Wall clock time and date at job start Tue Mar 31 2020 19:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46740 * 2 1 4 4 C 1.52998 * 109.47037 * 240.00161 * 2 1 3 5 5 O 1.45196 * 109.46770 * 119.99920 * 2 1 3 6 6 C 1.34231 * 117.00588 * 60.00487 * 5 2 1 7 7 O 1.20822 * 119.99499 * 359.97438 * 6 5 2 8 8 C 1.50694 * 120.00318 * 179.97438 * 6 5 2 9 9 N 1.46500 * 109.47193 * 179.97438 * 8 6 5 10 10 C 1.34774 * 120.00119 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08997 * 109.47200 * 299.99661 * 1 2 3 29 29 H 1.08996 * 109.46989 * 60.00554 * 1 2 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47311 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47522 * 299.99735 * 3 2 1 33 33 H 1.09003 * 109.47604 * 59.99944 * 3 2 1 34 34 H 1.09007 * 109.46909 * 299.99625 * 4 2 1 35 35 H 1.08999 * 109.47162 * 59.99467 * 4 2 1 36 36 H 1.08997 * 109.47188 * 180.02562 * 4 2 1 37 37 H 1.09008 * 109.46632 * 60.00024 * 8 6 5 38 38 H 1.08998 * 109.47582 * 300.00259 * 8 6 5 39 39 H 0.97001 * 119.99420 * 0.02562 * 9 8 6 40 40 H 1.09002 * 109.46571 * 59.99894 * 12 10 9 41 41 H 1.08992 * 109.46782 * 300.00158 * 12 10 9 42 42 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 45 45 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5083 8 6 2.1183 -2.7437 2.5437 9 7 1.5940 -4.1100 2.4776 10 6 1.8820 -4.9904 3.4566 11 8 2.5748 -4.6514 4.3926 12 6 1.3431 -6.3961 3.3884 13 6 1.8068 -7.1710 4.5949 14 6 2.9980 -7.8727 4.5492 15 6 3.4267 -8.5854 5.6540 16 6 2.6693 -8.5931 6.8090 17 6 1.4704 -7.8944 6.8561 18 8 0.7209 -7.9050 7.9879 19 6 1.1341 -8.7090 8.9882 20 1 2.0678 -9.2446 8.8998 21 6 0.3604 -8.8482 10.1304 22 7 -0.7771 -8.1961 10.2379 23 14 0.9327 -9.9627 11.5160 24 1 1.7584 -9.1809 12.4711 25 1 -0.2484 -10.5195 12.2233 26 1 1.7429 -11.0736 10.9552 27 6 1.0421 -7.1800 5.7445 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.7547 -2.2587 3.4497 38 1 3.2078 -2.7725 2.5592 39 1 1.0396 -4.3810 1.7292 40 1 1.7071 -6.8811 2.4826 41 1 0.2537 -6.3672 3.3724 42 1 3.5945 -7.8640 3.6489 43 1 4.3569 -9.1326 5.6152 44 1 3.0072 -9.1457 7.6733 45 1 -1.3184 -8.2938 11.0368 46 1 0.1119 -6.6325 5.7792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089810641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:14 Heat of formation + Delta-G solvation = -127.117102 kcal Electronic energy + Delta-G solvation = -27712.298712 eV Core-core repulsion = 23568.040015 eV Total energy + Delta-G solvation = -4144.258696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36929 -39.80970 -38.76067 -37.57694 -36.43815 -34.73282 -34.38717 -32.37981 -31.99185 -29.38032 -28.77733 -27.86861 -27.85169 -26.60231 -25.16686 -22.75382 -21.61853 -21.13294 -20.44291 -19.98012 -18.06906 -17.54376 -17.20447 -16.86660 -16.80618 -16.33605 -15.85072 -15.51650 -15.01101 -14.80739 -14.38280 -14.33258 -14.23811 -14.06875 -13.60033 -13.52933 -13.30007 -13.15690 -12.95339 -12.61842 -12.51257 -12.44148 -12.37932 -12.35975 -11.89322 -11.77159 -11.66121 -11.48503 -11.23090 -10.86248 -10.79074 -10.74398 -10.57017 -10.46583 -10.40471 -9.86497 -9.33678 -9.28208 -8.78467 -8.01671 -7.16095 -6.38852 -3.97741 1.72222 1.93202 2.21554 2.45320 2.69859 3.15508 3.17276 3.21628 3.22515 4.01515 4.08863 4.24166 4.28084 4.43131 4.58184 4.89210 4.94683 5.02447 5.03727 5.08067 5.15842 5.18457 5.22764 5.24300 5.31683 5.36721 5.37113 5.54420 5.55757 5.71049 5.78518 5.80480 5.81095 5.98841 6.01593 6.15166 6.23212 6.39579 6.71209 6.97420 7.12926 7.28497 7.31904 7.37376 7.42783 7.49866 7.88487 8.06312 8.21494 9.06969 9.78243 10.79471 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.001839 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.357289 B =15218.825283 C =15848.119225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.346 6.346 6 C 0.465 3.535 7 O -0.501 6.501 8 C 0.126 3.874 9 N -0.733 5.733 10 C 0.519 3.481 11 O -0.515 6.515 12 C -0.091 4.091 13 C -0.035 4.035 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.174 4.174 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.410 0.590 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 14.472 -22.619 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.262 6.262 6 C 0.308 3.692 7 O -0.389 6.389 8 C 0.001 3.999 9 N -0.392 5.392 10 C 0.306 3.694 11 O -0.388 6.388 12 C -0.130 4.130 13 C -0.035 4.035 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.249 4.249 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.193 4.193 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.247 0.753 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.450 14.751 -21.957 26.823 hybrid contribution 0.029 -0.554 0.215 0.595 sum 4.479 14.197 -21.741 26.350 Atomic orbital electron populations 1.22505 0.93746 1.04873 1.02992 1.22267 0.94593 0.92354 0.82689 1.21864 1.02369 0.92371 1.03262 1.22499 1.01806 1.03142 0.96608 1.86540 1.69574 1.24674 1.45433 1.23479 0.77336 0.81156 0.87244 1.90576 1.35329 1.69880 1.43137 1.20617 1.01532 0.83183 0.94616 1.45847 1.55679 1.10176 1.27475 1.20818 0.80318 0.87047 0.81213 1.90782 1.36699 1.78855 1.32490 1.20561 1.02551 0.90887 0.99034 1.18644 0.94985 0.96917 0.92975 1.20354 0.97714 1.04457 0.98959 1.20677 0.98115 0.97690 0.92855 1.21176 0.97230 1.06966 0.99553 1.19278 0.90294 0.92976 0.87371 1.83976 1.46998 1.57786 1.19597 1.21314 1.06825 1.23983 0.94535 0.89128 1.25273 0.95271 0.97894 0.98144 1.70039 1.11738 1.39902 1.28300 0.85721 0.78248 0.79458 0.80037 1.19935 1.20316 1.19230 1.19952 1.01936 1.05674 0.91736 0.91792 0.90883 0.89731 0.91324 0.90204 0.91269 0.89758 0.90883 0.91867 0.87072 0.87176 0.75254 0.88114 0.87964 0.87898 0.87473 0.85624 0.92123 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.37 37.16 0.31 -0.99 16 2 C 0.12 0.84 1.13 -90.62 -0.10 0.74 16 3 C -0.14 -0.73 8.85 37.15 0.33 -0.40 16 4 C -0.18 -1.24 8.37 37.16 0.31 -0.93 16 5 O -0.35 -3.05 9.89 -39.26 -0.39 -3.44 16 6 C 0.46 4.31 7.34 36.00 0.26 4.58 16 7 O -0.50 -5.19 11.17 -18.75 -0.21 -5.40 16 8 C 0.13 1.19 6.27 -5.20 -0.03 1.16 16 9 N -0.73 -7.76 5.53 -61.47 -0.34 -8.10 16 10 C 0.52 7.34 7.82 -10.98 -0.09 7.26 16 11 O -0.51 -9.64 16.03 5.56 0.09 -9.55 16 12 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 13 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 14 C -0.20 -3.54 9.70 -39.53 -0.38 -3.93 16 15 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 16 C -0.23 -5.23 9.17 -39.40 -0.36 -5.59 16 17 C 0.15 3.88 6.65 -39.11 -0.26 3.62 16 18 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 19 C -0.39 -11.18 9.49 30.89 0.29 -10.89 16 20 H 0.09 2.41 5.21 -52.49 -0.27 2.13 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 23 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 C -0.17 -3.82 9.65 -39.39 -0.38 -4.20 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.75 5.89 -51.92 -0.31 0.44 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.72 5.89 -51.92 -0.31 0.41 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.41 3.67 7.44 -40.82 -0.30 3.36 16 40 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 41 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 42 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -34.93 387.44 -7.02 -41.95 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.53 Total: 6.03 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.22 Total: -12.90 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.42 Total: -33.18 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.51 Total: -23.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.93 -7.02 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089810641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.163 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds