Wall clock time and date at job start Tue Mar 31 2020 18:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99784 * 2 1 4 4 O 1.20822 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99937 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46822 * 59.99981 * 5 3 2 7 7 C 1.52996 * 109.46880 * 300.00278 * 5 3 2 8 8 C 1.52996 * 109.47144 * 179.97438 * 5 3 2 9 9 N 1.46500 * 109.47128 * 179.97438 * 8 5 3 10 10 C 1.34774 * 120.00119 * 180.02562 * 9 8 5 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08998 * 109.46601 * 299.99987 * 1 2 3 29 29 H 1.08998 * 109.47143 * 59.99886 * 1 2 3 30 30 H 1.08996 * 109.46588 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47104 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47146 * 300.00016 * 6 5 3 33 33 H 1.08998 * 109.47660 * 60.00280 * 6 5 3 34 34 H 1.09002 * 109.47231 * 299.99244 * 7 5 3 35 35 H 1.09001 * 109.47460 * 59.99756 * 7 5 3 36 36 H 1.08998 * 109.47132 * 180.02562 * 7 5 3 37 37 H 1.09008 * 109.46644 * 60.00215 * 8 5 3 38 38 H 1.08998 * 109.47635 * 300.00411 * 8 5 3 39 39 H 0.97001 * 119.99420 * 0.02562 * 9 8 5 40 40 H 1.09002 * 109.46571 * 59.99894 * 12 10 9 41 41 H 1.08992 * 109.46782 * 300.00158 * 12 10 9 42 42 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 45 45 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1139 0.5811 -1.2483 7 6 4.1129 0.5816 1.2501 8 6 4.0002 2.7421 -0.0002 9 7 5.4632 2.8188 0.0010 10 6 6.0750 4.0197 0.0011 11 8 5.4145 5.0369 0.0007 12 6 7.5800 4.0986 0.0017 13 6 8.0072 5.5437 0.0024 14 6 8.2040 6.2065 -1.1957 15 6 8.5966 7.5324 -1.1993 16 6 8.7871 8.2009 -0.0058 17 6 8.5959 7.5368 1.1985 18 8 8.7882 8.1895 2.3732 19 6 9.2802 9.4428 2.3037 20 1 9.4260 9.9132 1.3425 21 6 9.5990 10.1279 3.4663 22 7 9.4220 9.5548 4.6371 23 14 10.2814 11.8642 3.3699 24 1 9.2972 12.7459 2.6924 25 1 10.5393 12.3716 4.7414 26 1 11.5507 11.8552 2.5991 27 6 8.2022 6.2047 1.1988 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 5.2025 0.6378 -1.2477 32 1 3.8048 -0.4642 -1.2482 33 1 3.7246 1.0750 -2.1386 34 1 3.7229 1.0759 2.1399 35 1 3.8038 -0.4637 1.2502 36 1 5.2014 0.6390 1.2508 37 1 3.6100 3.2367 0.8894 38 1 3.6108 3.2357 -0.8906 39 1 5.9914 2.0053 0.0017 40 1 7.9700 3.6043 -0.8880 41 1 7.9693 3.6046 0.8919 42 1 8.0507 5.6873 -2.1303 43 1 8.7498 8.0470 -2.1363 44 1 9.0887 9.2379 -0.0093 45 1 9.6454 10.0340 5.4503 46 1 8.0491 5.6865 2.1339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089825171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:22 Heat of formation + Delta-G solvation = -156.408871 kcal Electronic energy + Delta-G solvation = -28023.253874 eV Core-core repulsion = 23877.724992 eV Total energy + Delta-G solvation = -4145.528883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99185 -41.09347 -40.39715 -38.44932 -37.93209 -37.29939 -34.39243 -34.29263 -33.33721 -30.88676 -29.16583 -28.63135 -28.34359 -27.43710 -26.87589 -24.44391 -23.26143 -22.72897 -21.51915 -20.79040 -19.50535 -18.82521 -18.44554 -18.34193 -17.51918 -17.18715 -16.85981 -16.75463 -16.60020 -16.13982 -16.07729 -15.51543 -15.27262 -15.03122 -14.92488 -14.76943 -14.41686 -14.32929 -14.16483 -13.96158 -13.59387 -13.44848 -13.31730 -12.95747 -12.91923 -12.89966 -12.70288 -12.45508 -12.38497 -12.21400 -12.19223 -12.12219 -12.04266 -11.85970 -11.43403 -11.19907 -11.00292 -10.78486 -10.16900 -9.62140 -8.96255 -8.46386 -6.14889 0.53165 0.77589 1.03409 1.33647 1.44646 1.48582 1.50413 1.68209 2.18129 2.30746 2.86359 3.19550 3.25517 3.46037 3.64682 3.67651 3.82060 3.91541 4.12030 4.14835 4.27854 4.28963 4.33898 4.44827 4.51736 4.59390 4.62298 4.68397 4.69010 4.73901 4.75926 4.81739 4.82991 4.89016 5.08955 5.13732 5.17841 5.25366 5.30457 5.32297 5.37493 5.66759 5.74444 5.77111 6.03526 6.25631 6.55361 6.59228 6.97960 7.30866 7.80012 8.76977 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.001995 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.800413 B =14034.360038 C =14632.026522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.472 3.528 4 O -0.542 6.542 5 C -0.057 4.057 6 C -0.140 4.140 7 C -0.143 4.143 8 C 0.143 3.857 9 N -0.708 5.708 10 C 0.514 3.486 11 O -0.580 6.580 12 C -0.088 4.088 13 C -0.027 4.027 14 C -0.180 4.180 15 C -0.076 4.076 16 C -0.248 4.248 17 C 0.109 3.891 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.193 4.193 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.421 0.579 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.116 0.884 45 H 0.272 0.728 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 -26.377 -13.750 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C 0.315 3.685 4 O -0.431 6.431 5 C -0.058 4.058 6 C -0.197 4.197 7 C -0.200 4.200 8 C 0.018 3.982 9 N -0.365 5.365 10 C 0.302 3.698 11 O -0.459 6.459 12 C -0.127 4.127 13 C -0.028 4.028 14 C -0.198 4.198 15 C -0.094 4.094 16 C -0.267 4.267 17 C 0.059 3.941 18 O -0.142 6.142 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.179 1.179 27 C -0.212 4.212 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.261 0.739 40 H 0.168 0.832 41 H 0.145 0.855 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.241 -25.425 -13.304 30.468 hybrid contribution -0.216 1.197 0.591 1.352 sum -10.457 -24.229 -12.713 29.291 Atomic orbital electron populations 1.23583 0.74852 1.05931 1.02339 1.86472 1.24733 1.31939 1.83407 1.23892 0.92230 0.81344 0.71025 1.90719 1.68054 1.37762 1.46598 1.20688 0.86549 0.96192 1.02415 1.21958 1.03303 1.01478 0.92990 1.21968 1.03259 1.01580 0.93198 1.20914 0.81077 0.94414 1.01759 1.45686 1.06213 1.08637 1.75920 1.21043 0.91119 0.82854 0.74809 1.90785 1.68114 1.36844 1.50146 1.20715 0.90189 0.93357 1.08449 1.19233 0.96236 0.95670 0.91647 1.21004 1.06015 0.95021 0.97776 1.21140 0.96409 0.95013 0.96797 1.21294 1.11356 1.01209 0.92842 1.19912 0.94708 0.92854 0.86596 1.83933 1.74325 1.28781 1.27137 1.21779 1.43216 0.88549 0.95520 0.88313 1.26621 0.97174 1.05003 0.93438 1.70182 1.47470 1.40031 0.98349 0.84637 0.79038 0.74083 0.78356 1.18450 1.19448 1.17912 1.20253 1.09862 0.92190 0.98899 0.92412 0.92134 0.84480 0.88296 0.89026 0.92454 0.93075 0.88877 0.88450 0.93491 0.92535 0.73917 0.83186 0.85517 0.83301 0.83777 0.86571 0.91864 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.03 10.37 -51.40 -0.53 -5.56 16 3 C 0.47 8.93 6.55 71.24 0.47 9.39 16 4 O -0.54 -14.88 15.73 21.98 0.35 -14.54 16 5 C -0.06 -0.76 0.72 -52.93 -0.04 -0.80 16 6 C -0.14 -1.01 8.23 71.98 0.59 -0.42 16 7 C -0.14 -1.29 8.23 71.98 0.59 -0.69 16 8 C 0.14 3.01 3.85 86.38 0.33 3.34 16 9 N -0.71 -12.02 4.96 -463.06 -2.30 -14.32 16 10 C 0.51 13.60 7.82 87.66 0.69 14.29 16 11 O -0.58 -23.23 16.03 -3.04 -0.05 -23.28 16 12 C -0.09 -1.91 5.83 29.10 0.17 -1.74 16 13 C -0.03 -0.95 4.37 -19.88 -0.09 -1.03 16 14 C -0.18 -5.92 9.70 22.30 0.22 -5.71 16 15 C -0.08 -2.81 10.04 22.25 0.22 -2.58 16 16 C -0.25 -11.67 9.17 22.39 0.21 -11.46 16 17 C 0.11 5.85 6.65 22.58 0.15 6.00 16 18 O -0.23 -14.97 9.76 -22.74 -0.22 -15.20 16 19 C -0.41 -25.39 9.49 67.92 0.64 -24.75 16 20 H 0.10 5.58 5.21 -2.91 -0.02 5.56 16 21 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 22 N -0.92 -58.61 13.67 21.61 0.30 -58.31 16 23 Si 1.02 44.62 29.55 68.60 2.03 46.65 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 27 C -0.19 -8.78 9.65 22.39 0.22 -8.57 16 28 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 30 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.26 6.86 -2.38 -0.02 0.24 16 32 H 0.09 0.42 8.11 -2.39 -0.02 0.40 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.55 8.11 -2.39 -0.02 0.54 16 36 H 0.10 0.45 6.86 -2.39 -0.02 0.44 16 37 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 38 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.42 3.15 6.16 -92.71 -0.57 2.57 16 40 H 0.15 1.80 8.09 -2.39 -0.02 1.78 16 41 H 0.13 2.17 8.08 -2.39 -0.02 2.15 16 42 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.12 5.53 5.64 -2.91 -0.02 5.52 16 45 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -92.70 390.25 6.03 -86.67 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.43 Total: 22.18 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 6.03 Total: -24.29 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -2.00 Total: -72.63 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -0.46 Total: -58.57 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -92.70 6.03 -86.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089825171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.742 kcal (2) G-P(sol) polarization free energy of solvation -92.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds