Wall clock time and date at job start Tue Mar 31 2020 19:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47065 * 2 1 4 4 C 1.52998 * 109.47174 * 240.00246 * 2 1 3 5 5 O 1.45194 * 109.47489 * 119.99898 * 2 1 3 6 6 C 1.34230 * 116.99827 * 60.00066 * 5 2 1 7 7 O 1.20831 * 119.99978 * 0.02562 * 6 5 2 8 8 C 1.50703 * 120.00365 * 180.02562 * 6 5 2 9 9 N 1.46495 * 109.47317 * 180.02562 * 8 6 5 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 8 6 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09003 * 109.47296 * 299.99522 * 1 2 3 29 29 H 1.09001 * 109.47075 * 59.99768 * 1 2 3 30 30 H 1.09004 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47119 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47363 * 300.00055 * 3 2 1 33 33 H 1.09004 * 109.47116 * 60.00730 * 3 2 1 34 34 H 1.08992 * 109.47408 * 299.99717 * 4 2 1 35 35 H 1.09001 * 109.47131 * 60.00020 * 4 2 1 36 36 H 1.09008 * 109.47320 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47278 * 59.99661 * 8 6 5 38 38 H 1.09005 * 109.46966 * 299.99861 * 8 6 5 39 39 H 0.97005 * 120.00223 * 0.02562 * 9 8 6 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9567 -2.5027 0.5077 8 6 2.1174 -2.7434 2.5441 9 7 1.5942 -4.1102 2.4773 10 6 1.8825 -4.9907 3.4560 11 8 2.5748 -4.6514 4.3923 12 6 1.3439 -6.3965 3.3876 13 6 1.8080 -7.1715 4.5938 14 6 1.0417 -7.1805 5.7450 15 6 1.4640 -7.8902 6.8519 16 6 2.6600 -8.5949 6.8082 17 8 3.0776 -9.2939 7.8945 18 6 2.2325 -9.3580 8.9431 19 1 1.3084 -8.7994 8.9269 20 6 2.5499 -10.1412 10.0424 21 7 3.6754 -10.8221 10.0621 22 14 1.3787 -10.2306 11.4949 23 1 0.4196 -11.3456 11.2896 24 1 2.1521 -10.4660 12.7406 25 1 0.6333 -8.9513 11.6093 26 6 3.4304 -8.5788 5.6529 27 6 2.9997 -7.8718 4.5474 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.7532 -2.2584 3.4497 38 1 3.2069 -2.7723 2.5603 39 1 1.0409 -4.3816 1.7282 40 1 1.7078 -6.8813 2.4817 41 1 0.2544 -6.3678 3.3718 42 1 0.1116 -6.6327 5.7782 43 1 0.8650 -7.8972 7.7504 44 1 3.8976 -11.3697 10.8312 45 1 4.3630 -9.1222 5.6174 46 1 3.5962 -7.8625 3.6471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115458714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:25 Heat of formation + Delta-G solvation = -150.345162 kcal Electronic energy + Delta-G solvation = -27556.303410 eV Core-core repulsion = 23411.037469 eV Total energy + Delta-G solvation = -4145.265941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07146 -41.04810 -40.35331 -38.41830 -38.06286 -35.59639 -35.06991 -34.38574 -32.91888 -31.75766 -29.83989 -28.38021 -28.30953 -27.87052 -26.78067 -23.61695 -23.48338 -22.37777 -21.44698 -20.70029 -19.83063 -18.95644 -18.65921 -17.88735 -17.54396 -17.31253 -16.83139 -16.61441 -16.31678 -16.00794 -15.79022 -15.50875 -15.38050 -15.09347 -14.96400 -14.60501 -14.41878 -14.27627 -14.25118 -13.95626 -13.57233 -13.41359 -13.09015 -12.97044 -12.95628 -12.89381 -12.75232 -12.46213 -12.45684 -12.27974 -12.25187 -12.20981 -12.10567 -11.44474 -11.16351 -11.13439 -11.02892 -10.75478 -10.26900 -9.74111 -8.88847 -8.46162 -6.14260 0.63802 0.67204 1.00531 1.32164 1.34884 1.44999 1.52745 1.66558 2.18702 2.32190 2.86215 3.19281 3.43236 3.53761 3.72314 3.77376 3.86218 3.93721 4.07327 4.13378 4.20737 4.22617 4.39443 4.51006 4.56326 4.60668 4.62085 4.73680 4.76395 4.78311 4.82737 4.86850 4.87223 5.10483 5.12567 5.16318 5.24213 5.25568 5.26603 5.32854 5.45008 5.58520 5.73607 5.79746 6.04289 6.24484 6.47800 6.62520 6.98367 7.24129 7.80030 8.77276 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.001695 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.018316 B =16512.768595 C =16792.896108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.352 6.352 6 C 0.470 3.530 7 O -0.512 6.512 8 C 0.124 3.876 9 N -0.716 5.716 10 C 0.519 3.481 11 O -0.570 6.570 12 C -0.076 4.076 13 C -0.146 4.146 14 C -0.059 4.059 15 C -0.245 4.245 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.254 1.254 26 C -0.207 4.207 27 C -0.057 4.057 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.420 0.580 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.112 0.888 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.493 23.042 -24.692 34.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.269 6.269 6 C 0.314 3.686 7 O -0.401 6.401 8 C -0.001 4.001 9 N -0.375 5.375 10 C 0.308 3.692 11 O -0.448 6.448 12 C -0.115 4.115 13 C -0.148 4.148 14 C -0.077 4.077 15 C -0.264 4.264 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.178 1.178 26 C -0.226 4.226 27 C -0.074 4.074 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.260 0.740 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.891 22.940 -24.147 34.228 hybrid contribution -0.305 -0.445 0.667 0.858 sum -8.196 22.495 -23.480 33.534 Atomic orbital electron populations 1.22473 0.93594 1.03858 1.03861 1.22562 0.94846 0.93269 0.82176 1.21900 1.02448 0.91047 1.04227 1.22472 1.01839 1.02224 0.97240 1.86538 1.69602 1.24395 1.46343 1.23358 0.77018 0.81324 0.86924 1.90583 1.35907 1.70129 1.43499 1.20667 1.01863 0.82757 0.94842 1.45693 1.54844 1.10086 1.26831 1.21141 0.79481 0.87845 0.80781 1.90779 1.39353 1.79847 1.34846 1.20506 1.03970 0.89186 0.97851 1.19229 0.96664 1.02764 0.96098 1.20945 0.99452 0.95829 0.91499 1.21231 0.98780 1.05241 1.01145 1.19957 0.93889 0.91858 0.88102 1.83936 1.43467 1.64683 1.22011 1.21827 1.02824 1.29993 0.94382 0.88216 1.26615 0.99267 0.94709 1.01566 1.70189 1.24646 1.29196 1.31927 0.84571 0.76718 0.79727 0.75069 1.18607 1.19546 1.17801 1.20444 1.01828 1.07744 0.92603 1.20889 0.95361 0.94272 0.96927 0.91826 0.89155 0.91555 0.91276 0.88246 0.91295 0.91545 0.89162 0.91806 0.86892 0.86831 0.74030 0.84984 0.85233 0.84289 0.86498 0.91861 0.87004 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.37 71.98 0.60 -1.39 16 2 C 0.11 1.23 1.13 -10.80 -0.01 1.22 16 3 C -0.14 -1.00 8.85 71.98 0.64 -0.37 16 4 C -0.18 -1.99 8.37 71.98 0.60 -1.38 16 5 O -0.35 -5.32 9.89 -51.41 -0.51 -5.83 16 6 C 0.47 7.37 7.34 71.24 0.52 7.89 16 7 O -0.51 -9.08 11.17 21.95 0.25 -8.83 16 8 C 0.12 1.95 6.27 85.64 0.54 2.49 16 9 N -0.72 -11.87 5.53 -466.78 -2.58 -14.45 16 10 C 0.52 12.03 7.82 87.66 0.69 12.71 16 11 O -0.57 -19.30 16.03 -3.05 -0.05 -19.35 16 12 C -0.08 -1.49 5.83 29.10 0.17 -1.32 16 13 C -0.15 -4.62 4.38 -19.84 -0.09 -4.71 16 14 C -0.06 -2.13 9.69 22.25 0.22 -1.92 16 15 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16 16 C 0.11 5.89 6.65 22.58 0.15 6.04 16 17 O -0.23 -14.71 9.76 -22.72 -0.22 -14.93 16 18 C -0.41 -25.00 9.49 67.92 0.64 -24.36 16 19 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 20 C -0.02 -1.43 5.49 84.84 0.47 -0.96 16 21 N -0.92 -57.97 13.67 21.62 0.30 -57.67 16 22 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 26 C -0.21 -9.32 9.99 22.39 0.22 -9.09 16 27 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.99 5.89 -2.39 -0.01 0.98 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.99 5.89 -2.39 -0.01 0.98 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.42 5.38 7.44 -92.70 -0.69 4.69 16 40 H 0.13 1.76 8.08 -2.39 -0.02 1.74 16 41 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 42 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 43 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 46 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -81.97 387.44 5.30 -76.67 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.32 Total: 26.30 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 5.78 Total: -27.96 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -2.28 Total: -72.12 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.53 Total: -48.94 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -81.97 5.30 -76.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115458714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.678 kcal (2) G-P(sol) polarization free energy of solvation -81.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds