Wall clock time and date at job start Tue Mar 31 2020 18:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47298 * 2 1 4 4 C 1.52994 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47187 * 304.99688 * 4 3 2 6 6 N 1.46498 * 109.47353 * 64.99851 * 4 3 2 7 7 C 1.34783 * 120.00022 * 204.99724 * 6 4 3 8 8 O 1.21282 * 120.00033 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99917 * 179.97438 * 7 6 4 10 10 C 1.50698 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.38320 * 119.96576 * 269.72177 * 10 9 7 12 12 C 1.38279 * 120.14055 * 179.76258 * 11 10 9 13 13 C 1.38121 * 120.06625 * 0.51629 * 12 11 10 14 14 C 1.38860 * 119.93148 * 359.74429 * 13 12 11 15 15 O 1.35755 * 120.06973 * 179.97438 * 14 13 12 16 16 C 1.34832 * 116.99667 * 354.48523 * 15 14 13 17 17 H 1.07995 * 120.00554 * 5.06358 * 16 15 14 18 18 C 1.38660 * 119.99633 * 185.05749 * 16 15 14 19 19 N 1.31556 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99886 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47134 * 90.00116 * 20 18 16 22 22 H 1.48501 * 109.47403 * 210.00162 * 20 18 16 23 23 H 1.48501 * 109.47371 * 330.00388 * 20 18 16 24 24 C 1.38085 * 119.96634 * 89.99950 * 10 9 7 25 25 C 1.50700 * 109.47168 * 185.00075 * 4 3 2 26 26 O 1.20826 * 120.00144 * 239.99486 * 25 4 3 27 27 O 1.34228 * 120.00253 * 59.99763 * 25 4 3 28 28 C 1.45195 * 117.00192 * 180.02562 * 27 25 4 29 29 H 1.09007 * 109.46546 * 300.00185 * 1 2 3 30 30 H 1.09005 * 109.46922 * 59.99528 * 1 2 3 31 31 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46711 * 239.99693 * 2 1 3 33 33 H 1.09005 * 109.46922 * 120.00472 * 2 1 3 34 34 H 1.08997 * 109.46967 * 60.00198 * 3 2 1 35 35 H 1.09000 * 109.47076 * 300.00227 * 3 2 1 36 36 H 0.96997 * 119.99933 * 25.00244 * 6 4 3 37 37 H 1.08997 * 109.47091 * 60.00219 * 9 7 6 38 38 H 1.09003 * 109.47227 * 300.00670 * 9 7 6 39 39 H 1.08005 * 119.92876 * 0.02562 * 11 10 9 40 40 H 1.07997 * 119.97151 * 180.25535 * 12 11 10 41 41 H 1.08005 * 120.03714 * 179.71820 * 13 12 11 42 42 H 0.97001 * 120.00070 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03129 * 359.95667 * 24 10 9 44 44 H 1.09001 * 109.47181 * 299.99939 * 28 27 25 45 45 H 1.08997 * 109.47237 * 60.00356 * 28 27 25 46 46 H 1.09001 * 109.47173 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 7 4.0579 0.8588 -1.2527 7 6 5.2799 0.2922 -1.3010 8 8 5.9755 0.2651 -0.3079 9 6 5.7814 -0.3086 -2.5888 10 6 7.1628 -0.8720 -2.3758 11 6 8.2740 -0.0766 -2.5900 12 6 9.5430 -0.5884 -2.3909 13 6 9.7050 -1.8995 -1.9875 14 6 8.5917 -2.7021 -1.7768 15 8 8.7476 -3.9912 -1.3808 16 6 10.0087 -4.4647 -1.3205 17 1 10.8431 -3.8034 -1.5015 18 6 10.2342 -5.8007 -1.0258 19 7 9.2178 -6.6062 -0.8047 20 14 11.9812 -6.4565 -0.9415 21 1 12.4944 -6.3209 0.4455 22 1 11.9921 -7.8882 -1.3356 23 1 12.8460 -5.6817 -1.8672 24 6 7.3181 -2.1835 -1.9725 25 6 4.0725 2.8577 0.1232 26 8 4.7669 3.3305 -0.7453 27 8 3.7487 3.5932 1.1983 28 6 4.2675 4.9483 1.2505 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.5015 0.8802 -2.0469 37 1 5.8177 0.4616 -3.3592 38 1 5.1086 -1.1062 -2.9039 39 1 8.1500 0.9477 -2.9094 40 1 10.4086 0.0363 -2.5550 41 1 10.6966 -2.3001 -1.8366 42 1 9.3756 -7.5407 -0.5983 43 1 6.4503 -2.8051 -1.8090 44 1 5.3570 4.9213 1.2315 45 1 3.9029 5.5103 0.3907 46 1 3.9316 5.4309 2.1684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091143075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:20 Heat of formation + Delta-G solvation = -134.429885 kcal Electronic energy + Delta-G solvation = -28387.088234 eV Core-core repulsion = 24242.512432 eV Total energy + Delta-G solvation = -4144.575802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98889 -39.66145 -38.74628 -36.99100 -36.43884 -36.17490 -33.62275 -32.35894 -31.97881 -30.24916 -29.09018 -27.89114 -26.90982 -25.22914 -24.84485 -21.91877 -21.66981 -21.46433 -20.78018 -20.25773 -17.96973 -17.66649 -17.25841 -17.08731 -16.82348 -16.45382 -16.00100 -15.29585 -15.02873 -14.85722 -14.33379 -14.29808 -14.16479 -13.84499 -13.70956 -13.43385 -13.34285 -13.32252 -12.83440 -12.57983 -12.48765 -12.34011 -12.14650 -11.79558 -11.66450 -11.53503 -11.48083 -11.21682 -11.07632 -11.01776 -10.77387 -10.72544 -10.72098 -10.54778 -10.39849 -9.81233 -9.35649 -9.26944 -8.77445 -7.99516 -7.14243 -6.38138 -3.96905 1.98195 2.09439 2.28171 2.47253 2.85261 3.13712 3.17757 3.19176 3.22675 4.02283 4.16386 4.43046 4.55475 4.59463 4.77560 4.84177 4.89915 4.92910 4.99259 5.08992 5.15255 5.18156 5.25089 5.26084 5.36115 5.41707 5.46928 5.55088 5.74096 5.74941 5.80101 5.82271 5.95742 6.02157 6.07434 6.18074 6.25129 6.41129 6.72960 6.99288 7.14542 7.33651 7.34309 7.44960 7.51063 7.51853 7.90395 8.07288 8.24889 9.07862 9.79333 10.80315 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.002427 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.972371 B =11535.287214 C =12486.743539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C 0.158 3.842 5 H 0.128 0.872 6 N -0.718 5.718 7 C 0.522 3.478 8 O -0.513 6.513 9 C -0.091 4.091 10 C -0.034 4.034 11 C -0.194 4.194 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.154 3.846 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.174 4.174 25 C 0.447 3.553 26 O -0.495 6.495 27 O -0.359 6.359 28 C 0.035 3.965 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.405 0.595 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 18.364 -0.068 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C 0.050 3.950 5 H 0.146 0.854 6 N -0.373 5.373 7 C 0.309 3.691 8 O -0.386 6.386 9 C -0.131 4.131 10 C -0.035 4.035 11 C -0.213 4.213 12 C -0.093 4.093 13 C -0.249 4.249 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.466 4.466 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.193 4.193 25 C 0.288 3.712 26 O -0.381 6.381 27 O -0.275 6.275 28 C -0.058 4.058 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.241 0.759 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.416 18.080 0.532 24.426 hybrid contribution 0.885 0.081 -0.335 0.949 sum -15.531 18.161 0.197 23.897 Atomic orbital electron populations 1.21764 0.95297 1.02062 1.01822 1.21547 0.96156 0.95204 1.03356 1.21880 0.90415 0.99242 1.04285 1.20460 0.95613 0.87693 0.91186 0.85413 1.45822 1.19019 1.60081 1.12406 1.20861 0.80127 0.76971 0.91125 1.90765 1.55104 1.56205 1.36533 1.20564 0.96155 1.01396 0.94966 1.18645 0.92345 0.93072 0.99409 1.20377 0.92320 0.98802 1.09846 1.20679 0.96282 0.94697 0.97687 1.21179 0.99210 0.94879 1.09678 1.19268 0.93102 0.85922 0.91600 1.83977 1.30494 1.20600 1.73340 1.21314 0.81398 0.94089 1.49831 0.89162 1.25264 0.99714 0.94874 0.96695 1.70041 1.30429 1.05395 1.44216 0.85727 0.80506 0.78392 0.78883 1.19936 1.20305 1.19243 1.19935 0.95226 0.95264 1.08874 1.24490 0.77995 0.89324 0.79439 1.90673 1.34581 1.72167 1.40652 1.86489 1.69873 1.27132 1.44046 1.23262 1.00042 0.79389 1.03148 0.92605 0.92717 0.92349 0.91213 0.91143 0.88947 0.90743 0.75950 0.88137 0.88018 0.87919 0.87506 0.85630 0.92141 0.86790 0.91812 0.92018 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.13 -0.79 5.82 -26.73 -0.16 -0.95 16 3 C -0.12 -0.77 4.72 -26.74 -0.13 -0.89 16 4 C 0.16 1.59 2.48 -69.09 -0.17 1.42 16 5 H 0.13 1.45 7.58 -51.93 -0.39 1.05 16 6 N -0.72 -7.56 4.06 -54.93 -0.22 -7.78 16 7 C 0.52 7.77 7.65 -10.98 -0.08 7.68 16 8 O -0.51 -10.19 15.70 5.56 0.09 -10.10 16 9 C -0.09 -1.25 5.83 -29.04 -0.17 -1.42 16 10 C -0.03 -0.65 4.37 -104.65 -0.46 -1.10 16 11 C -0.19 -3.72 9.70 -39.54 -0.38 -4.10 16 12 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 13 C -0.23 -5.34 9.17 -39.39 -0.36 -5.71 16 14 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 15 O -0.18 -5.33 9.76 0.03 0.00 -5.33 16 16 C -0.39 -11.26 9.49 30.89 0.29 -10.96 16 17 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 20 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 25 C 0.45 5.44 7.29 36.01 0.26 5.71 16 26 O -0.49 -7.52 16.07 -18.75 -0.30 -7.82 16 27 O -0.36 -3.76 10.37 -39.25 -0.41 -4.17 16 28 C 0.04 0.28 10.56 101.05 1.07 1.35 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.45 7.75 -51.93 -0.40 0.05 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.53 8.00 -51.93 -0.42 0.11 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.41 2.92 8.60 -40.82 -0.35 2.57 16 37 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 44 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 45 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -37.36 395.85 -6.95 -44.31 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.76 Total: 4.97 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.05 Total: -10.92 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.54 Total: -32.95 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.62 Total: -27.43 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.36 -6.95 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091143075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.116 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds