Wall clock time and date at job start Tue Mar 31 2020 19:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46740 * 2 1 4 4 C 1.52998 * 109.47037 * 240.00161 * 2 1 3 5 5 O 1.45196 * 109.46770 * 119.99920 * 2 1 3 6 6 C 1.34231 * 117.00588 * 60.00487 * 5 2 1 7 7 O 1.20822 * 119.99499 * 359.97438 * 6 5 2 8 8 C 1.50694 * 120.00318 * 179.97438 * 6 5 2 9 9 N 1.46500 * 109.47193 * 179.97438 * 8 6 5 10 10 C 1.34774 * 120.00119 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08997 * 109.47200 * 299.99661 * 1 2 3 29 29 H 1.08996 * 109.46989 * 60.00554 * 1 2 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47311 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47522 * 299.99735 * 3 2 1 33 33 H 1.09003 * 109.47604 * 59.99944 * 3 2 1 34 34 H 1.09007 * 109.46909 * 299.99625 * 4 2 1 35 35 H 1.08999 * 109.47162 * 59.99467 * 4 2 1 36 36 H 1.08997 * 109.47188 * 180.02562 * 4 2 1 37 37 H 1.09008 * 109.46632 * 60.00024 * 8 6 5 38 38 H 1.08998 * 109.47582 * 300.00259 * 8 6 5 39 39 H 0.97001 * 119.99420 * 0.02562 * 9 8 6 40 40 H 1.09002 * 109.46571 * 59.99894 * 12 10 9 41 41 H 1.08992 * 109.46782 * 300.00158 * 12 10 9 42 42 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 45 45 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5083 8 6 2.1183 -2.7437 2.5437 9 7 1.5940 -4.1100 2.4776 10 6 1.8820 -4.9904 3.4566 11 8 2.5748 -4.6514 4.3926 12 6 1.3431 -6.3961 3.3884 13 6 1.8068 -7.1710 4.5949 14 6 2.9980 -7.8727 4.5492 15 6 3.4267 -8.5854 5.6540 16 6 2.6693 -8.5931 6.8090 17 6 1.4704 -7.8944 6.8561 18 8 0.7209 -7.9050 7.9879 19 6 1.1341 -8.7090 8.9882 20 1 2.0678 -9.2446 8.8998 21 6 0.3604 -8.8482 10.1304 22 7 -0.7771 -8.1961 10.2379 23 14 0.9327 -9.9627 11.5160 24 1 1.7584 -9.1809 12.4711 25 1 -0.2484 -10.5195 12.2233 26 1 1.7429 -11.0736 10.9552 27 6 1.0421 -7.1800 5.7445 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.7547 -2.2587 3.4497 38 1 3.2078 -2.7725 2.5592 39 1 1.0396 -4.3810 1.7292 40 1 1.7071 -6.8811 2.4826 41 1 0.2537 -6.3672 3.3724 42 1 3.5945 -7.8640 3.6489 43 1 4.3569 -9.1326 5.6152 44 1 3.0072 -9.1457 7.6733 45 1 -1.3184 -8.2938 11.0368 46 1 0.1119 -6.6325 5.7792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089810641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:13 Heat of formation + Delta-G solvation = -150.108001 kcal Electronic energy + Delta-G solvation = -27713.295672 eV Core-core repulsion = 23568.040015 eV Total energy + Delta-G solvation = -4145.255657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08999 -41.09349 -40.36365 -38.41529 -38.07098 -35.64027 -35.08415 -34.33177 -33.49419 -30.94787 -29.99088 -28.38565 -28.31287 -27.92344 -27.14050 -23.62956 -23.20320 -22.56888 -21.57655 -20.74453 -19.55584 -18.97137 -18.56974 -17.86264 -17.56737 -17.30916 -16.81640 -16.73411 -16.56050 -16.08070 -16.00686 -15.51498 -15.39639 -15.08739 -14.94800 -14.61743 -14.38181 -14.28652 -14.09994 -13.96918 -13.57085 -13.41803 -13.09825 -12.97438 -12.95940 -12.90022 -12.77714 -12.46806 -12.46099 -12.38253 -12.22323 -12.20431 -12.09409 -11.45186 -11.19243 -11.14721 -11.08940 -10.78933 -10.31296 -9.62782 -8.96121 -8.45804 -6.14205 0.51933 0.77621 0.99062 1.29957 1.34733 1.44782 1.52726 1.59879 2.18559 2.28062 2.86246 3.19050 3.41581 3.45803 3.71774 3.76845 3.79954 3.93241 4.07169 4.12573 4.18758 4.34167 4.35653 4.45449 4.55660 4.60318 4.60410 4.66373 4.75907 4.76188 4.77669 4.86065 4.86927 5.08167 5.12126 5.14319 5.19701 5.25141 5.26163 5.32899 5.43850 5.66934 5.74692 5.77194 6.04229 6.24542 6.42057 6.60821 6.98773 7.17376 7.80738 8.77749 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.001839 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.357289 B =15218.825283 C =15848.119225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.106 3.894 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.352 6.352 6 C 0.471 3.529 7 O -0.512 6.512 8 C 0.123 3.877 9 N -0.715 5.715 10 C 0.523 3.477 11 O -0.568 6.568 12 C -0.089 4.089 13 C -0.027 4.027 14 C -0.179 4.179 15 C -0.074 4.074 16 C -0.246 4.246 17 C 0.110 3.890 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.252 1.252 27 C -0.192 4.192 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.421 0.579 40 H 0.146 0.854 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.117 0.883 45 H 0.272 0.728 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 14.532 -25.518 30.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.071 3.929 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.268 6.268 6 C 0.314 3.686 7 O -0.401 6.401 8 C -0.001 4.001 9 N -0.373 5.373 10 C 0.311 3.689 11 O -0.446 6.446 12 C -0.129 4.129 13 C -0.028 4.028 14 C -0.197 4.197 15 C -0.092 4.092 16 C -0.265 4.265 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.176 1.176 27 C -0.211 4.211 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.260 0.740 40 H 0.164 0.836 41 H 0.140 0.860 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.135 0.865 45 H 0.081 0.919 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.274 14.831 -24.953 29.699 hybrid contribution -0.434 -0.433 0.739 0.960 sum 5.840 14.398 -24.215 28.771 Atomic orbital electron populations 1.22482 0.93757 1.03810 1.03832 1.22575 0.94747 0.93342 0.82222 1.21895 1.02510 0.90969 1.04208 1.22466 1.01906 1.02184 0.97138 1.86536 1.69582 1.24311 1.46392 1.23315 0.77042 0.81362 0.86848 1.90582 1.35825 1.70175 1.43518 1.20679 1.02054 0.82559 0.94850 1.45637 1.54749 1.10184 1.26737 1.20867 0.79551 0.87603 0.80867 1.90779 1.39431 1.79811 1.34588 1.20678 1.03980 0.89996 0.98203 1.19163 0.94294 0.96079 0.93217 1.20991 0.97153 1.01676 0.99897 1.21136 0.98852 0.97490 0.91714 1.21301 0.97105 1.07160 1.00953 1.19888 0.91512 0.95089 0.87461 1.83935 1.49145 1.59814 1.21283 1.21822 1.07540 1.24418 0.95163 0.88223 1.26615 0.95238 0.99530 1.00850 1.70189 1.13660 1.42604 1.29601 0.84572 0.78128 0.77397 0.75990 1.18940 1.19438 1.17582 1.20232 1.02664 1.05704 0.92515 0.91982 0.89064 0.91647 0.91132 0.88202 0.91401 0.91583 0.89120 0.91642 0.87205 0.86317 0.73975 0.83634 0.85953 0.83347 0.83672 0.86487 0.91889 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 8.37 71.98 0.60 -1.71 16 2 C 0.11 1.35 1.13 -10.79 -0.01 1.34 16 3 C -0.14 -1.13 8.85 71.98 0.64 -0.49 16 4 C -0.18 -2.10 8.37 71.98 0.60 -1.50 16 5 O -0.35 -5.78 9.89 -51.43 -0.51 -6.29 16 6 C 0.47 8.14 7.34 71.23 0.52 8.67 16 7 O -0.51 -9.92 11.17 21.98 0.25 -9.68 16 8 C 0.12 2.18 6.27 85.63 0.54 2.72 16 9 N -0.72 -13.57 5.53 -466.79 -2.58 -16.15 16 10 C 0.52 13.64 7.82 87.66 0.69 14.32 16 11 O -0.57 -20.73 16.03 -3.04 -0.05 -20.78 16 12 C -0.09 -2.06 5.83 29.10 0.17 -1.89 16 13 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 14 C -0.18 -5.80 9.70 22.30 0.22 -5.59 16 15 C -0.07 -2.68 10.04 22.25 0.22 -2.46 16 16 C -0.25 -11.36 9.17 22.39 0.21 -11.16 16 17 C 0.11 5.83 6.65 22.58 0.15 5.98 16 18 O -0.23 -14.81 9.76 -22.74 -0.22 -15.03 16 19 C -0.41 -25.03 9.49 67.92 0.64 -24.38 16 20 H 0.10 5.56 5.21 -2.91 -0.02 5.54 16 21 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 22 N -0.92 -58.20 13.67 21.61 0.30 -57.90 16 23 Si 1.02 44.19 29.55 68.60 2.03 46.21 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 27 C -0.19 -8.65 9.65 22.39 0.22 -8.44 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.10 5.89 -2.38 -0.01 1.09 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.04 5.89 -2.38 -0.01 1.02 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.42 6.36 7.44 -92.71 -0.69 5.67 16 40 H 0.15 2.11 8.09 -2.39 -0.02 2.09 16 41 H 0.12 2.40 8.08 -2.39 -0.02 2.38 16 42 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 46 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -82.65 387.44 5.31 -77.35 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.32 Total: 28.88 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 5.78 Total: -26.62 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -2.28 Total: -74.05 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.53 Total: -51.77 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -82.65 5.31 -77.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089810641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.760 kcal (2) G-P(sol) polarization free energy of solvation -82.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds