Wall clock time and date at job start Tue Mar 31 2020 18:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47298 * 2 1 4 4 C 1.52994 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47187 * 304.99688 * 4 3 2 6 6 N 1.46498 * 109.47353 * 64.99851 * 4 3 2 7 7 C 1.34783 * 120.00022 * 204.99724 * 6 4 3 8 8 O 1.21282 * 120.00033 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99917 * 179.97438 * 7 6 4 10 10 C 1.50698 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.38320 * 119.96576 * 269.72177 * 10 9 7 12 12 C 1.38279 * 120.14055 * 179.76258 * 11 10 9 13 13 C 1.38121 * 120.06625 * 0.51629 * 12 11 10 14 14 C 1.38860 * 119.93148 * 359.74429 * 13 12 11 15 15 O 1.35755 * 120.06973 * 179.97438 * 14 13 12 16 16 C 1.34832 * 116.99667 * 354.48523 * 15 14 13 17 17 H 1.07995 * 120.00554 * 5.06358 * 16 15 14 18 18 C 1.38660 * 119.99633 * 185.05749 * 16 15 14 19 19 N 1.31556 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99886 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47134 * 90.00116 * 20 18 16 22 22 H 1.48501 * 109.47403 * 210.00162 * 20 18 16 23 23 H 1.48501 * 109.47371 * 330.00388 * 20 18 16 24 24 C 1.38085 * 119.96634 * 89.99950 * 10 9 7 25 25 C 1.50700 * 109.47168 * 185.00075 * 4 3 2 26 26 O 1.20826 * 120.00144 * 239.99486 * 25 4 3 27 27 O 1.34228 * 120.00253 * 59.99763 * 25 4 3 28 28 C 1.45195 * 117.00192 * 180.02562 * 27 25 4 29 29 H 1.09007 * 109.46546 * 300.00185 * 1 2 3 30 30 H 1.09005 * 109.46922 * 59.99528 * 1 2 3 31 31 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46711 * 239.99693 * 2 1 3 33 33 H 1.09005 * 109.46922 * 120.00472 * 2 1 3 34 34 H 1.08997 * 109.46967 * 60.00198 * 3 2 1 35 35 H 1.09000 * 109.47076 * 300.00227 * 3 2 1 36 36 H 0.96997 * 119.99933 * 25.00244 * 6 4 3 37 37 H 1.08997 * 109.47091 * 60.00219 * 9 7 6 38 38 H 1.09003 * 109.47227 * 300.00670 * 9 7 6 39 39 H 1.08005 * 119.92876 * 0.02562 * 11 10 9 40 40 H 1.07997 * 119.97151 * 180.25535 * 12 11 10 41 41 H 1.08005 * 120.03714 * 179.71820 * 13 12 11 42 42 H 0.97001 * 120.00070 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03129 * 359.95667 * 24 10 9 44 44 H 1.09001 * 109.47181 * 299.99939 * 28 27 25 45 45 H 1.08997 * 109.47237 * 60.00356 * 28 27 25 46 46 H 1.09001 * 109.47173 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 7 4.0579 0.8588 -1.2527 7 6 5.2799 0.2922 -1.3010 8 8 5.9755 0.2651 -0.3079 9 6 5.7814 -0.3086 -2.5888 10 6 7.1628 -0.8720 -2.3758 11 6 8.2740 -0.0766 -2.5900 12 6 9.5430 -0.5884 -2.3909 13 6 9.7050 -1.8995 -1.9875 14 6 8.5917 -2.7021 -1.7768 15 8 8.7476 -3.9912 -1.3808 16 6 10.0087 -4.4647 -1.3205 17 1 10.8431 -3.8034 -1.5015 18 6 10.2342 -5.8007 -1.0258 19 7 9.2178 -6.6062 -0.8047 20 14 11.9812 -6.4565 -0.9415 21 1 12.4944 -6.3209 0.4455 22 1 11.9921 -7.8882 -1.3356 23 1 12.8460 -5.6817 -1.8672 24 6 7.3181 -2.1835 -1.9725 25 6 4.0725 2.8577 0.1232 26 8 4.7669 3.3305 -0.7453 27 8 3.7487 3.5932 1.1983 28 6 4.2675 4.9483 1.2505 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.5015 0.8802 -2.0469 37 1 5.8177 0.4616 -3.3592 38 1 5.1086 -1.1062 -2.9039 39 1 8.1500 0.9477 -2.9094 40 1 10.4086 0.0363 -2.5550 41 1 10.6966 -2.3001 -1.8366 42 1 9.3756 -7.5407 -0.5983 43 1 6.4503 -2.8051 -1.8090 44 1 5.3570 4.9213 1.2315 45 1 3.9029 5.5103 0.3907 46 1 3.9316 5.4309 2.1684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091143075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:19 Heat of formation + Delta-G solvation = -159.251573 kcal Electronic energy + Delta-G solvation = -28388.164583 eV Core-core repulsion = 24242.512432 eV Total energy + Delta-G solvation = -4145.652152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94194 -41.00227 -40.32951 -38.33928 -37.66491 -37.14596 -34.48594 -34.32701 -33.46606 -31.22933 -30.74843 -28.70926 -28.14627 -27.22148 -25.59617 -23.38668 -23.05325 -22.26679 -21.84783 -21.53453 -19.51917 -18.92000 -18.76484 -18.18743 -18.05240 -17.35169 -16.94330 -16.73150 -16.54874 -16.11932 -15.84854 -15.55751 -15.51374 -14.98828 -14.95957 -14.63663 -14.60798 -14.31213 -14.07133 -14.01021 -13.59688 -13.42291 -13.10400 -12.97807 -12.86370 -12.72700 -12.49077 -12.41810 -12.31794 -12.23150 -12.10695 -12.05518 -11.85625 -11.62390 -11.54299 -11.21267 -11.05902 -10.79900 -10.35452 -9.65115 -8.98834 -8.46854 -6.15250 0.50068 0.74507 1.04879 1.32078 1.34120 1.43736 1.51941 1.79736 2.17509 2.20651 2.84317 3.17021 3.43011 3.46936 3.73914 3.77743 3.93486 4.06483 4.10603 4.21542 4.27321 4.28018 4.31176 4.35332 4.43141 4.56799 4.62094 4.62996 4.66418 4.72982 4.77674 4.89142 5.00230 5.05090 5.12812 5.18027 5.28124 5.30461 5.31065 5.36402 5.50653 5.63899 5.71818 5.74504 6.02876 6.21121 6.44023 6.60890 6.97713 7.18927 7.78789 8.76671 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.002427 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.972371 B =11535.287214 C =12486.743539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.108 4.108 4 C 0.156 3.844 5 H 0.112 0.888 6 N -0.698 5.698 7 C 0.522 3.478 8 O -0.573 6.573 9 C -0.090 4.090 10 C -0.026 4.026 11 C -0.184 4.184 12 C -0.075 4.075 13 C -0.246 4.246 14 C 0.113 3.887 15 O -0.232 6.232 16 C -0.415 4.415 17 H 0.099 0.901 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.253 1.253 24 C -0.188 4.188 25 C 0.447 3.553 26 O -0.529 6.529 27 O -0.360 6.360 28 C 0.028 3.972 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.424 0.576 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.118 0.882 42 H 0.273 0.727 43 H 0.112 0.888 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.955 21.050 -1.188 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.145 4.145 4 C 0.048 3.952 5 H 0.130 0.870 6 N -0.353 5.353 7 C 0.310 3.690 8 O -0.451 6.451 9 C -0.129 4.129 10 C -0.027 4.027 11 C -0.202 4.202 12 C -0.093 4.093 13 C -0.266 4.266 14 C 0.063 3.937 15 O -0.139 6.139 16 C -0.491 4.491 17 H 0.116 0.884 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.177 1.177 24 C -0.207 4.207 25 C 0.289 3.711 26 O -0.418 6.418 27 O -0.275 6.275 28 C -0.065 4.065 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.263 0.737 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.130 0.870 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.463 20.836 -0.619 27.193 hybrid contribution 1.009 -0.414 -0.016 1.090 sum -16.454 20.422 -0.636 26.234 Atomic orbital electron populations 1.21743 0.94264 1.02123 1.02585 1.21540 0.96998 0.94977 1.02751 1.21867 0.87315 0.99586 1.05766 1.20625 0.97875 0.86369 0.90283 0.86998 1.45605 1.17781 1.58400 1.13513 1.21009 0.80776 0.76642 0.90554 1.90757 1.57059 1.58822 1.38431 1.20690 0.93468 1.03282 0.95450 1.19165 0.95447 0.91498 0.96585 1.20940 0.91788 1.00210 1.07265 1.21098 0.98369 0.93563 0.96233 1.21291 0.98287 0.96300 1.10677 1.19862 0.95217 0.85305 0.93296 1.83936 1.30992 1.22839 1.76134 1.21816 0.81839 0.94984 1.50453 0.88355 1.26591 1.04885 0.94688 0.95850 1.70184 1.33310 1.05950 1.46497 0.84587 0.74247 0.77906 0.79447 1.18951 1.19265 1.17698 1.20214 0.94113 0.96974 1.09439 1.24809 0.77189 0.89879 0.79204 1.90650 1.36158 1.73072 1.41902 1.86486 1.69605 1.28232 1.43176 1.23542 0.99355 0.78335 1.05257 0.92138 0.91665 0.92695 0.91305 0.92408 0.87865 0.88828 0.73675 0.84324 0.85064 0.84316 0.83967 0.86400 0.91813 0.87002 0.93173 0.91343 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.13 -1.36 5.82 30.60 0.18 -1.18 16 3 C -0.11 -1.11 4.72 30.59 0.14 -0.97 16 4 C 0.16 2.92 2.48 44.24 0.11 3.03 16 5 H 0.11 2.53 7.58 -2.38 -0.02 2.51 16 6 N -0.70 -13.15 4.06 -446.10 -1.81 -14.96 16 7 C 0.52 14.62 7.65 87.66 0.67 15.30 16 8 O -0.57 -22.67 15.70 -3.04 -0.05 -22.72 16 9 C -0.09 -2.19 5.83 29.10 0.17 -2.02 16 10 C -0.03 -0.96 4.37 -19.88 -0.09 -1.04 16 11 C -0.18 -6.51 9.70 22.30 0.22 -6.29 16 12 C -0.07 -2.88 10.04 22.25 0.22 -2.66 16 13 C -0.25 -11.70 9.17 22.39 0.21 -11.49 16 14 C 0.11 6.05 6.65 22.58 0.15 6.20 16 15 O -0.23 -14.67 9.76 -22.81 -0.22 -14.89 16 16 C -0.41 -25.24 9.49 67.92 0.64 -24.59 16 17 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 18 C -0.02 -1.35 5.49 84.84 0.47 -0.88 16 19 N -0.92 -57.99 13.67 21.61 0.30 -57.70 16 20 Si 1.02 44.31 29.55 68.60 2.03 46.33 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 24 C -0.19 -8.58 9.65 22.39 0.22 -8.36 16 25 C 0.45 10.27 7.29 71.24 0.52 10.79 16 26 O -0.53 -15.34 16.07 21.96 0.35 -14.98 16 27 O -0.36 -6.97 10.37 -51.40 -0.53 -7.51 16 28 C 0.03 0.40 10.56 113.37 1.20 1.60 16 29 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.76 7.75 -2.39 -0.02 0.74 16 33 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.10 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.42 4.67 8.60 -92.71 -0.80 3.88 16 37 H 0.14 2.39 8.08 -2.39 -0.02 2.37 16 38 H 0.13 2.47 8.08 -2.39 -0.02 2.45 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.12 5.64 5.64 -2.91 -0.02 5.62 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 44 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 45 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 46 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -88.13 395.85 6.00 -82.13 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.20 Total: 27.43 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 5.74 Total: -23.14 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.52 Total: -72.65 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -0.45 Total: -60.10 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -88.13 6.00 -82.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091143075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.123 kcal (2) G-P(sol) polarization free energy of solvation -88.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds