Wall clock time and date at job start Tue Mar 31 2020 19:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47230 * 2 1 4 4 C 1.52999 * 109.47080 * 239.99975 * 2 1 3 5 5 O 1.42899 * 109.47378 * 119.99633 * 2 1 3 6 6 C 1.42907 * 113.99640 * 60.00084 * 5 2 1 7 7 C 1.53000 * 109.46924 * 180.02562 * 6 5 2 8 8 O 1.45195 * 109.47573 * 64.99650 * 7 6 5 9 9 C 1.34752 * 117.00253 * 179.97438 * 8 7 6 10 10 O 1.21510 * 119.99813 * 0.02562 * 9 8 7 11 11 C 1.47460 * 119.99938 * 180.02562 * 9 8 7 12 12 C 1.39839 * 120.06259 * 180.02562 * 11 9 8 13 13 C 1.37614 * 119.92694 * 180.29959 * 12 11 9 14 14 C 1.39272 * 120.06806 * 359.44512 * 13 12 11 15 15 N 1.39071 * 119.93249 * 180.25894 * 14 13 12 16 16 C 1.34771 * 119.99977 * 213.94198 * 15 14 13 17 17 O 1.21726 * 120.00405 * 5.27935 * 16 15 14 18 18 C 1.46202 * 120.00170 * 185.27935 * 16 15 14 19 19 H 1.07998 * 119.99946 * 359.97438 * 18 16 15 20 20 C 1.40121 * 120.00108 * 179.97438 * 18 16 15 21 21 N 1.30640 * 120.00103 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00046 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.47148 * 59.99808 * 22 20 18 24 24 H 1.48499 * 109.47211 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47203 * 300.00119 * 22 20 18 26 26 C 1.39269 * 120.13235 * 0.55252 * 14 13 12 27 27 C 1.37607 * 120.07078 * 359.73074 * 26 14 13 28 28 H 1.09006 * 109.46991 * 300.00137 * 1 2 3 29 29 H 1.08999 * 109.47163 * 59.99721 * 1 2 3 30 30 H 1.08997 * 109.47020 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47090 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46594 * 300.00110 * 3 2 1 33 33 H 1.08997 * 109.47344 * 59.99765 * 3 2 1 34 34 H 1.08997 * 109.46965 * 299.99753 * 4 2 1 35 35 H 1.08993 * 109.47263 * 60.00264 * 4 2 1 36 36 H 1.09004 * 109.47354 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47107 * 59.99949 * 6 5 2 38 38 H 1.08998 * 109.47015 * 299.99981 * 6 5 2 39 39 H 1.09004 * 109.47029 * 304.99792 * 7 6 5 40 40 H 1.09002 * 109.46941 * 185.00095 * 7 6 5 41 41 H 1.07993 * 120.04073 * 0.02610 * 12 11 9 42 42 H 1.08001 * 119.96523 * 179.70162 * 13 12 11 43 43 H 0.97001 * 119.99876 * 33.94416 * 15 14 13 44 44 H 0.96998 * 119.99977 * 180.02562 * 21 20 18 45 45 H 1.08003 * 119.96184 * 179.69770 * 26 14 13 46 46 H 1.08004 * 120.03417 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0063 -0.6735 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1495 -2.6536 2.5451 8 8 1.5717 -1.9887 3.6993 9 6 1.9669 -2.4178 4.9140 10 8 2.7728 -3.3225 5.0061 11 6 1.4214 -1.7894 6.1314 12 6 1.8311 -2.2333 7.3926 13 6 1.3155 -1.6491 8.5269 14 6 0.3955 -0.6090 8.4196 15 7 -0.1196 -0.0170 9.5677 16 6 -1.3891 0.4353 9.5812 17 8 -2.1149 0.2403 8.6236 18 6 -1.8946 1.1602 10.7459 19 1 -1.2508 1.3328 11.5957 20 6 -3.2143 1.6309 10.7596 21 7 -3.9929 1.4225 9.7315 22 14 -3.8603 2.5565 12.2481 23 1 -3.0420 3.7764 12.4660 24 1 -5.2744 2.9449 12.0140 25 1 -3.7780 1.6846 13.4473 26 6 -0.0143 -0.1648 7.1649 27 6 0.4932 -0.7489 6.0270 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.9491 -2.5915 0.4008 38 1 0.4958 -2.0777 1.2908 39 1 3.2327 -2.5318 2.5602 40 1 1.9028 -3.7149 2.5757 41 1 2.5479 -3.0367 7.4764 42 1 1.6279 -1.9947 9.5013 43 1 0.4348 0.0704 10.3589 44 1 -4.9063 1.7487 9.7409 45 1 -0.7316 0.6387 7.0849 46 1 0.1746 -0.4042 5.0542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063904173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:05 Heat of formation + Delta-G solvation = -153.937623 kcal Electronic energy + Delta-G solvation = -27983.129951 eV Core-core repulsion = 23837.708229 eV Total energy + Delta-G solvation = -4145.421721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33855 -39.34762 -39.00073 -37.02924 -36.19597 -33.86727 -33.61845 -32.57847 -30.67115 -30.31539 -29.28877 -27.71821 -27.64202 -26.52183 -24.01535 -22.60887 -22.27221 -20.98638 -20.25725 -19.76816 -17.86824 -17.61782 -17.00950 -16.89576 -16.25232 -16.07561 -15.61161 -15.44334 -15.16027 -14.55299 -14.26282 -14.01054 -13.96143 -13.79207 -13.33514 -13.20705 -12.99431 -12.68433 -12.67342 -12.61631 -12.36988 -12.19420 -12.01722 -11.99727 -11.87485 -11.73821 -11.44651 -11.36826 -11.13886 -10.84888 -10.80089 -10.65954 -10.54795 -10.43812 -10.25671 -9.75632 -9.47712 -8.98912 -8.59554 -7.89082 -7.29361 -6.44148 -4.92345 1.17721 1.89313 2.79080 2.89423 3.04700 3.09583 3.11300 3.34762 3.91358 4.15418 4.43162 4.46251 4.47763 4.54116 4.70527 4.78908 4.83788 4.93624 5.10564 5.13892 5.20354 5.27175 5.31793 5.39117 5.41124 5.47592 5.52652 5.55403 5.57051 5.63415 5.74418 5.79270 5.94347 5.99087 6.00471 6.10432 6.39737 6.49274 6.73529 6.81912 6.91225 7.02052 7.17476 7.22487 7.59410 7.88993 8.00827 8.03110 8.75190 9.05285 10.25383 10.45891 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.002267 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.201866 B =12347.523391 C =13918.639838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.058 3.942 7 C 0.071 3.929 8 O -0.345 6.345 9 C 0.519 3.481 10 O -0.527 6.527 11 C -0.187 4.187 12 C -0.027 4.027 13 C -0.194 4.194 14 C 0.236 3.764 15 N -0.694 5.694 16 C 0.539 3.461 17 O -0.555 6.555 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.086 3.914 21 N -0.756 5.756 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.148 4.148 27 C -0.036 4.036 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.397 0.603 44 H 0.274 0.726 45 H 0.146 0.854 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 -3.362 -16.432 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.288 6.288 6 C -0.019 4.019 7 C -0.003 4.003 8 O -0.261 6.261 9 C 0.366 3.634 10 O -0.418 6.418 11 C -0.190 4.190 12 C -0.047 4.047 13 C -0.216 4.216 14 C 0.134 3.866 15 N -0.336 5.336 16 C 0.346 3.654 17 O -0.436 6.436 18 C -0.571 4.571 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.384 5.384 22 Si 0.739 3.261 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.169 4.169 27 C -0.055 4.055 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.231 0.769 44 H 0.085 0.915 45 H 0.164 0.836 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.001 -3.566 -17.003 20.046 hybrid contribution -0.164 0.115 0.863 0.885 sum 9.838 -3.450 -16.140 19.215 Atomic orbital electron populations 1.22443 0.95488 1.02623 1.03175 1.21516 0.93377 0.93334 0.85141 1.21757 1.01853 0.93237 1.02686 1.22448 1.02175 1.00926 0.98094 1.88067 1.74146 1.23414 1.43132 1.22601 0.99932 0.84050 0.95307 1.23006 0.99002 0.96029 0.82280 1.86630 1.64979 1.60029 1.14507 1.21259 0.78405 0.80179 0.83507 1.90778 1.33520 1.29865 1.87673 1.18783 1.06324 1.03847 0.90029 1.20822 0.96485 0.97178 0.90167 1.20825 1.03892 0.98235 0.98646 1.18291 0.90421 0.89357 0.88545 1.44300 1.15845 1.61036 1.12416 1.18452 0.78104 0.79474 0.89384 1.90655 1.55481 1.59855 1.37643 1.20838 0.97856 1.36444 1.01984 0.90855 1.25759 0.96376 0.94693 0.96789 1.69965 1.06557 1.33847 1.28048 0.86305 0.78172 0.80166 0.81483 1.19041 1.20331 1.19069 1.21325 1.02462 1.02830 0.90316 1.21247 0.92538 0.92700 0.98995 0.91168 0.91580 0.92209 0.91882 0.91211 0.91433 0.92279 0.91454 0.91713 0.91036 0.91681 0.90538 0.89850 0.85253 0.85500 0.76918 0.91505 0.83637 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.25 37.16 0.31 -1.18 16 2 C 0.11 0.93 1.14 -90.62 -0.10 0.83 16 3 C -0.14 -1.13 8.84 37.16 0.33 -0.80 16 4 C -0.18 -1.22 8.25 37.16 0.31 -0.91 16 5 O -0.37 -4.23 9.96 -38.80 -0.39 -4.61 16 6 C 0.06 0.55 5.53 37.16 0.21 0.76 16 7 C 0.07 0.82 5.85 37.16 0.22 1.04 16 8 O -0.34 -5.20 9.43 -43.42 -0.41 -5.61 16 9 C 0.52 8.70 7.89 34.49 0.27 8.97 16 10 O -0.53 -9.48 16.13 -19.27 -0.31 -9.79 16 11 C -0.19 -3.24 5.88 -104.95 -0.62 -3.86 16 12 C -0.03 -0.45 9.58 -39.21 -0.38 -0.83 16 13 C -0.19 -3.28 9.94 -39.42 -0.39 -3.67 16 14 C 0.24 4.72 6.27 -83.81 -0.53 4.20 16 15 N -0.69 -14.79 5.30 -11.19 -0.06 -14.85 16 16 C 0.54 14.29 7.46 -13.07 -0.10 14.19 16 17 O -0.55 -16.64 12.69 5.17 0.07 -16.57 16 18 C -0.54 -14.04 9.54 -35.68 -0.34 -14.38 16 19 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 20 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 21 N -0.76 -21.28 11.82 55.55 0.66 -20.62 16 22 Si 0.91 18.88 29.56 -169.99 -5.02 13.85 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.15 -3.05 8.62 -39.43 -0.34 -3.39 16 27 C -0.04 -0.64 9.60 -39.22 -0.38 -1.01 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.51 6.42 -51.93 -0.33 0.18 16 38 H 0.07 0.61 6.42 -51.93 -0.33 0.28 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.13 1.92 7.64 -52.49 -0.40 1.52 16 42 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.40 7.10 8.79 -40.82 -0.36 6.74 16 44 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 45 H 0.15 3.38 6.41 -52.48 -0.34 3.04 16 46 H 0.13 2.14 7.60 -52.48 -0.40 1.74 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -33.08 388.19 -7.86 -40.94 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.61 Total: 9.32 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.63 Total: 2.09 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.60 Total: -35.48 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.04 Total: -36.57 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.08 -7.86 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063904173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.001 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds