.80738 0.81666 1.90937 1.40756 1.70282 1.42743 1.44303 1.55849 1.10896 1.24602 1.19781 1.01600 0.80643 0.87508 0.87182 1.20916 0.99300 0.99671 0.92251 1.19454 0.97074 0.96828 0.93373 1.21070 0.98112 0.99844 0.94940 1.21254 0.99571 0.98472 0.94345 1.21292 0.96222 0.96167 1.00549 1.21160 0.98763 0.99493 0.93220 1.20923 0.99361 0.97466 0.95792 1.23780 0.78155 0.81952 0.92003 1.90534 1.49724 1.50813 1.55603 1.83874 1.72286 1.28931 1.28288 1.21433 1.50194 0.98616 0.79581 0.89638 1.26503 0.94354 0.93386 1.05751 1.70065 1.41864 1.03836 1.37407 0.84708 0.79752 0.78351 0.73734 1.18714 1.18473 1.18455 0.92819 0.89020 0.91889 0.91170 0.87815 0.91859 0.89828 0.89611 0.91897 0.75060 0.89461 0.89983 0.86998 0.84930 0.84139 0.84708 0.87339 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 8.37 71.98 0.60 -3.34 16 2 C 0.13 2.68 1.13 -10.79 -0.01 2.67 16 3 C -0.14 -2.02 8.85 71.98 0.64 -1.39 16 4 C -0.19 -3.57 7.33 71.98 0.53 -3.04 16 5 O -0.37 -10.35 9.94 -55.40 -0.55 -10.90 16 6 C 0.66 20.86 6.05 129.79 0.79 21.65 16 7 O -0.56 -18.57 8.90 19.80 0.18 -18.39 16 8 N -0.70 -23.72 4.84 -573.72 -2.78 -26.50 16 9 C 0.21 8.11 2.76 44.24 0.12 8.23 16 10 H 0.11 4.40 7.58 -2.38 -0.02 4.38 16 11 C -0.08 -2.87 4.99 29.85 0.15 -2.72 16 12 C -0.07 -2.07 3.37 -19.86 -0.07 -2.14 16 13 C -0.12 -3.64 9.59 22.27 0.21 -3.43 16 14 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 15 C -0.12 -2.71 9.93 22.27 0.22 -2.49 16 16 C -0.11 -2.45 6.99 22.27 0.16 -2.29 16 17 C -0.12 -3.19 6.74 22.27 0.15 -3.04 16 18 C 0.39 19.27 7.27 71.24 0.52 19.79 16 19 O -0.57 -29.69 15.07 20.78 0.31 -29.37 16 20 O -0.23 -12.90 9.56 14.72 0.14 -12.76 16 21 C -0.42 -24.88 9.64 67.94 0.66 -24.23 16 22 H 0.09 5.07 6.86 -2.91 -0.02 5.05 16 23 C 0.00 0.08 5.49 84.87 0.47 0.55 16 24 N -0.90 -51.49 13.67 21.62 0.30 -51.20 16 25 Si 1.02 42.33 29.55 68.60 2.03 44.36 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 28 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.76 5.88 -2.38 -0.01 1.74 16 32 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 2.03 3.63 -2.38 -0.01 2.02 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.13 7.61 -2.39 -0.02 1.11 16 38 H 0.41 14.00 7.90 -92.71 -0.73 13.27 16 39 H 0.09 3.29 7.94 -2.39 -0.02 3.27 16 40 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 41 H 0.11 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.14 2.36 7.58 -2.91 -0.02 2.34 16 45 H 0.11 2.90 8.05 -2.92 -0.02 2.88 16 46 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -69.11 373.86 5.24 -63.87 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: 0.27 Total: 38.85 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.35 Total: 2.04 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.48 Total: -77.70 kcal Atomic # 8 Polarization: -71.51 SS G_CDS: 0.08 Total: -71.43 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.11 5.24 -63.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027413130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.083 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds