Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46963 * 2 1 4 4 C 1.53001 * 109.46718 * 119.99711 * 2 1 3 5 5 C 1.52996 * 109.47271 * 64.94312 * 4 2 1 6 6 N 1.46503 * 109.47067 * 184.80279 * 5 4 2 7 7 C 1.46498 * 119.99734 * 265.08077 * 6 5 4 8 8 C 1.50699 * 109.47367 * 284.12148 * 7 6 5 9 9 H 1.07997 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00066 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99881 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00113 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47148 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47004 * 120.00412 * 12 10 8 15 15 H 1.48499 * 109.47595 * 240.00366 * 12 10 8 16 16 C 1.34773 * 120.00106 * 85.08431 * 6 5 4 17 17 O 1.21627 * 120.00103 * 6.66680 * 16 6 5 18 18 C 1.47288 * 120.00068 * 186.66503 * 16 6 5 19 19 C 1.39932 * 120.12940 * 325.83615 * 18 16 6 20 20 C 1.37909 * 119.97528 * 179.97438 * 19 18 16 21 21 C 1.39726 * 120.11081 * 0.02562 * 20 19 18 22 22 C 1.38606 * 120.14802 * 359.94433 * 21 20 19 23 23 C 1.38458 * 120.17905 * 0.11705 * 22 21 20 24 24 O 1.35728 * 120.07405 * 179.97438 * 23 22 21 25 25 O 1.36371 * 108.56054 * 179.97438 * 21 20 19 26 26 C 1.43952 * 105.55419 * 342.62977 * 25 21 20 27 27 O 1.36635 * 131.34962 * 179.97438 * 20 19 18 28 28 H 1.09002 * 109.47252 * 304.80562 * 1 2 3 29 29 H 1.09000 * 109.46797 * 64.80952 * 1 2 3 30 30 H 1.09004 * 109.47037 * 184.80359 * 1 2 3 31 31 H 1.09002 * 109.47107 * 239.99706 * 2 1 3 32 32 H 1.08998 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46743 * 299.99902 * 3 2 1 34 34 H 1.08997 * 109.47170 * 59.99533 * 3 2 1 35 35 H 1.08997 * 109.47395 * 304.93868 * 4 2 1 36 36 H 1.09000 * 109.46756 * 184.94432 * 4 2 1 37 37 H 1.09006 * 109.47153 * 64.80218 * 5 4 2 38 38 H 1.08997 * 109.47226 * 304.80161 * 5 4 2 39 39 H 1.08998 * 109.47381 * 44.12702 * 7 6 5 40 40 H 1.09008 * 109.47115 * 164.12468 * 7 6 5 41 41 H 0.97005 * 119.99753 * 179.97438 * 11 10 8 42 42 H 1.07990 * 120.01557 * 359.95986 * 19 18 16 43 43 H 1.07999 * 119.90949 * 179.97438 * 22 21 20 44 44 H 0.96697 * 113.99923 * 269.93723 * 24 23 22 45 45 H 1.09009 * 110.55665 * 145.87519 * 26 25 21 46 46 H 1.09000 * 110.56429 * 268.71356 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6339 -2.1951 1.1888 6 7 2.0213 -2.8599 2.4355 7 6 3.2973 -3.5747 2.5186 8 6 3.1837 -4.8913 1.7942 9 1 2.2541 -5.1678 1.3191 10 6 4.2669 -5.7425 1.7372 11 7 5.3991 -5.4056 2.3154 12 14 4.1263 -7.3741 0.8387 13 1 2.7583 -7.5143 0.2781 14 1 5.1197 -7.4190 -0.2642 15 1 4.3893 -8.4859 1.7873 16 6 1.2037 -2.8139 3.5059 17 8 0.0939 -2.3269 3.4031 18 6 1.6540 -3.3534 4.8003 19 6 2.4952 -4.4709 4.8411 20 6 2.9153 -4.9731 6.0549 21 6 2.5021 -4.3683 7.2447 22 6 1.6694 -3.2607 7.2099 23 6 1.2411 -2.7498 5.9965 24 8 0.4253 -1.6655 5.9649 25 8 3.0503 -5.0495 8.2912 26 6 3.4662 -6.3173 7.7510 27 8 3.7215 -6.0323 6.3632 28 1 -0.3634 0.5866 0.8438 29 1 -0.3633 0.4374 -0.9299 30 1 -0.3633 -1.0241 0.0861 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6062 -0.2610 2.1371 36 1 3.1263 -0.6451 1.2947 37 1 2.1360 -2.6761 0.3493 38 1 0.5545 -2.2695 1.0576 39 1 4.0813 -2.9733 2.0585 40 1 3.5449 -3.7558 3.5646 41 1 6.1610 -6.0046 2.2755 42 1 2.8150 -4.9401 3.9226 43 1 1.3520 -2.7965 8.1319 44 1 -0.5171 -1.8817 5.9807 45 1 4.3745 -6.6640 8.2440 46 1 2.6702 -7.0554 7.8501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094107574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = -121.760403 kcal Electronic energy + Delta-G solvation = -30216.488727 eV Core-core repulsion = 26072.462314 eV Total energy + Delta-G solvation = -4144.026412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.23124 -41.35015 -39.46868 -37.70543 -37.47272 -37.16179 -36.20150 -34.52969 -32.33510 -30.41346 -30.24225 -28.91544 -27.99413 -26.85073 -25.28738 -25.11685 -24.01796 -23.54845 -20.97175 -20.74310 -20.10806 -18.78576 -18.68397 -18.49115 -18.07950 -17.41084 -16.84460 -16.82750 -16.33568 -16.21979 -15.95535 -15.83234 -15.37064 -15.21563 -15.07739 -14.56289 -14.52076 -14.42827 -14.09608 -14.02063 -13.74424 -13.51766 -13.28188 -13.10150 -12.85882 -12.79941 -12.71409 -12.32182 -12.23941 -12.12903 -11.93165 -11.73632 -11.64236 -11.51669 -11.48504 -11.38044 -10.81387 -10.62353 -9.81216 -9.48252 -9.06065 -8.23961 -6.40235 -0.37866 0.05381 1.38693 1.41999 1.52226 1.57597 1.76523 2.18651 2.36467 2.43012 2.60887 3.04433 3.23268 3.36169 3.60017 3.79286 3.96082 3.96832 4.02211 4.06321 4.08887 4.21500 4.34318 4.47945 4.58415 4.70494 4.77194 4.80320 4.83131 4.86507 4.90421 4.95226 5.00240 5.04685 5.09758 5.13797 5.16811 5.20885 5.26916 5.33178 5.49427 5.51997 5.64261 5.79095 5.97915 6.00620 6.53048 6.73180 6.75937 7.21999 7.34488 8.80608 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008519 B = 0.005241 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3285.811746 B = 5341.544733 C = 7986.345620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.117 4.117 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.222 3.778 8 C -0.550 4.550 9 H 0.057 0.943 10 C 0.029 3.971 11 N -0.907 5.907 12 Si 0.954 3.046 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.563 3.437 17 O -0.571 6.571 18 C -0.173 4.173 19 C -0.072 4.072 20 C -0.005 4.005 21 C 0.075 3.925 22 C -0.138 4.138 23 C 0.178 3.822 24 O -0.483 6.483 25 O -0.308 6.308 26 C 0.201 3.799 27 O -0.325 6.325 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.009 0.991 40 H 0.059 0.941 41 H 0.269 0.731 42 H 0.172 0.828 43 H 0.177 0.823 44 H 0.414 0.586 45 H 0.165 0.835 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 3.822 6.430 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.155 4.155 5 C -0.003 4.003 6 N -0.320 5.320 7 C 0.102 3.898 8 C -0.588 4.588 9 H 0.075 0.925 10 C -0.173 4.173 11 N -0.545 5.545 12 Si 0.779 3.221 13 H -0.193 1.193 14 H -0.202 1.202 15 H -0.203 1.203 16 C 0.352 3.648 17 O -0.454 6.454 18 C -0.177 4.177 19 C -0.090 4.090 20 C -0.049 4.049 21 C 0.029 3.971 22 C -0.157 4.157 23 C 0.131 3.869 24 O -0.296 6.296 25 O -0.224 6.224 26 C 0.091 3.909 27 O -0.242 6.242 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.189 0.811 43 H 0.194 0.806 44 H 0.275 0.725 45 H 0.182 0.818 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.169 4.251 6.468 9.898 hybrid contribution 0.204 -1.474 -0.447 1.554 sum -5.965 2.777 6.022 8.919 Atomic orbital electron populations 1.21849 0.94709 1.01550 1.01964 1.21041 0.96344 0.96703 0.96838 1.21790 1.00865 0.94974 1.02206 1.21880 1.00255 0.94534 0.98868 1.21515 1.00621 0.92483 0.85714 1.48100 1.20904 1.51356 1.11642 1.19955 0.79984 0.90705 0.99141 1.21562 0.98322 1.03200 1.35696 0.92465 1.25643 0.94558 1.01433 0.95680 1.70029 1.02779 1.38259 1.43448 0.85566 0.78421 0.79582 0.78564 1.19268 1.20155 1.20311 1.17969 0.84362 0.78606 0.83854 1.90633 1.20372 1.48991 1.85389 1.20068 1.04570 0.98599 0.94488 1.21351 0.93799 0.95535 0.98345 1.19697 0.97463 0.93056 0.94661 1.19856 0.96129 0.96151 0.84922 1.20192 1.00301 0.95987 0.99188 1.17779 0.93474 0.86477 0.89185 1.84663 1.21847 1.27245 1.95881 1.87272 1.74137 1.29628 1.31331 1.26224 1.03942 0.85032 0.75696 1.87472 1.59501 1.47696 1.29497 0.93263 0.91096 0.93425 0.90642 0.92858 0.91047 0.93035 0.93347 0.92892 0.90615 0.90723 0.97273 0.92335 0.92153 0.81145 0.80577 0.72522 0.81833 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.06 71.98 0.65 -2.91 16 2 C -0.09 -2.37 2.92 -10.79 -0.03 -2.40 16 3 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 4 C -0.12 -3.92 4.98 30.59 0.15 -3.76 16 5 C 0.12 4.58 5.22 86.38 0.45 5.04 16 6 N -0.59 -26.20 2.50 -830.19 -2.08 -28.28 16 7 C 0.22 11.00 4.66 85.63 0.40 11.40 16 8 C -0.55 -28.57 7.54 25.60 0.19 -28.38 16 9 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 10 C 0.03 1.52 5.45 84.65 0.46 1.98 16 11 N -0.91 -49.81 13.29 21.45 0.28 -49.53 16 12 Si 0.95 41.57 29.54 68.60 2.03 43.60 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 16 C 0.56 24.61 7.23 86.62 0.63 25.24 16 17 O -0.57 -25.29 15.51 13.32 0.21 -25.08 16 18 C -0.17 -7.03 5.52 -20.01 -0.11 -7.14 16 19 C -0.07 -3.08 7.41 22.60 0.17 -2.91 16 20 C 0.00 -0.18 7.13 22.55 0.16 -0.02 16 21 C 0.08 2.41 7.15 22.72 0.16 2.57 16 22 C -0.14 -3.99 9.98 22.41 0.22 -3.76 16 23 C 0.18 5.96 6.68 22.80 0.15 6.11 16 24 O -0.48 -14.59 12.09 -73.07 -0.88 -15.48 16 25 O -0.31 -8.54 11.39 -74.55 -0.85 -9.39 16 26 C 0.20 4.77 8.88 113.37 1.01 5.78 16 27 O -0.32 -11.83 11.41 -77.64 -0.89 -12.72 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.30 6.26 -2.38 -0.01 1.28 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.95 7.92 -2.38 -0.02 2.94 16 38 H 0.07 2.85 5.60 -2.39 -0.01 2.84 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 3.04 3.80 -2.72 -0.01 3.03 16 41 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 42 H 0.17 8.44 3.88 -2.92 -0.01 8.43 16 43 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 44 H 0.41 9.12 9.06 -74.06 -0.67 8.44 16 45 H 0.16 2.63 8.14 -2.38 -0.02 2.61 16 46 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.37 376.33 3.50 -61.87 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.35 Total: 30.66 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.33 Total: 4.35 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.79 Total: -77.81 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -2.41 Total: -62.67 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -65.37 3.50 -61.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.893 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds