Wall clock time and date at job start Tue Mar 31 2020 18:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38751 * 120.05773 * 0.24929 * 3 2 1 5 5 C 1.38127 * 119.93941 * 180.31926 * 4 3 2 6 6 C 1.38290 * 120.05954 * 359.68569 * 5 4 3 7 7 C 1.38242 * 120.10725 * 0.02562 * 6 5 4 8 8 C 1.38161 * 120.05933 * 0.02785 * 7 6 5 9 9 C 1.50697 * 120.03050 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47070 * 359.97438 * 9 8 7 11 11 C 1.53002 * 109.47419 * 240.00239 * 9 8 7 12 12 C 1.50700 * 109.47266 * 119.99729 * 9 8 7 13 13 O 1.20822 * 119.99958 * 0.02562 * 12 9 8 14 14 O 1.34234 * 120.00068 * 180.02562 * 12 9 8 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 9 16 16 C 1.50704 * 109.47016 * 179.97438 * 15 14 12 17 17 O 1.21274 * 119.99890 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99643 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99747 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47453 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00352 * 180.02562 * 20 19 18 23 23 N 1.31522 * 120.00174 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00062 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47099 * 90.00017 * 24 22 20 26 26 H 1.48495 * 109.47185 * 210.00003 * 24 22 20 27 27 H 1.48499 * 109.46984 * 330.00233 * 24 22 20 28 28 H 1.08999 * 109.47294 * 60.00043 * 1 2 3 29 29 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47397 * 300.00007 * 1 2 3 31 31 H 1.07995 * 120.03068 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.96549 * 179.70237 * 5 4 3 33 33 H 1.07994 * 119.94332 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.96737 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47453 * 180.02562 * 10 9 8 36 36 H 1.08996 * 109.47248 * 300.00354 * 10 9 8 37 37 H 1.09005 * 109.46932 * 60.00004 * 10 9 8 38 38 H 1.09002 * 109.46768 * 299.99449 * 11 9 8 39 39 H 1.08996 * 109.46948 * 59.99616 * 11 9 8 40 40 H 1.08996 * 109.46989 * 180.02562 * 11 9 8 41 41 H 1.08996 * 109.47465 * 299.99911 * 15 14 12 42 42 H 1.08999 * 109.47008 * 59.99921 * 15 14 12 43 43 H 0.96994 * 120.00272 * 359.97438 * 18 16 15 44 44 H 1.08998 * 109.47454 * 299.99683 * 19 18 16 45 45 H 1.09012 * 109.47009 * 59.99344 * 19 18 16 46 46 H 0.96994 * 119.99960 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6759 -0.0068 7 6 4.0559 2.5172 -0.0060 8 6 3.4311 1.2849 -0.0004 9 6 4.2536 0.0222 -0.0001 10 6 5.7407 0.3823 -0.0072 11 6 3.9232 -0.8021 -1.2460 12 6 3.9372 -0.7832 1.2337 13 8 3.1265 -0.3741 2.0307 14 8 4.5560 -1.9551 1.4472 15 6 4.2023 -2.6766 2.6565 16 6 4.9909 -3.9589 2.7253 17 8 5.7736 -4.2376 1.8418 18 7 4.8256 -4.7966 3.7681 19 6 5.5918 -6.0435 3.8346 20 6 5.2248 -6.7923 5.0898 21 1 4.4936 -6.3808 5.7699 22 6 5.8225 -8.0027 5.3702 23 7 5.5018 -8.6564 6.4654 24 14 7.0878 -8.7142 4.1944 25 1 8.4416 -8.2390 4.5773 26 1 7.0465 -10.1971 4.2610 27 1 6.7810 -8.2720 2.8104 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2128 2.3204 0.0097 32 1 1.3338 4.5114 -0.0023 33 1 3.7921 4.6381 -0.0116 34 1 5.1343 2.5753 -0.0097 35 1 6.3357 -0.5309 -0.0074 36 1 5.9693 0.9647 -0.8997 37 1 5.9765 0.9698 0.8802 38 1 2.8638 -1.0587 -1.2414 39 1 4.1521 -0.2195 -2.1383 40 1 4.5178 -1.7156 -1.2455 41 1 4.4315 -2.0616 3.5268 42 1 3.1368 -2.9059 2.6443 43 1 4.1994 -4.5739 4.4745 44 1 5.3620 -6.6581 2.9643 45 1 6.6576 -5.8148 3.8467 46 1 5.9220 -9.5081 6.6625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060513263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:02 Heat of formation + Delta-G solvation = -153.390173 kcal Electronic energy + Delta-G solvation = -29000.700560 eV Core-core repulsion = 24855.302578 eV Total energy + Delta-G solvation = -4145.397982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22312 -41.06515 -40.32068 -38.51994 -37.50957 -36.44333 -36.20842 -34.46981 -31.39334 -31.11555 -30.72890 -28.85499 -28.60839 -27.81390 -25.36977 -24.21546 -23.36129 -22.76530 -21.74074 -20.89812 -19.43118 -18.98610 -18.50395 -18.14461 -17.79233 -17.34164 -16.96648 -16.88864 -16.53375 -16.34046 -16.19588 -15.85528 -15.28669 -15.07058 -14.93534 -14.73837 -14.52831 -14.40566 -14.03916 -13.96126 -13.63077 -13.31982 -13.19424 -13.13304 -13.06201 -12.80113 -12.71060 -12.70982 -12.44638 -12.05440 -11.93997 -11.93661 -11.85910 -11.68250 -11.53869 -11.36407 -10.96247 -10.92825 -10.05423 -9.84597 -9.07051 -8.40610 -6.48369 0.29972 0.53989 1.16356 1.29801 1.33753 1.37318 1.47789 1.50388 2.27928 2.41154 2.46447 2.87445 2.94605 3.38177 3.62519 3.71528 3.80479 3.95694 4.01303 4.02421 4.05479 4.15881 4.29427 4.36546 4.44588 4.54218 4.69258 4.70063 4.71786 4.73853 4.79580 4.83509 4.85555 4.99529 5.03845 5.17635 5.21153 5.23281 5.33426 5.39100 5.44782 5.49578 5.61323 5.89986 6.04960 6.47828 6.50835 6.63401 6.73396 7.10296 7.25614 8.73956 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023744 B = 0.002272 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.986505 B =12321.205445 C =12770.186364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.329 6.329 3 C 0.138 3.862 4 C -0.223 4.223 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.078 4.078 8 C -0.129 4.129 9 C 0.004 3.996 10 C -0.145 4.145 11 C -0.138 4.138 12 C 0.471 3.529 13 O -0.516 6.516 14 O -0.342 6.342 15 C 0.058 3.942 16 C 0.507 3.493 17 O -0.574 6.574 18 N -0.698 5.698 19 C 0.233 3.767 20 C -0.548 4.548 21 H 0.060 0.940 22 C 0.026 3.974 23 N -0.930 5.930 24 Si 0.938 3.062 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.259 1.259 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.412 0.588 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 27.394 -17.225 33.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.242 6.242 3 C 0.092 3.908 4 C -0.241 4.241 5 C -0.098 4.098 6 C -0.182 4.182 7 C -0.096 4.096 8 C -0.130 4.130 9 C 0.003 3.997 10 C -0.202 4.202 11 C -0.195 4.195 12 C 0.314 3.686 13 O -0.403 6.403 14 O -0.258 6.258 15 C -0.019 4.019 16 C 0.293 3.707 17 O -0.454 6.454 18 N -0.349 5.349 19 C 0.110 3.890 20 C -0.586 4.586 21 H 0.079 0.921 22 C -0.174 4.174 23 N -0.569 5.569 24 Si 0.761 3.239 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.183 1.183 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.248 0.752 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.496 26.903 -17.464 32.939 hybrid contribution -0.341 -0.761 0.666 1.067 sum -7.837 26.142 -16.798 32.047 Atomic orbital electron populations 1.23230 0.77235 1.04848 1.02010 1.86085 1.22775 1.27232 1.88151 1.19041 0.91972 0.84925 0.94846 1.21463 1.00873 0.92273 1.09530 1.21337 0.95257 0.97407 0.95755 1.21370 0.94043 0.99045 1.03791 1.21292 1.01512 0.90321 0.96469 1.18877 0.90342 0.94287 1.09469 1.19244 0.98351 0.91450 0.90631 1.22038 0.90369 1.03371 1.04440 1.21890 1.02687 0.99740 0.95153 1.24176 0.77370 0.78975 0.88033 1.90620 1.32810 1.69970 1.46899 1.86547 1.63340 1.33501 1.42381 1.22665 1.00660 0.90864 0.87754 1.20499 0.82999 0.85302 0.81924 1.90669 1.38712 1.76476 1.39576 1.45868 1.44062 1.21234 1.23742 1.19177 0.91589 0.82061 0.96217 1.21264 1.25702 1.05529 1.06131 0.92143 1.25610 0.98378 0.96784 0.96670 1.69981 1.44295 1.16197 1.26427 0.85849 0.79776 0.78153 0.80089 1.18894 1.19849 1.18282 0.91043 0.87605 0.92488 0.84089 0.83350 0.83245 0.82890 0.91320 0.87861 0.91364 0.91864 0.89142 0.91580 0.86426 0.86648 0.75197 0.96462 0.96527 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -7.51 6.57 -75.23 -0.49 -8.00 16 3 C 0.14 3.00 5.66 22.51 0.13 3.13 16 4 C -0.22 -3.83 9.04 22.37 0.20 -3.63 16 5 C -0.08 -1.11 10.04 22.26 0.22 -0.88 16 6 C -0.16 -2.22 10.04 22.28 0.22 -2.00 16 7 C -0.08 -1.26 8.97 22.25 0.20 -1.06 16 8 C -0.13 -2.71 4.38 -19.77 -0.09 -2.79 16 9 C 0.00 0.10 0.70 -53.67 -0.04 0.06 16 10 C -0.15 -2.48 7.06 71.98 0.51 -1.97 16 11 C -0.14 -2.81 8.19 71.98 0.59 -2.22 16 12 C 0.47 13.50 5.93 71.24 0.42 13.92 16 13 O -0.52 -16.50 14.23 27.91 0.40 -16.10 16 14 O -0.34 -10.81 9.56 -45.10 -0.43 -11.24 16 15 C 0.06 1.72 5.94 71.24 0.42 2.15 16 16 C 0.51 19.46 7.91 87.66 0.69 20.15 16 17 O -0.57 -26.65 16.50 15.79 0.26 -26.39 16 18 N -0.70 -27.84 5.55 -466.79 -2.59 -30.43 16 19 C 0.23 11.33 4.50 85.63 0.38 11.72 16 20 C -0.55 -30.08 9.83 25.60 0.25 -29.83 16 21 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 22 C 0.03 1.47 5.47 84.65 0.46 1.93 16 23 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 24 Si 0.94 43.73 27.47 68.60 1.88 45.61 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 28 H 0.07 0.77 7.67 -2.39 -0.02 0.76 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.06 0.81 7.65 -2.39 -0.02 0.79 16 31 H 0.14 1.86 6.30 -2.91 -0.02 1.84 16 32 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.15 1.73 5.89 -2.91 -0.02 1.72 16 35 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 36 H 0.10 1.16 7.52 -2.39 -0.02 1.14 16 37 H 0.07 1.10 7.51 -2.38 -0.02 1.08 16 38 H 0.06 1.42 6.12 -2.39 -0.01 1.40 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 41 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 42 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 43 H 0.41 14.20 8.32 -92.71 -0.77 13.43 16 44 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 45 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 46 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -75.20 380.87 5.21 -70.00 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.18 Total: 21.56 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.70 Total: 10.09 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.29 Total: -85.53 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -0.27 Total: -61.73 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -75.20 5.21 -70.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060513263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.394 kcal (2) G-P(sol) polarization free energy of solvation -75.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds