Wall clock time and date at job start Tue Mar 31 2020 18:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99842 * 2 1 4 4 O 1.20818 * 120.00666 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99281 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47185 * 60.00290 * 5 3 2 7 7 N 1.46507 * 109.46451 * 179.97438 * 5 3 2 8 8 C 1.34781 * 119.99539 * 204.99659 * 7 5 3 9 9 O 1.21282 * 120.00102 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99728 * 180.02562 * 8 7 5 11 11 C 1.50698 * 109.46930 * 180.02562 * 10 8 7 12 12 C 1.38297 * 119.93202 * 89.99982 * 11 10 8 13 13 C 1.38101 * 120.07230 * 180.02562 * 12 11 10 14 14 C 1.38886 * 119.92536 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47448 * 89.99502 * 20 18 16 22 22 H 1.48501 * 109.47175 * 209.99712 * 20 18 16 23 23 H 1.48506 * 109.47415 * 329.99678 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38110 * 119.92772 * 359.48927 * 24 14 13 26 26 C 1.53001 * 109.47338 * 299.99608 * 5 3 2 27 27 C 1.53001 * 109.46717 * 60.00402 * 26 5 3 28 28 C 1.52999 * 109.47097 * 180.02562 * 26 5 3 29 29 H 1.08998 * 109.47276 * 59.99309 * 1 2 3 30 30 H 1.08994 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46468 * 299.99828 * 1 2 3 32 32 H 0.96995 * 120.00045 * 25.00856 * 7 5 3 33 33 H 1.09003 * 109.46768 * 60.00063 * 10 8 7 34 34 H 1.09004 * 109.46918 * 300.00219 * 10 8 7 35 35 H 1.07999 * 119.96698 * 0.02562 * 12 11 10 36 36 H 1.07992 * 120.03608 * 179.97438 * 13 12 11 37 37 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 39 39 H 1.07996 * 119.96227 * 180.23396 * 25 24 14 40 40 H 1.08997 * 109.46966 * 300.00436 * 26 5 3 41 41 H 1.09004 * 109.47042 * 60.00324 * 27 26 5 42 42 H 1.08998 * 109.46817 * 180.02562 * 27 26 5 43 43 H 1.08998 * 109.47261 * 300.00064 * 27 26 5 44 44 H 1.08999 * 109.47116 * 60.00041 * 28 26 5 45 45 H 1.08998 * 109.46898 * 180.02562 * 28 26 5 46 46 H 1.09005 * 109.47102 * 300.00483 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9557 0.7808 -0.8909 7 7 3.9818 2.6797 -0.0011 8 6 5.1872 3.0258 -0.4949 9 8 5.9277 2.1742 -0.9392 10 6 5.6147 4.4709 -0.4949 11 6 6.9915 4.5874 -1.0965 12 6 7.1353 4.7847 -2.4577 13 6 8.3956 4.8913 -3.0122 14 6 9.5193 4.8007 -2.2011 15 8 10.7595 4.9056 -2.7431 16 6 10.8306 5.2113 -4.0543 17 1 9.9276 5.2803 -4.6425 18 6 12.0634 5.4371 -4.6476 19 7 13.1635 5.3535 -3.9311 20 14 12.1619 5.8613 -6.4641 21 1 12.0891 7.3348 -6.6330 22 1 13.4453 5.3621 -7.0201 23 1 11.0297 5.2241 -7.1835 24 6 9.3718 4.5973 -0.8353 25 6 8.1085 4.4963 -0.2862 26 6 4.1139 0.5809 1.2483 27 6 3.6800 -0.8863 1.2482 28 6 5.6418 0.6615 1.2480 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 3.3894 3.3607 0.3541 33 1 5.6323 4.8445 0.5290 34 1 4.9102 5.0582 -1.0839 35 1 6.2610 4.8555 -3.0879 36 1 8.5072 5.0449 -4.0753 37 1 14.0259 5.5110 -4.3462 38 1 10.2438 4.5220 -0.2026 39 1 7.9931 4.3419 0.7764 40 1 3.7246 1.0749 2.1385 41 1 4.0695 -1.3802 0.3579 42 1 4.0697 -1.3804 2.1381 43 1 2.5915 -0.9433 1.2486 44 1 5.9505 1.7068 1.2483 45 1 6.0318 0.1668 2.1375 46 1 6.0315 0.1678 0.3577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110170024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:23 Heat of formation + Delta-G solvation = -147.555447 kcal Electronic energy + Delta-G solvation = -28573.938936 eV Core-core repulsion = 24428.793966 eV Total energy + Delta-G solvation = -4145.144970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09688 -41.01946 -40.39913 -38.36543 -37.71861 -37.14740 -34.46824 -34.31420 -32.72500 -31.75508 -29.95827 -28.53270 -27.81289 -27.48079 -26.53462 -23.61401 -22.86653 -22.50433 -21.45603 -21.22849 -19.83166 -19.09365 -18.78471 -18.36669 -17.73376 -17.40590 -16.82475 -16.68489 -16.34951 -16.11898 -15.87429 -15.50070 -15.13227 -15.01640 -14.79887 -14.59453 -14.40794 -14.31168 -14.05683 -13.74818 -13.60369 -13.56084 -13.09798 -13.01860 -12.95880 -12.70547 -12.53436 -12.40103 -12.27621 -12.24150 -12.11055 -12.05133 -11.83970 -11.63046 -11.49211 -11.16484 -10.90928 -10.73493 -10.17339 -9.73797 -8.88409 -8.46438 -6.14350 0.64090 0.67769 0.94982 1.34290 1.34559 1.44494 1.52098 1.71758 2.18264 2.29304 2.85735 3.19085 3.48728 3.53914 3.69079 3.84458 3.89971 4.07462 4.11093 4.21289 4.25243 4.32439 4.35271 4.39329 4.49885 4.62063 4.63447 4.72948 4.73441 4.82601 4.84437 4.97538 5.06856 5.10622 5.15976 5.17144 5.18464 5.30890 5.33155 5.48342 5.49480 5.58857 5.73762 5.80180 6.04210 6.24596 6.48060 6.54823 6.98157 7.27832 7.80003 8.76980 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.002143 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.292748 B =13062.412344 C =13347.387006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.346 6.346 3 C 0.469 3.531 4 O -0.523 6.523 5 C 0.157 3.843 6 H 0.113 0.887 7 N -0.713 5.713 8 C 0.520 3.480 9 O -0.555 6.555 10 C -0.078 4.078 11 C -0.143 4.143 12 C -0.060 4.060 13 C -0.244 4.244 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.206 4.206 25 C -0.054 4.054 26 C -0.091 4.091 27 C -0.154 4.154 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.418 0.582 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.272 0.728 38 H 0.112 0.888 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.103 -9.140 11.575 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C 0.313 3.687 4 O -0.412 6.412 5 C 0.050 3.950 6 H 0.131 0.869 7 N -0.369 5.369 8 C 0.308 3.692 9 O -0.432 6.432 10 C -0.117 4.117 11 C -0.144 4.144 12 C -0.078 4.078 13 C -0.263 4.263 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.559 5.559 20 Si 0.839 3.161 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.225 4.225 25 C -0.072 4.072 26 C -0.111 4.111 27 C -0.211 4.211 28 C -0.192 4.192 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.256 0.744 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.165 0.835 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -27.384 -9.478 11.323 31.112 hybrid contribution 0.268 0.541 -0.867 1.057 sum -27.117 -8.937 10.456 30.406 Atomic orbital electron populations 1.23634 0.74601 1.05954 1.02759 1.86609 1.25015 1.31438 1.83034 1.23630 0.91531 0.81954 0.71634 1.90661 1.67244 1.36977 1.46274 1.20560 0.86484 0.85108 1.02864 0.86934 1.45743 1.18905 1.07737 1.64557 1.21041 0.80311 0.91941 0.75920 1.90783 1.53363 1.52757 1.46258 1.20515 0.93809 0.92051 1.05329 1.19179 0.94615 1.07503 0.93106 1.20912 0.95646 0.96123 0.95100 1.21208 0.93081 1.11959 1.00091 1.19951 0.85550 0.94442 0.93833 1.83936 1.24498 1.79001 1.26622 1.21805 0.95391 1.49165 0.82557 0.88312 1.26609 0.93420 0.96364 1.05819 1.70186 0.98619 1.48270 1.38857 0.84578 0.78733 0.79115 0.73704 1.18612 1.19514 1.17870 1.20437 0.98962 1.11416 0.91664 1.20856 0.90141 0.96024 1.00147 1.21419 0.96541 0.97587 0.95526 1.22032 1.03097 0.93264 1.02694 1.21800 0.94054 1.01660 1.01638 0.92070 0.84944 0.91367 0.74360 0.85028 0.85713 0.84636 0.86655 0.91857 0.87016 0.83456 0.89520 0.92640 0.91141 0.89936 0.93596 0.91758 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.56 113.37 1.20 1.38 16 2 O -0.35 -4.59 7.48 -51.39 -0.38 -4.97 16 3 C 0.47 7.83 7.26 71.24 0.52 8.35 16 4 O -0.52 -10.59 15.59 21.99 0.34 -10.24 16 5 C 0.16 2.73 2.38 44.25 0.11 2.84 16 6 H 0.11 2.33 7.58 -2.38 -0.02 2.31 16 7 N -0.71 -12.39 4.84 -446.05 -2.16 -14.55 16 8 C 0.52 11.93 6.18 87.66 0.54 12.47 16 9 O -0.55 -17.84 13.16 -3.04 -0.04 -17.88 16 10 C -0.08 -1.54 5.83 29.10 0.17 -1.37 16 11 C -0.14 -4.48 4.38 -19.84 -0.09 -4.56 16 12 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 13 C -0.24 -11.23 9.17 22.39 0.21 -11.03 16 14 C 0.11 5.88 6.65 22.58 0.15 6.03 16 15 O -0.23 -14.65 9.76 -22.72 -0.22 -14.87 16 16 C -0.41 -24.94 9.49 67.92 0.64 -24.29 16 17 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 18 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 19 N -0.92 -57.93 13.67 21.62 0.30 -57.64 16 20 Si 1.02 44.15 29.55 68.60 2.03 46.17 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 24 C -0.21 -9.17 9.99 22.39 0.22 -8.94 16 25 C -0.05 -1.85 9.69 22.25 0.22 -1.64 16 26 C -0.09 -1.39 2.68 -10.79 -0.03 -1.42 16 27 C -0.15 -1.94 8.67 71.98 0.62 -1.32 16 28 C -0.13 -2.70 7.72 71.98 0.56 -2.15 16 29 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 30 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.51 8.13 -2.39 -0.02 0.49 16 32 H 0.42 5.65 7.79 -92.71 -0.72 4.93 16 33 H 0.13 1.76 8.09 -2.39 -0.02 1.74 16 34 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 37 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 39 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.93 5.32 -2.39 -0.01 0.92 16 44 H 0.04 1.04 5.78 -2.39 -0.01 1.03 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.05 1.14 7.53 -2.38 -0.02 1.13 16 Total: -1.00 -81.13 381.66 5.86 -75.26 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.29 Total: 27.30 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 5.72 Total: -28.59 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.86 Total: -72.19 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -0.30 Total: -47.96 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -81.13 5.86 -75.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110170024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.292 kcal (2) G-P(sol) polarization free energy of solvation -81.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds