Wall clock time and date at job start Tue Mar 31 2020 18:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99842 * 2 1 4 4 O 1.20818 * 120.00666 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99281 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47185 * 60.00290 * 5 3 2 7 7 N 1.46507 * 109.46451 * 179.97438 * 5 3 2 8 8 C 1.34781 * 119.99539 * 204.99659 * 7 5 3 9 9 O 1.21282 * 120.00102 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99728 * 180.02562 * 8 7 5 11 11 C 1.50698 * 109.46930 * 180.02562 * 10 8 7 12 12 C 1.38297 * 119.93202 * 89.99982 * 11 10 8 13 13 C 1.38101 * 120.07230 * 180.02562 * 12 11 10 14 14 C 1.38886 * 119.92536 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47448 * 89.99502 * 20 18 16 22 22 H 1.48501 * 109.47175 * 209.99712 * 20 18 16 23 23 H 1.48506 * 109.47415 * 329.99678 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38110 * 119.92772 * 359.48927 * 24 14 13 26 26 C 1.53001 * 109.47338 * 299.99608 * 5 3 2 27 27 C 1.53001 * 109.46717 * 60.00402 * 26 5 3 28 28 C 1.52999 * 109.47097 * 180.02562 * 26 5 3 29 29 H 1.08998 * 109.47276 * 59.99309 * 1 2 3 30 30 H 1.08994 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46468 * 299.99828 * 1 2 3 32 32 H 0.96995 * 120.00045 * 25.00856 * 7 5 3 33 33 H 1.09003 * 109.46768 * 60.00063 * 10 8 7 34 34 H 1.09004 * 109.46918 * 300.00219 * 10 8 7 35 35 H 1.07999 * 119.96698 * 0.02562 * 12 11 10 36 36 H 1.07992 * 120.03608 * 179.97438 * 13 12 11 37 37 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 39 39 H 1.07996 * 119.96227 * 180.23396 * 25 24 14 40 40 H 1.08997 * 109.46966 * 300.00436 * 26 5 3 41 41 H 1.09004 * 109.47042 * 60.00324 * 27 26 5 42 42 H 1.08998 * 109.46817 * 180.02562 * 27 26 5 43 43 H 1.08998 * 109.47261 * 300.00064 * 27 26 5 44 44 H 1.08999 * 109.47116 * 60.00041 * 28 26 5 45 45 H 1.08998 * 109.46898 * 180.02562 * 28 26 5 46 46 H 1.09005 * 109.47102 * 300.00483 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9557 0.7808 -0.8909 7 7 3.9818 2.6797 -0.0011 8 6 5.1872 3.0258 -0.4949 9 8 5.9277 2.1742 -0.9392 10 6 5.6147 4.4709 -0.4949 11 6 6.9915 4.5874 -1.0965 12 6 7.1353 4.7847 -2.4577 13 6 8.3956 4.8913 -3.0122 14 6 9.5193 4.8007 -2.2011 15 8 10.7595 4.9056 -2.7431 16 6 10.8306 5.2113 -4.0543 17 1 9.9276 5.2803 -4.6425 18 6 12.0634 5.4371 -4.6476 19 7 13.1635 5.3535 -3.9311 20 14 12.1619 5.8613 -6.4641 21 1 12.0891 7.3348 -6.6330 22 1 13.4453 5.3621 -7.0201 23 1 11.0297 5.2241 -7.1835 24 6 9.3718 4.5973 -0.8353 25 6 8.1085 4.4963 -0.2862 26 6 4.1139 0.5809 1.2483 27 6 3.6800 -0.8863 1.2482 28 6 5.6418 0.6615 1.2480 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 3.3894 3.3607 0.3541 33 1 5.6323 4.8445 0.5290 34 1 4.9102 5.0582 -1.0839 35 1 6.2610 4.8555 -3.0879 36 1 8.5072 5.0449 -4.0753 37 1 14.0259 5.5110 -4.3462 38 1 10.2438 4.5220 -0.2026 39 1 7.9931 4.3419 0.7764 40 1 3.7246 1.0749 2.1385 41 1 4.0695 -1.3802 0.3579 42 1 4.0697 -1.3804 2.1381 43 1 2.5915 -0.9433 1.2486 44 1 5.9505 1.7068 1.2483 45 1 6.0318 0.1668 2.1375 46 1 6.0315 0.1678 0.3577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110170024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:24 Heat of formation + Delta-G solvation = -125.301048 kcal Electronic energy + Delta-G solvation = -28572.973913 eV Core-core repulsion = 24428.793966 eV Total energy + Delta-G solvation = -4144.179946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.32252 -39.86299 -38.82528 -37.11900 -36.72199 -36.09320 -33.49729 -32.41110 -31.29086 -30.10692 -29.21013 -27.46474 -27.13487 -26.04168 -24.95384 -22.01058 -21.92709 -21.32948 -20.45049 -20.20571 -18.20524 -17.93989 -17.66522 -17.03423 -16.89228 -16.45447 -16.01137 -15.58840 -14.68319 -14.58989 -14.42981 -14.16293 -13.94731 -13.87837 -13.56175 -13.43704 -13.40829 -13.00518 -12.85367 -12.66448 -12.59394 -12.45681 -12.21888 -11.82226 -11.75158 -11.49103 -11.39442 -11.22985 -11.08206 -10.92917 -10.84056 -10.73899 -10.72709 -10.58295 -10.39583 -9.75389 -9.28907 -9.26219 -8.78473 -8.10316 -7.12202 -6.41050 -3.99429 1.68915 1.99232 2.29878 2.34819 2.71266 3.12993 3.16241 3.19959 3.21259 4.00294 4.16525 4.41708 4.57847 4.61097 4.66811 4.75064 4.90074 4.99411 5.08372 5.11751 5.15334 5.28411 5.31855 5.36794 5.39954 5.54294 5.69744 5.70780 5.77698 5.79041 5.84873 5.89279 5.90337 6.10118 6.16241 6.26316 6.35279 6.46560 6.74819 6.95969 7.09739 7.21463 7.28034 7.38051 7.41715 7.49648 7.88519 8.04401 8.24110 9.04734 9.75735 10.77100 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.002143 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.292748 B =13062.412344 C =13347.387006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.346 6.346 3 C 0.462 3.538 4 O -0.503 6.503 5 C 0.159 3.841 6 H 0.126 0.874 7 N -0.728 5.728 8 C 0.515 3.485 9 O -0.510 6.510 10 C -0.078 4.078 11 C -0.170 4.170 12 C -0.056 4.056 13 C -0.232 4.232 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.192 4.192 25 C -0.058 4.058 26 C -0.098 4.098 27 C -0.157 4.157 28 C -0.139 4.139 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.407 0.593 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.269 0.731 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.067 -8.941 10.602 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C 0.304 3.696 4 O -0.390 6.390 5 C 0.052 3.948 6 H 0.144 0.856 7 N -0.385 5.385 8 C 0.303 3.697 9 O -0.383 6.383 10 C -0.118 4.118 11 C -0.171 4.171 12 C -0.074 4.074 13 C -0.252 4.252 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.211 4.211 25 C -0.077 4.077 26 C -0.118 4.118 27 C -0.215 4.215 28 C -0.196 4.196 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.243 0.757 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.251 -9.270 10.303 27.068 hybrid contribution -0.619 0.588 -0.818 1.182 sum -23.870 -8.682 9.485 27.113 Atomic orbital electron populations 1.23343 0.76306 1.03971 1.02725 1.86622 1.23428 1.32479 1.83594 1.23826 0.91878 0.81753 0.72117 1.90666 1.66901 1.36313 1.45141 1.20542 0.85944 0.85533 1.02795 0.85634 1.45952 1.19704 1.07080 1.65749 1.21064 0.80032 0.92184 0.76464 1.90764 1.51935 1.51587 1.43989 1.20396 0.96630 0.91859 1.02887 1.18599 0.92149 1.12518 0.93876 1.20507 0.96185 0.97085 0.93626 1.21101 0.92084 1.11433 1.00546 1.19393 0.85811 0.92246 0.92223 1.83976 1.22112 1.75932 1.26149 1.21324 0.94558 1.48707 0.82071 0.89095 1.25287 0.94212 0.96748 1.00343 1.70039 0.97882 1.45583 1.36328 0.85715 0.78272 0.78883 0.80572 1.19910 1.20289 1.19222 1.20148 0.97148 1.11137 0.92654 1.20386 0.91474 0.97822 0.97974 1.21467 0.98064 0.96627 0.95634 1.22059 1.02645 0.94281 1.02500 1.21875 0.92568 1.02853 1.02299 0.91729 0.87810 0.91749 0.75666 0.88801 0.88815 0.87857 0.85628 0.92074 0.86579 0.87399 0.90850 0.91980 0.92117 0.90700 0.92206 0.92855 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 101.05 1.07 1.23 16 2 O -0.35 -2.73 7.48 -39.25 -0.29 -3.03 16 3 C 0.46 4.42 7.26 36.01 0.26 4.69 16 4 O -0.50 -5.76 15.59 -18.74 -0.29 -6.06 16 5 C 0.16 1.56 2.38 -69.07 -0.16 1.39 16 6 H 0.13 1.37 7.58 -51.93 -0.39 0.98 16 7 N -0.73 -7.48 4.84 -54.92 -0.27 -7.74 16 8 C 0.52 6.73 6.18 -10.98 -0.07 6.66 16 9 O -0.51 -8.60 13.16 5.56 0.07 -8.52 16 10 C -0.08 -0.96 5.83 -29.03 -0.17 -1.13 16 11 C -0.17 -2.92 4.38 -104.58 -0.46 -3.37 16 12 C -0.06 -1.05 9.69 -39.61 -0.38 -1.44 16 13 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 14 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 15 O -0.18 -5.20 9.76 0.05 0.00 -5.20 16 16 C -0.39 -11.12 9.49 30.89 0.29 -10.82 16 17 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 20 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 25 C -0.06 -1.06 9.69 -39.60 -0.38 -1.44 16 26 C -0.10 -0.86 2.68 -90.62 -0.24 -1.11 16 27 C -0.16 -1.17 8.67 37.16 0.32 -0.85 16 28 C -0.14 -1.50 7.72 37.16 0.29 -1.21 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.41 3.56 7.79 -40.82 -0.32 3.24 16 33 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.53 5.32 -51.93 -0.28 0.25 16 44 H 0.06 0.74 5.78 -51.93 -0.30 0.44 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -34.14 381.66 -6.49 -40.63 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.45 Total: 6.17 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.75 Total: -12.94 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.49 Total: -32.65 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.51 Total: -22.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.14 -6.49 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110170024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.669 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds