Wall clock time and date at job start Tue Mar 31 2020 18:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38751 * 120.05773 * 0.24929 * 3 2 1 5 5 C 1.38127 * 119.93941 * 180.31926 * 4 3 2 6 6 C 1.38290 * 120.05954 * 359.68569 * 5 4 3 7 7 C 1.38242 * 120.10725 * 0.02562 * 6 5 4 8 8 C 1.38161 * 120.05933 * 0.02785 * 7 6 5 9 9 C 1.50697 * 120.03050 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47070 * 359.97438 * 9 8 7 11 11 C 1.53002 * 109.47419 * 240.00239 * 9 8 7 12 12 C 1.50700 * 109.47266 * 119.99729 * 9 8 7 13 13 O 1.20822 * 119.99958 * 0.02562 * 12 9 8 14 14 O 1.34234 * 120.00068 * 180.02562 * 12 9 8 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 9 16 16 C 1.50704 * 109.47016 * 179.97438 * 15 14 12 17 17 O 1.21274 * 119.99890 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99643 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99747 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47453 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00352 * 180.02562 * 20 19 18 23 23 N 1.31522 * 120.00174 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00062 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47099 * 90.00017 * 24 22 20 26 26 H 1.48495 * 109.47185 * 210.00003 * 24 22 20 27 27 H 1.48499 * 109.46984 * 330.00233 * 24 22 20 28 28 H 1.08999 * 109.47294 * 60.00043 * 1 2 3 29 29 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47397 * 300.00007 * 1 2 3 31 31 H 1.07995 * 120.03068 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.96549 * 179.70237 * 5 4 3 33 33 H 1.07994 * 119.94332 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.96737 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47453 * 180.02562 * 10 9 8 36 36 H 1.08996 * 109.47248 * 300.00354 * 10 9 8 37 37 H 1.09005 * 109.46932 * 60.00004 * 10 9 8 38 38 H 1.09002 * 109.46768 * 299.99449 * 11 9 8 39 39 H 1.08996 * 109.46948 * 59.99616 * 11 9 8 40 40 H 1.08996 * 109.46989 * 180.02562 * 11 9 8 41 41 H 1.08996 * 109.47465 * 299.99911 * 15 14 12 42 42 H 1.08999 * 109.47008 * 59.99921 * 15 14 12 43 43 H 0.96994 * 120.00272 * 359.97438 * 18 16 15 44 44 H 1.08998 * 109.47454 * 299.99683 * 19 18 16 45 45 H 1.09012 * 109.47009 * 59.99344 * 19 18 16 46 46 H 0.96994 * 119.99960 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6759 -0.0068 7 6 4.0559 2.5172 -0.0060 8 6 3.4311 1.2849 -0.0004 9 6 4.2536 0.0222 -0.0001 10 6 5.7407 0.3823 -0.0072 11 6 3.9232 -0.8021 -1.2460 12 6 3.9372 -0.7832 1.2337 13 8 3.1265 -0.3741 2.0307 14 8 4.5560 -1.9551 1.4472 15 6 4.2023 -2.6766 2.6565 16 6 4.9909 -3.9589 2.7253 17 8 5.7736 -4.2376 1.8418 18 7 4.8256 -4.7966 3.7681 19 6 5.5918 -6.0435 3.8346 20 6 5.2248 -6.7923 5.0898 21 1 4.4936 -6.3808 5.7699 22 6 5.8225 -8.0027 5.3702 23 7 5.5018 -8.6564 6.4654 24 14 7.0878 -8.7142 4.1944 25 1 8.4416 -8.2390 4.5773 26 1 7.0465 -10.1971 4.2610 27 1 6.7810 -8.2720 2.8104 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2128 2.3204 0.0097 32 1 1.3338 4.5114 -0.0023 33 1 3.7921 4.6381 -0.0116 34 1 5.1343 2.5753 -0.0097 35 1 6.3357 -0.5309 -0.0074 36 1 5.9693 0.9647 -0.8997 37 1 5.9765 0.9698 0.8802 38 1 2.8638 -1.0587 -1.2414 39 1 4.1521 -0.2195 -2.1383 40 1 4.5178 -1.7156 -1.2455 41 1 4.4315 -2.0616 3.5268 42 1 3.1368 -2.9059 2.6443 43 1 4.1994 -4.5739 4.4745 44 1 5.3620 -6.6581 2.9643 45 1 6.6576 -5.8148 3.8467 46 1 5.9220 -9.5081 6.6625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060513263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:03 Heat of formation + Delta-G solvation = -131.971531 kcal Electronic energy + Delta-G solvation = -28999.771778 eV Core-core repulsion = 24855.302578 eV Total energy + Delta-G solvation = -4144.469200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28671 -40.04948 -38.82417 -37.79267 -36.34918 -35.59465 -34.34984 -32.42033 -30.61626 -30.24422 -29.38380 -27.91920 -27.19444 -27.11270 -24.42540 -22.83904 -22.15870 -21.89029 -20.08763 -19.95628 -18.39501 -17.58819 -17.36530 -16.77758 -16.56511 -16.20579 -15.96512 -15.83345 -15.45018 -15.06996 -14.77591 -14.60705 -14.36469 -14.14124 -13.91255 -13.41765 -13.32634 -12.96700 -12.78795 -12.58035 -12.51753 -12.37257 -12.18469 -12.08634 -12.00794 -11.99769 -11.75960 -11.36939 -11.25952 -11.06268 -10.85017 -10.80585 -10.62930 -10.28005 -9.99686 -9.53590 -9.31347 -9.17564 -8.81185 -8.38642 -8.24947 -6.23791 -4.26723 0.98196 1.20395 2.26462 2.47462 3.05065 3.06682 3.25747 3.32486 3.40544 3.50152 3.93711 4.16471 4.31379 4.44412 4.61395 4.72014 4.75508 4.81818 4.83820 4.91741 5.02673 5.10997 5.13634 5.15913 5.23521 5.25352 5.27327 5.34883 5.40419 5.51062 5.59916 5.63267 5.69961 5.88309 6.03658 6.10058 6.15468 6.25000 6.42018 6.51135 6.74576 7.01940 7.11753 7.14660 7.32756 7.78914 8.06801 8.42731 8.69630 8.81693 9.35398 10.87992 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.002272 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.986505 B =12321.205445 C =12770.186364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.161 3.839 4 C -0.213 4.213 5 C -0.078 4.078 6 C -0.162 4.162 7 C -0.073 4.073 8 C -0.106 4.106 9 C 0.003 3.997 10 C -0.148 4.148 11 C -0.143 4.143 12 C 0.473 3.527 13 O -0.496 6.496 14 O -0.327 6.327 15 C 0.049 3.951 16 C 0.503 3.497 17 O -0.536 6.536 18 N -0.700 5.700 19 C 0.222 3.778 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.891 5.891 24 Si 0.877 3.123 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.399 0.601 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 25.253 -15.904 30.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.115 3.885 4 C -0.231 4.231 5 C -0.096 4.096 6 C -0.180 4.180 7 C -0.091 4.091 8 C -0.107 4.107 9 C 0.002 3.998 10 C -0.205 4.205 11 C -0.200 4.200 12 C 0.315 3.685 13 O -0.382 6.382 14 O -0.242 6.242 15 C -0.028 4.028 16 C 0.286 3.714 17 O -0.414 6.414 18 N -0.351 5.351 19 C 0.101 3.899 20 C -0.583 4.583 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.528 5.528 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.184 1.184 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.232 0.768 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.672 24.736 -16.154 30.523 hybrid contribution -0.179 -0.189 0.227 0.345 sum -7.851 24.547 -15.927 30.296 Atomic orbital electron populations 1.23054 0.78536 1.04062 1.01114 1.86130 1.21216 1.26551 1.87861 1.18740 0.91465 0.84452 0.93857 1.21195 1.00020 0.92297 1.09614 1.20949 0.94750 0.96890 0.96976 1.20998 0.93885 0.98238 1.04911 1.20997 1.00375 0.90694 0.97051 1.18722 0.90192 0.93952 1.07857 1.19120 0.96954 0.91517 0.92216 1.22013 0.92104 1.03485 1.02893 1.21927 1.03608 0.99931 0.94502 1.23437 0.78105 0.79661 0.87343 1.90642 1.31971 1.69686 1.45929 1.86537 1.62731 1.32647 1.42296 1.22774 1.00653 0.92622 0.86754 1.19942 0.83634 0.84590 0.83228 1.90689 1.36950 1.75430 1.38299 1.46065 1.44084 1.22182 1.22766 1.19544 0.91497 0.80739 0.98147 1.21070 1.26414 1.05253 1.05585 0.90146 1.24795 0.96387 0.96260 0.95170 1.69879 1.42794 1.15469 1.24672 0.86812 0.82065 0.78494 0.82308 1.19789 1.20855 1.18449 0.92808 0.88248 0.92577 0.85464 0.85892 0.85793 0.84718 0.90126 0.90607 0.91712 0.90805 0.91236 0.90500 0.88567 0.88521 0.76755 0.95450 0.95909 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.51 6.57 -37.46 -0.25 -3.76 16 3 C 0.16 1.82 5.66 -39.22 -0.22 1.60 16 4 C -0.21 -1.99 9.04 -39.43 -0.36 -2.35 16 5 C -0.08 -0.64 10.04 -39.60 -0.40 -1.03 16 6 C -0.16 -1.32 10.04 -39.56 -0.40 -1.72 16 7 C -0.07 -0.67 8.97 -39.61 -0.36 -1.03 16 8 C -0.11 -1.18 4.38 -104.48 -0.46 -1.64 16 9 C 0.00 0.04 0.70 -156.81 -0.11 -0.07 16 10 C -0.15 -1.37 7.06 37.16 0.26 -1.11 16 11 C -0.14 -1.49 8.19 37.16 0.30 -1.19 16 12 C 0.47 6.88 5.93 36.01 0.21 7.09 16 13 O -0.50 -8.05 14.23 -24.95 -0.36 -8.40 16 14 O -0.33 -5.23 9.56 -45.92 -0.44 -5.67 16 15 C 0.05 0.76 5.94 36.01 0.21 0.98 16 16 C 0.50 9.77 7.91 -10.98 -0.09 9.68 16 17 O -0.54 -12.45 16.50 -14.10 -0.23 -12.68 16 18 N -0.70 -14.11 5.55 -61.47 -0.34 -14.45 16 19 C 0.22 5.43 4.50 -5.20 -0.02 5.40 16 20 C -0.55 -14.84 9.83 -34.44 -0.34 -15.18 16 21 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 22 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 23 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 24 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 28 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.41 7.65 -51.93 -0.40 0.02 16 31 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.14 0.95 5.89 -52.48 -0.31 0.64 16 35 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.08 0.52 7.52 -51.93 -0.39 0.13 16 37 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 38 H 0.07 0.82 6.12 -51.93 -0.32 0.51 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 41 H 0.10 1.32 8.13 -51.93 -0.42 0.89 16 42 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 43 H 0.40 6.97 8.32 -40.82 -0.34 6.63 16 44 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 45 H 0.02 0.58 7.57 -51.92 -0.39 0.19 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -34.87 380.87 -7.22 -42.09 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.60 Total: 3.33 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.86 Total: 2.73 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.43 Total: -40.00 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.27 Total: -30.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.87 -7.22 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060513263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.881 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds