Wall clock time and date at job start Tue Mar 31 2020 19:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47065 * 2 1 4 4 C 1.52998 * 109.47174 * 240.00246 * 2 1 3 5 5 O 1.45194 * 109.47489 * 119.99898 * 2 1 3 6 6 C 1.34230 * 116.99827 * 60.00066 * 5 2 1 7 7 O 1.20831 * 119.99978 * 0.02562 * 6 5 2 8 8 C 1.50703 * 120.00365 * 180.02562 * 6 5 2 9 9 N 1.46495 * 109.47317 * 180.02562 * 8 6 5 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 8 6 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09003 * 109.47296 * 299.99522 * 1 2 3 29 29 H 1.09001 * 109.47075 * 59.99768 * 1 2 3 30 30 H 1.09004 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47119 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47363 * 300.00055 * 3 2 1 33 33 H 1.09004 * 109.47116 * 60.00730 * 3 2 1 34 34 H 1.08992 * 109.47408 * 299.99717 * 4 2 1 35 35 H 1.09001 * 109.47131 * 60.00020 * 4 2 1 36 36 H 1.09008 * 109.47320 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47278 * 59.99661 * 8 6 5 38 38 H 1.09005 * 109.46966 * 299.99861 * 8 6 5 39 39 H 0.97005 * 120.00223 * 0.02562 * 9 8 6 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9567 -2.5027 0.5077 8 6 2.1174 -2.7434 2.5441 9 7 1.5942 -4.1102 2.4773 10 6 1.8825 -4.9907 3.4560 11 8 2.5748 -4.6514 4.3923 12 6 1.3439 -6.3965 3.3876 13 6 1.8080 -7.1715 4.5938 14 6 1.0417 -7.1805 5.7450 15 6 1.4640 -7.8902 6.8519 16 6 2.6600 -8.5949 6.8082 17 8 3.0776 -9.2939 7.8945 18 6 2.2325 -9.3580 8.9431 19 1 1.3084 -8.7994 8.9269 20 6 2.5499 -10.1412 10.0424 21 7 3.6754 -10.8221 10.0621 22 14 1.3787 -10.2306 11.4949 23 1 0.4196 -11.3456 11.2896 24 1 2.1521 -10.4660 12.7406 25 1 0.6333 -8.9513 11.6093 26 6 3.4304 -8.5788 5.6529 27 6 2.9997 -7.8718 4.5474 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.7532 -2.2584 3.4497 38 1 3.2069 -2.7723 2.5603 39 1 1.0409 -4.3816 1.7282 40 1 1.7078 -6.8813 2.4817 41 1 0.2544 -6.3678 3.3718 42 1 0.1116 -6.6327 5.7782 43 1 0.8650 -7.8972 7.7504 44 1 3.8976 -11.3697 10.8312 45 1 4.3630 -9.1222 5.6174 46 1 3.5962 -7.8625 3.6471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115458714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:26 Heat of formation + Delta-G solvation = -127.661419 kcal Electronic energy + Delta-G solvation = -27555.319769 eV Core-core repulsion = 23411.037469 eV Total energy + Delta-G solvation = -4144.282300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40227 -39.79893 -38.77675 -37.61066 -36.47243 -34.75583 -34.40745 -32.45038 -31.46206 -30.10588 -28.81738 -27.89956 -27.88900 -26.32701 -25.01957 -22.71943 -21.92534 -21.05633 -20.39250 -19.94357 -17.97937 -17.92324 -17.26063 -16.90624 -16.83365 -16.36494 -15.99391 -15.47084 -14.88220 -14.58355 -14.44215 -14.30632 -14.19542 -14.05121 -13.60166 -13.51504 -13.33788 -13.24498 -12.98571 -12.66448 -12.63324 -12.47599 -12.42197 -12.40510 -11.92298 -11.79476 -11.69653 -11.47282 -11.23628 -10.89785 -10.82354 -10.72811 -10.58208 -10.49802 -10.39343 -9.84377 -9.35771 -9.28248 -8.78319 -8.10160 -7.12150 -6.40807 -3.99236 1.68499 1.93610 2.30037 2.34447 2.69437 3.13781 3.16408 3.21188 3.21949 4.00493 4.05476 4.20736 4.24662 4.39717 4.57807 4.90843 4.91425 4.99253 5.04516 5.08770 5.15331 5.18951 5.20809 5.28974 5.32327 5.33252 5.35533 5.39621 5.52544 5.69868 5.75284 5.76979 5.77697 5.89696 5.98501 6.13151 6.26563 6.46729 6.75024 6.96202 7.09841 7.25533 7.28393 7.37338 7.41621 7.49726 7.88730 8.04602 8.21729 9.04929 9.75916 10.77346 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.001695 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.018316 B =16512.768595 C =16792.896108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.346 6.346 6 C 0.464 3.536 7 O -0.501 6.501 8 C 0.125 3.875 9 N -0.734 5.734 10 C 0.514 3.486 11 O -0.517 6.517 12 C -0.076 4.076 13 C -0.172 4.172 14 C -0.056 4.056 15 C -0.233 4.233 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.410 0.590 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.127 0.873 44 H 0.269 0.731 45 H 0.117 0.883 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.348 20.729 -21.981 30.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.262 6.262 6 C 0.308 3.692 7 O -0.390 6.390 8 C 0.000 4.000 9 N -0.393 5.393 10 C 0.301 3.699 11 O -0.390 6.390 12 C -0.116 4.116 13 C -0.173 4.173 14 C -0.074 4.074 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.211 4.211 27 C -0.077 4.077 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.135 0.865 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.709 20.579 -21.337 30.189 hybrid contribution -0.934 0.036 0.234 0.963 sum -6.643 20.615 -21.103 30.240 Atomic orbital electron populations 1.22500 0.93782 1.04831 1.02971 1.22266 0.94556 0.92368 0.82710 1.21869 1.02411 0.92354 1.03244 1.22500 1.01854 1.03133 0.96591 1.86541 1.69568 1.24683 1.45434 1.23500 0.77311 0.81147 0.87284 1.90578 1.35388 1.69856 1.43132 1.20614 1.01596 0.83289 0.94475 1.45919 1.55775 1.10101 1.27532 1.21138 0.80277 0.87326 0.81132 1.90768 1.36699 1.78882 1.32663 1.20378 1.01728 0.90369 0.99153 1.18619 0.98385 1.05291 0.95024 1.20512 0.97952 0.96691 0.92264 1.21106 0.99482 1.04683 0.99931 1.19394 0.91882 0.90554 0.87839 1.83976 1.41868 1.61860 1.20462 1.21331 1.02271 1.29342 0.93762 0.89074 1.25287 0.97297 0.95468 0.98511 1.70040 1.22028 1.27247 1.30509 0.85713 0.79150 0.79010 0.79555 1.19911 1.20291 1.19216 1.20154 1.01925 1.06901 0.92123 1.20405 0.94643 0.95738 0.96936 0.91832 0.90877 0.89756 0.91293 0.90188 0.91298 0.89751 0.90880 0.91833 0.87212 0.87210 0.75330 0.88698 0.88739 0.87787 0.85579 0.92073 0.86534 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 8.37 37.15 0.31 -0.89 16 2 C 0.12 0.79 1.13 -90.62 -0.10 0.69 16 3 C -0.14 -0.68 8.85 37.16 0.33 -0.35 16 4 C -0.18 -1.19 8.37 37.16 0.31 -0.88 16 5 O -0.35 -2.91 9.89 -39.26 -0.39 -3.29 16 6 C 0.46 4.09 7.34 36.01 0.26 4.35 16 7 O -0.50 -4.96 11.17 -18.75 -0.21 -5.17 16 8 C 0.13 1.13 6.27 -5.19 -0.03 1.09 16 9 N -0.73 -7.33 5.53 -61.47 -0.34 -7.67 16 10 C 0.51 6.89 7.82 -10.98 -0.09 6.80 16 11 O -0.52 -9.31 16.03 5.55 0.09 -9.22 16 12 C -0.08 -0.95 5.83 -29.04 -0.17 -1.12 16 13 C -0.17 -2.99 4.38 -104.58 -0.46 -3.45 16 14 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 15 C -0.23 -5.25 9.17 -39.39 -0.36 -5.61 16 16 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 17 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 18 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 22 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.19 -4.22 9.99 -39.39 -0.39 -4.61 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.70 5.89 -51.93 -0.31 0.39 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.69 5.89 -51.93 -0.31 0.39 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.41 3.44 7.44 -40.82 -0.30 3.14 16 40 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -34.58 387.44 -7.02 -41.60 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.53 Total: 5.33 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.22 Total: -13.10 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.42 Total: -32.61 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.51 Total: -22.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.58 -7.02 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115458714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.062 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds