Wall clock time and date at job start Tue Mar 31 2020 19:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47230 * 2 1 4 4 C 1.52999 * 109.47080 * 239.99975 * 2 1 3 5 5 O 1.42899 * 109.47378 * 119.99633 * 2 1 3 6 6 C 1.42907 * 113.99640 * 60.00084 * 5 2 1 7 7 C 1.53000 * 109.46924 * 180.02562 * 6 5 2 8 8 O 1.45195 * 109.47573 * 64.99650 * 7 6 5 9 9 C 1.34752 * 117.00253 * 179.97438 * 8 7 6 10 10 O 1.21510 * 119.99813 * 0.02562 * 9 8 7 11 11 C 1.47460 * 119.99938 * 180.02562 * 9 8 7 12 12 C 1.39839 * 120.06259 * 180.02562 * 11 9 8 13 13 C 1.37614 * 119.92694 * 180.29959 * 12 11 9 14 14 C 1.39272 * 120.06806 * 359.44512 * 13 12 11 15 15 N 1.39071 * 119.93249 * 180.25894 * 14 13 12 16 16 C 1.34771 * 119.99977 * 213.94198 * 15 14 13 17 17 O 1.21726 * 120.00405 * 5.27935 * 16 15 14 18 18 C 1.46202 * 120.00170 * 185.27935 * 16 15 14 19 19 H 1.07998 * 119.99946 * 359.97438 * 18 16 15 20 20 C 1.40121 * 120.00108 * 179.97438 * 18 16 15 21 21 N 1.30640 * 120.00103 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00046 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.47148 * 59.99808 * 22 20 18 24 24 H 1.48499 * 109.47211 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47203 * 300.00119 * 22 20 18 26 26 C 1.39269 * 120.13235 * 0.55252 * 14 13 12 27 27 C 1.37607 * 120.07078 * 359.73074 * 26 14 13 28 28 H 1.09006 * 109.46991 * 300.00137 * 1 2 3 29 29 H 1.08999 * 109.47163 * 59.99721 * 1 2 3 30 30 H 1.08997 * 109.47020 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47090 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46594 * 300.00110 * 3 2 1 33 33 H 1.08997 * 109.47344 * 59.99765 * 3 2 1 34 34 H 1.08997 * 109.46965 * 299.99753 * 4 2 1 35 35 H 1.08993 * 109.47263 * 60.00264 * 4 2 1 36 36 H 1.09004 * 109.47354 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47107 * 59.99949 * 6 5 2 38 38 H 1.08998 * 109.47015 * 299.99981 * 6 5 2 39 39 H 1.09004 * 109.47029 * 304.99792 * 7 6 5 40 40 H 1.09002 * 109.46941 * 185.00095 * 7 6 5 41 41 H 1.07993 * 120.04073 * 0.02610 * 12 11 9 42 42 H 1.08001 * 119.96523 * 179.70162 * 13 12 11 43 43 H 0.97001 * 119.99876 * 33.94416 * 15 14 13 44 44 H 0.96998 * 119.99977 * 180.02562 * 21 20 18 45 45 H 1.08003 * 119.96184 * 179.69770 * 26 14 13 46 46 H 1.08004 * 120.03417 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0063 -0.6735 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1495 -2.6536 2.5451 8 8 1.5717 -1.9887 3.6993 9 6 1.9669 -2.4178 4.9140 10 8 2.7728 -3.3225 5.0061 11 6 1.4214 -1.7894 6.1314 12 6 1.8311 -2.2333 7.3926 13 6 1.3155 -1.6491 8.5269 14 6 0.3955 -0.6090 8.4196 15 7 -0.1196 -0.0170 9.5677 16 6 -1.3891 0.4353 9.5812 17 8 -2.1149 0.2403 8.6236 18 6 -1.8946 1.1602 10.7459 19 1 -1.2508 1.3328 11.5957 20 6 -3.2143 1.6309 10.7596 21 7 -3.9929 1.4225 9.7315 22 14 -3.8603 2.5565 12.2481 23 1 -3.0420 3.7764 12.4660 24 1 -5.2744 2.9449 12.0140 25 1 -3.7780 1.6846 13.4473 26 6 -0.0143 -0.1648 7.1649 27 6 0.4932 -0.7489 6.0270 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.9491 -2.5915 0.4008 38 1 0.4958 -2.0777 1.2908 39 1 3.2327 -2.5318 2.5602 40 1 1.9028 -3.7149 2.5757 41 1 2.5479 -3.0367 7.4764 42 1 1.6279 -1.9947 9.5013 43 1 0.4348 0.0704 10.3589 44 1 -4.9063 1.7487 9.7409 45 1 -0.7316 0.6387 7.0849 46 1 0.1746 -0.4042 5.0542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063904173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:04 Heat of formation + Delta-G solvation = -174.150423 kcal Electronic energy + Delta-G solvation = -27984.006443 eV Core-core repulsion = 23837.708229 eV Total energy + Delta-G solvation = -4146.298214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64591 -40.73721 -39.97648 -38.71394 -37.48734 -35.42882 -34.61676 -34.53864 -32.04028 -31.54340 -30.62907 -28.49438 -28.29635 -28.24005 -25.37926 -23.79693 -23.65364 -22.45296 -21.42969 -20.95327 -19.57387 -19.03529 -18.27572 -17.84285 -17.78466 -17.53103 -17.08908 -16.32712 -16.16101 -16.01814 -15.69354 -15.37846 -15.00136 -14.82373 -14.71356 -14.54159 -14.35201 -14.16764 -13.95518 -13.57418 -13.41720 -13.33578 -13.12654 -12.94935 -12.84338 -12.76685 -12.73510 -12.65302 -12.50292 -12.21968 -12.13899 -12.07819 -11.79205 -11.62391 -11.34523 -11.16180 -10.89777 -10.48989 -10.12724 -9.84966 -8.95358 -8.39048 -6.97177 -0.27462 0.44652 1.40034 1.41258 1.51881 1.56038 1.63496 2.20145 2.35622 2.62965 2.78026 2.88224 3.53761 3.65389 3.80955 3.89057 3.92992 3.99417 4.01268 4.06865 4.12211 4.31185 4.35324 4.36527 4.47314 4.58665 4.64869 4.66325 4.71521 4.82211 4.87814 4.94479 4.96885 5.02100 5.15347 5.16960 5.24251 5.33060 5.34465 5.36447 5.38298 5.38822 5.67001 5.77049 6.12308 6.24249 6.31453 6.70867 6.75894 7.25416 8.29367 8.53780 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.002267 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.201866 B =12347.523391 C =13918.639838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.097 3.903 3 C -0.139 4.139 4 C -0.174 4.174 5 O -0.397 6.397 6 C 0.059 3.941 7 C 0.063 3.937 8 O -0.353 6.353 9 C 0.523 3.477 10 O -0.538 6.538 11 C -0.186 4.186 12 C -0.022 4.022 13 C -0.175 4.175 14 C 0.208 3.792 15 N -0.687 5.687 16 C 0.527 3.473 17 O -0.602 6.602 18 C -0.561 4.561 19 H 0.096 0.904 20 C 0.030 3.970 21 N -0.811 5.811 22 Si 1.001 2.999 23 H -0.254 1.254 24 H -0.275 1.275 25 H -0.253 1.253 26 C -0.169 4.169 27 C -0.031 4.031 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.413 0.587 44 H 0.279 0.721 45 H 0.109 0.891 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.752 -4.150 -16.367 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.058 3.942 3 C -0.196 4.196 4 C -0.231 4.231 5 O -0.317 6.317 6 C -0.017 4.017 7 C -0.010 4.010 8 O -0.269 6.269 9 C 0.371 3.629 10 O -0.430 6.430 11 C -0.189 4.189 12 C -0.041 4.041 13 C -0.196 4.196 14 C 0.108 3.892 15 N -0.330 5.330 16 C 0.334 3.666 17 O -0.487 6.487 18 C -0.597 4.597 19 H 0.114 0.886 20 C -0.187 4.187 21 N -0.439 5.439 22 Si 0.820 3.180 23 H -0.178 1.178 24 H -0.200 1.200 25 H -0.177 1.177 26 C -0.190 4.190 27 C -0.050 4.050 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.250 0.750 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.350 -4.369 -16.950 20.862 hybrid contribution -0.446 0.294 0.666 0.854 sum 10.903 -4.075 -16.284 20.016 Atomic orbital electron populations 1.22439 0.95336 1.02863 1.02982 1.21730 0.93588 0.93554 0.85300 1.21798 1.01747 0.93234 1.02847 1.22402 1.02059 1.01272 0.97406 1.88027 1.74683 1.24344 1.44686 1.22700 1.00001 0.83804 0.95200 1.23368 0.99011 0.96982 0.81635 1.86624 1.65053 1.60393 1.14835 1.21065 0.78092 0.79840 0.83906 1.90768 1.33970 1.30283 1.87983 1.19013 1.05515 1.03103 0.91223 1.21132 0.96248 0.97234 0.89454 1.21077 1.01803 0.96292 1.00441 1.18507 0.92056 0.90925 0.87681 1.43799 1.14664 1.61012 1.13564 1.18775 0.79371 0.79384 0.89048 1.90617 1.57373 1.61611 1.39097 1.21398 0.98907 1.36706 1.02665 0.88579 1.27005 0.96379 0.95165 1.00168 1.70129 1.07228 1.35604 1.30965 0.85013 0.77390 0.78785 0.76848 1.17750 1.19999 1.17674 1.21113 1.02905 1.03024 0.91971 1.21235 0.92507 0.92757 0.98519 0.93252 0.89879 0.91751 0.92061 0.89156 0.93184 0.91476 0.89956 0.91853 0.88028 0.91578 0.90669 0.88259 0.82718 0.82179 0.75037 0.91138 0.87343 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.25 71.98 0.59 -2.24 16 2 C 0.10 1.61 1.14 -10.79 -0.01 1.60 16 3 C -0.14 -2.21 8.84 71.98 0.64 -1.57 16 4 C -0.17 -1.99 8.25 71.98 0.59 -1.40 16 5 O -0.40 -8.86 9.96 -145.57 -1.45 -10.31 16 6 C 0.06 1.05 5.53 71.98 0.40 1.45 16 7 C 0.06 1.39 5.85 71.98 0.42 1.81 16 8 O -0.35 -10.38 9.43 -53.97 -0.51 -10.89 16 9 C 0.52 16.92 7.89 70.25 0.55 17.47 16 10 O -0.54 -18.33 16.13 19.80 0.32 -18.01 16 11 C -0.19 -6.28 5.88 -20.07 -0.12 -6.40 16 12 C -0.02 -0.67 9.58 22.51 0.22 -0.46 16 13 C -0.18 -5.59 9.94 22.37 0.22 -5.37 16 14 C 0.21 8.44 6.27 38.49 0.24 8.68 16 15 N -0.69 -29.74 5.30 -307.51 -1.63 -31.37 16 16 C 0.53 28.96 7.46 86.31 0.64 29.60 16 17 O -0.60 -38.10 12.69 -4.43 -0.06 -38.16 16 18 C -0.56 -29.83 9.54 24.80 0.24 -29.59 16 19 H 0.10 4.47 7.85 -2.91 -0.02 4.45 16 20 C 0.03 1.56 5.50 85.33 0.47 2.03 16 21 N -0.81 -47.27 11.82 21.85 0.26 -47.02 16 22 Si 1.00 38.58 29.56 68.60 2.03 40.61 16 23 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 24 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 26 C -0.17 -7.29 8.62 22.37 0.19 -7.10 16 27 C -0.03 -1.15 9.60 22.51 0.22 -0.93 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.94 6.54 -2.39 -0.02 0.92 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.65 6.54 -2.39 -0.02 0.64 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.19 6.42 -2.39 -0.02 1.18 16 38 H 0.07 1.16 6.42 -2.39 -0.02 1.14 16 39 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.16 4.05 7.64 -2.91 -0.02 4.03 16 42 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.41 14.60 8.79 -92.71 -0.82 13.79 16 44 H 0.28 14.74 8.29 -92.71 -0.77 13.97 16 45 H 0.11 5.49 6.41 -2.91 -0.02 5.47 16 46 H 0.14 4.74 7.60 -2.91 -0.02 4.72 16 Total: -1.00 -74.79 388.19 4.66 -70.13 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.19 Total: 37.42 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.51 Total: 7.59 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -1.37 Total: -78.39 kcal Atomic # 8 Polarization: -75.68 SS G_CDS: -1.70 Total: -77.37 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -74.79 4.66 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063904173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.018 kcal (2) G-P(sol) polarization free energy of solvation -74.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds