Wall clock time and date at job start Tue Mar 31 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46963 * 2 1 4 4 C 1.53001 * 109.46718 * 119.99711 * 2 1 3 5 5 C 1.52996 * 109.47271 * 64.94312 * 4 2 1 6 6 N 1.46503 * 109.47067 * 184.80279 * 5 4 2 7 7 C 1.46498 * 119.99734 * 265.08077 * 6 5 4 8 8 C 1.50699 * 109.47367 * 284.12148 * 7 6 5 9 9 H 1.07997 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00066 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99881 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00113 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47148 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47004 * 120.00412 * 12 10 8 15 15 H 1.48499 * 109.47595 * 240.00366 * 12 10 8 16 16 C 1.34773 * 120.00106 * 85.08431 * 6 5 4 17 17 O 1.21627 * 120.00103 * 6.66680 * 16 6 5 18 18 C 1.47288 * 120.00068 * 186.66503 * 16 6 5 19 19 C 1.39932 * 120.12940 * 325.83615 * 18 16 6 20 20 C 1.37909 * 119.97528 * 179.97438 * 19 18 16 21 21 C 1.39726 * 120.11081 * 0.02562 * 20 19 18 22 22 C 1.38606 * 120.14802 * 359.94433 * 21 20 19 23 23 C 1.38458 * 120.17905 * 0.11705 * 22 21 20 24 24 O 1.35728 * 120.07405 * 179.97438 * 23 22 21 25 25 O 1.36371 * 108.56054 * 179.97438 * 21 20 19 26 26 C 1.43952 * 105.55419 * 342.62977 * 25 21 20 27 27 O 1.36635 * 131.34962 * 179.97438 * 20 19 18 28 28 H 1.09002 * 109.47252 * 304.80562 * 1 2 3 29 29 H 1.09000 * 109.46797 * 64.80952 * 1 2 3 30 30 H 1.09004 * 109.47037 * 184.80359 * 1 2 3 31 31 H 1.09002 * 109.47107 * 239.99706 * 2 1 3 32 32 H 1.08998 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46743 * 299.99902 * 3 2 1 34 34 H 1.08997 * 109.47170 * 59.99533 * 3 2 1 35 35 H 1.08997 * 109.47395 * 304.93868 * 4 2 1 36 36 H 1.09000 * 109.46756 * 184.94432 * 4 2 1 37 37 H 1.09006 * 109.47153 * 64.80218 * 5 4 2 38 38 H 1.08997 * 109.47226 * 304.80161 * 5 4 2 39 39 H 1.08998 * 109.47381 * 44.12702 * 7 6 5 40 40 H 1.09008 * 109.47115 * 164.12468 * 7 6 5 41 41 H 0.97005 * 119.99753 * 179.97438 * 11 10 8 42 42 H 1.07990 * 120.01557 * 359.95986 * 19 18 16 43 43 H 1.07999 * 119.90949 * 179.97438 * 22 21 20 44 44 H 0.96697 * 113.99923 * 269.93723 * 24 23 22 45 45 H 1.09009 * 110.55665 * 145.87519 * 26 25 21 46 46 H 1.09000 * 110.56429 * 268.71356 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6339 -2.1951 1.1888 6 7 2.0213 -2.8599 2.4355 7 6 3.2973 -3.5747 2.5186 8 6 3.1837 -4.8913 1.7942 9 1 2.2541 -5.1678 1.3191 10 6 4.2669 -5.7425 1.7372 11 7 5.3991 -5.4056 2.3154 12 14 4.1263 -7.3741 0.8387 13 1 2.7583 -7.5143 0.2781 14 1 5.1197 -7.4190 -0.2642 15 1 4.3893 -8.4859 1.7873 16 6 1.2037 -2.8139 3.5059 17 8 0.0939 -2.3269 3.4031 18 6 1.6540 -3.3534 4.8003 19 6 2.4952 -4.4709 4.8411 20 6 2.9153 -4.9731 6.0549 21 6 2.5021 -4.3683 7.2447 22 6 1.6694 -3.2607 7.2099 23 6 1.2411 -2.7498 5.9965 24 8 0.4253 -1.6655 5.9649 25 8 3.0503 -5.0495 8.2912 26 6 3.4662 -6.3173 7.7510 27 8 3.7215 -6.0323 6.3632 28 1 -0.3634 0.5866 0.8438 29 1 -0.3633 0.4374 -0.9299 30 1 -0.3633 -1.0241 0.0861 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6062 -0.2610 2.1371 36 1 3.1263 -0.6451 1.2947 37 1 2.1360 -2.6761 0.3493 38 1 0.5545 -2.2695 1.0576 39 1 4.0813 -2.9733 2.0585 40 1 3.5449 -3.7558 3.5646 41 1 6.1610 -6.0046 2.2755 42 1 2.8150 -4.9401 3.9226 43 1 1.3520 -2.7965 8.1319 44 1 -0.5171 -1.8817 5.9807 45 1 4.3745 -6.6640 8.2440 46 1 2.6702 -7.0554 7.8501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094107574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:53 Heat of formation + Delta-G solvation = -104.082957 kcal Electronic energy + Delta-G solvation = -30215.722175 eV Core-core repulsion = 26072.462314 eV Total energy + Delta-G solvation = -4143.259861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94121 -39.81142 -38.05846 -36.38713 -36.11690 -35.76565 -34.65830 -32.65854 -30.92778 -29.05192 -28.74343 -27.18080 -26.96501 -25.67318 -23.88358 -23.36024 -22.50912 -22.14840 -19.75783 -19.26164 -18.77382 -17.44178 -17.20436 -16.87840 -16.43113 -15.94601 -15.55246 -15.29665 -14.94328 -14.63185 -14.55248 -14.38320 -14.06767 -13.75681 -13.70911 -13.26999 -13.23173 -12.84918 -12.72680 -12.40446 -12.38090 -12.14018 -12.01688 -11.83058 -11.55826 -11.11545 -11.06529 -10.94823 -10.78779 -10.66681 -10.46279 -10.38655 -10.30322 -10.14300 -9.92964 -9.73897 -9.15127 -8.76777 -8.30248 -7.82788 -7.62775 -6.27633 -4.37595 1.04439 1.44233 2.84236 3.17399 3.25710 3.27749 3.31877 3.62232 3.75607 4.07306 4.28688 4.49746 4.70337 4.79500 4.99878 5.04930 5.07573 5.15844 5.18879 5.27671 5.28348 5.44593 5.69581 5.76960 5.80710 5.88597 5.95008 6.03944 6.06656 6.14814 6.15305 6.23034 6.27578 6.34524 6.42340 6.44154 6.49741 6.68310 6.71077 6.76936 6.81048 7.16737 7.31597 7.48146 7.66480 7.87923 7.92450 8.30379 8.70125 8.94199 9.31212 10.77308 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008519 B = 0.005241 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3285.811746 B = 5341.544733 C = 7986.345620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.121 3.879 6 N -0.586 5.586 7 C 0.207 3.793 8 C -0.547 4.547 9 H 0.066 0.934 10 C 0.069 3.931 11 N -0.878 5.878 12 Si 0.896 3.104 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.567 3.433 17 O -0.560 6.560 18 C -0.150 4.150 19 C -0.053 4.053 20 C 0.011 3.989 21 C 0.063 3.937 22 C -0.153 4.153 23 C 0.167 3.833 24 O -0.479 6.479 25 O -0.311 6.311 26 C 0.211 3.789 27 O -0.295 6.295 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.065 0.935 41 H 0.268 0.732 42 H 0.204 0.796 43 H 0.140 0.860 44 H 0.396 0.604 45 H 0.129 0.871 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 3.700 5.346 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.002 4.002 6 N -0.314 5.314 7 C 0.088 3.912 8 C -0.586 4.586 9 H 0.084 0.916 10 C -0.136 4.136 11 N -0.514 5.514 12 Si 0.723 3.277 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.206 1.206 16 C 0.356 3.644 17 O -0.442 6.442 18 C -0.154 4.154 19 C -0.071 4.071 20 C -0.033 4.033 21 C 0.018 3.982 22 C -0.172 4.172 23 C 0.121 3.879 24 O -0.290 6.290 25 O -0.227 6.227 26 C 0.099 3.901 27 O -0.211 6.211 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.220 0.780 43 H 0.158 0.842 44 H 0.253 0.747 45 H 0.146 0.854 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.378 4.127 5.383 8.657 hybrid contribution -0.003 -1.419 -0.218 1.436 sum -5.381 2.708 5.165 7.935 Atomic orbital electron populations 1.21886 0.95332 1.02282 1.00941 1.21035 0.95861 0.95855 0.98456 1.21822 1.00866 0.96249 1.01261 1.21990 1.00990 0.95941 0.97760 1.21386 1.00731 0.91273 0.86789 1.48063 1.21561 1.51201 1.10604 1.20284 0.79599 0.91494 0.99872 1.21476 0.98708 1.02490 1.35885 0.91570 1.24987 0.94903 0.98609 0.95075 1.69938 1.02168 1.37108 1.42213 0.86465 0.78463 0.83204 0.79608 1.19480 1.20707 1.20606 1.17683 0.84548 0.78850 0.83342 1.90665 1.20193 1.48273 1.85058 1.20084 1.03289 0.97819 0.94194 1.21746 0.92141 0.94544 0.98669 1.19643 0.97016 0.92270 0.94336 1.19769 0.96834 0.96264 0.85331 1.19938 1.01759 0.96945 0.98607 1.17769 0.93769 0.86838 0.89553 1.84707 1.20527 1.27772 1.95981 1.87273 1.74548 1.28870 1.31998 1.25601 1.01024 0.85579 0.77938 1.87516 1.59278 1.47720 1.26581 0.92789 0.93405 0.92083 0.91234 0.92823 0.93107 0.92879 0.91862 0.91933 0.90046 0.90783 0.94933 0.91759 0.92244 0.77988 0.84196 0.74673 0.85398 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.06 37.16 0.34 -1.56 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 4 C -0.13 -2.09 4.98 -26.73 -0.13 -2.23 16 5 C 0.12 2.25 5.22 -4.04 -0.02 2.23 16 6 N -0.59 -12.40 2.50 -176.38 -0.44 -12.84 16 7 C 0.21 4.85 4.66 -5.19 -0.02 4.82 16 8 C -0.55 -13.67 7.54 -34.44 -0.26 -13.93 16 9 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 11 N -0.88 -23.40 13.29 55.43 0.74 -22.67 16 12 Si 0.90 19.96 29.54 -169.99 -5.02 14.93 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.57 12.05 7.23 -12.58 -0.09 11.96 16 17 O -0.56 -12.23 15.51 -12.99 -0.20 -12.43 16 18 C -0.15 -2.98 5.52 -104.85 -0.58 -3.56 16 19 C -0.05 -1.10 7.41 -39.07 -0.29 -1.39 16 20 C 0.01 0.22 7.13 -39.15 -0.28 -0.06 16 21 C 0.06 1.07 7.15 -38.89 -0.28 0.79 16 22 C -0.15 -2.41 9.98 -39.36 -0.39 -2.80 16 23 C 0.17 2.90 6.68 -38.77 -0.26 2.64 16 24 O -0.48 -7.63 12.09 -37.13 -0.45 -8.08 16 25 O -0.31 -4.73 11.39 -45.26 -0.52 -5.25 16 26 C 0.21 2.75 8.88 101.05 0.90 3.65 16 27 O -0.29 -5.42 11.41 -46.13 -0.53 -5.94 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.84 6.26 -51.93 -0.32 0.52 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 38 H 0.07 1.37 5.60 -51.93 -0.29 1.08 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.57 3.80 -52.29 -0.20 1.37 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.20 4.73 3.88 -52.49 -0.20 4.53 16 43 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.40 4.73 9.06 45.56 0.41 5.15 16 45 H 0.13 1.23 8.14 -51.92 -0.42 0.81 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -29.55 376.33 -7.78 -37.33 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.64 Total: 9.94 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.39 Total: -0.66 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.29 Total: -35.51 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.69 Total: -31.71 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.55 -7.78 -37.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.755 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds