Wall clock time and date at job start Tue Mar 31 2020 18:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99943 * 2 1 4 4 O 1.20827 * 119.99781 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99761 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.37103 * 119.99667 * 263.99274 * 6 5 3 8 8 H 1.08007 * 119.99784 * 197.01175 * 7 6 5 9 9 C 1.38943 * 120.00508 * 17.00711 * 7 6 5 10 10 N 1.31416 * 119.99506 * 21.26013 * 9 7 6 11 11 Si 1.86797 * 120.00567 * 201.25609 * 9 7 6 12 12 H 1.48500 * 109.46997 * 90.00030 * 11 9 7 13 13 H 1.48500 * 109.47238 * 210.00243 * 11 9 7 14 14 H 1.48507 * 109.46972 * 330.00124 * 11 9 7 15 15 C 1.34776 * 120.00259 * 83.98541 * 6 5 3 16 16 O 1.21286 * 119.99957 * 0.02562 * 15 6 5 17 17 C 1.50704 * 119.99905 * 180.27615 * 15 6 5 18 18 O 1.42899 * 109.46997 * 179.72867 * 17 15 6 19 19 C 1.35896 * 117.00167 * 180.02562 * 18 17 15 20 20 C 1.38752 * 120.05424 * 359.72893 * 19 18 17 21 21 C 1.38132 * 119.94259 * 179.70052 * 20 19 18 22 22 C 1.38283 * 120.05207 * 0.59117 * 21 20 19 23 23 C 1.38236 * 120.11586 * 359.68005 * 22 21 20 24 24 C 1.50701 * 119.97184 * 180.02562 * 23 22 21 25 25 C 1.52996 * 109.47383 * 299.97870 * 24 23 22 26 26 C 1.53002 * 109.46991 * 59.98356 * 24 23 22 27 27 C 1.38170 * 120.05586 * 0.02562 * 23 22 21 28 28 H 1.09004 * 109.46826 * 59.99973 * 1 2 3 29 29 H 1.08995 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47137 * 300.00658 * 1 2 3 31 31 H 1.08992 * 109.47376 * 59.99887 * 5 3 2 32 32 H 1.09003 * 109.47391 * 299.99693 * 5 3 2 33 33 H 0.96999 * 119.99878 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47258 * 299.72882 * 17 15 6 35 35 H 1.08998 * 109.46881 * 59.73150 * 17 15 6 36 36 H 1.07997 * 120.03116 * 359.96839 * 20 19 18 37 37 H 1.07998 * 119.96872 * 180.29186 * 21 20 19 38 38 H 1.08005 * 119.93977 * 179.70250 * 22 21 20 39 39 H 1.09005 * 109.47219 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.47141 * 60.00009 * 25 24 23 41 41 H 1.09004 * 109.47047 * 179.97438 * 25 24 23 42 42 H 1.08998 * 109.47488 * 300.00103 * 25 24 23 43 43 H 1.09000 * 109.47481 * 59.99438 * 26 24 23 44 44 H 1.09004 * 109.47348 * 179.97438 * 26 24 23 45 45 H 1.08996 * 109.46788 * 299.99535 * 26 24 23 46 46 H 1.07999 * 120.02718 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2948 3.3015 -1.1822 8 1 4.8541 4.2254 -1.1744 9 6 3.8928 2.7430 -2.3893 10 7 2.8930 1.8907 -2.4182 11 14 4.7732 3.2038 -3.9710 12 1 5.9033 2.2678 -4.1992 13 1 3.8231 3.1196 -5.1091 14 1 5.2934 4.5906 -3.8620 15 6 4.0560 3.3609 1.1595 16 8 3.7793 2.8108 2.2044 17 6 4.4774 4.8079 1.1582 18 8 4.4727 5.3065 2.4974 19 6 4.8306 6.6056 2.6733 20 6 5.1847 7.3830 1.5799 21 6 5.5422 8.7050 1.7607 22 6 5.5591 9.2502 3.0314 23 6 5.2122 8.4762 4.1229 24 6 5.2313 9.0739 5.5062 25 6 6.6448 9.5603 5.8323 26 6 4.2595 10.2542 5.5653 27 6 4.8481 7.1551 3.9468 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7806 0.8892 33 1 2.6125 1.5005 -3.2608 34 1 5.4811 4.8936 0.7421 35 1 3.7819 5.3882 0.5520 36 1 5.1766 6.9562 0.5879 37 1 5.8132 9.3118 0.9094 38 1 5.8436 10.2827 3.1711 39 1 4.9303 8.3188 6.2325 40 1 6.9458 10.3153 5.1061 41 1 6.6584 9.9930 6.8326 42 1 7.3371 8.7195 5.7902 43 1 3.2525 9.9077 5.3330 44 1 4.2729 10.6862 6.5659 45 1 4.5604 11.0092 4.8391 46 1 4.5767 6.5509 4.7999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120582494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:42 Heat of formation + Delta-G solvation = -144.732484 kcal Electronic energy + Delta-G solvation = -28948.759699 eV Core-core repulsion = 24803.737143 eV Total energy + Delta-G solvation = -4145.022557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57798 -41.14381 -40.16253 -38.84030 -37.30800 -36.60880 -35.77840 -33.61209 -32.00740 -30.94131 -30.15204 -28.89529 -27.93542 -27.70842 -26.44952 -24.09936 -23.53395 -22.32452 -21.29245 -20.90919 -19.18659 -18.88247 -18.52928 -17.85995 -17.46721 -17.07000 -17.02636 -16.98709 -16.68974 -16.14014 -15.96490 -15.77190 -15.20347 -14.91110 -14.48761 -14.44526 -14.38356 -14.29354 -14.08173 -13.84361 -13.41019 -13.25705 -13.16184 -12.92842 -12.90745 -12.86878 -12.57518 -12.51749 -12.31933 -12.14490 -12.06792 -11.80108 -11.66256 -11.62173 -11.59013 -11.48241 -11.00287 -10.60015 -9.99694 -9.76683 -9.13865 -8.45447 -6.03740 0.37444 0.50102 1.34152 1.49625 1.56847 1.62451 1.71190 1.86423 2.20665 2.32746 2.80773 2.97720 3.05010 3.74651 3.81964 3.96444 4.03737 4.11985 4.19396 4.22543 4.29856 4.32642 4.35065 4.38782 4.38808 4.45976 4.48469 4.61081 4.64102 4.68291 4.71113 4.86521 5.03122 5.03867 5.06195 5.22957 5.32146 5.33552 5.41030 5.43756 5.52404 5.53842 5.63741 5.68752 5.88962 6.20933 6.44562 6.97199 7.14531 7.32268 7.72667 8.61798 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002884 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.529422 B = 9705.811099 C =11102.909351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.486 3.514 4 O -0.538 6.538 5 C 0.154 3.846 6 N -0.429 5.429 7 C -0.367 4.367 8 H 0.120 0.880 9 C 0.002 3.998 10 N -0.890 5.890 11 Si 1.000 3.000 12 H -0.266 1.266 13 H -0.290 1.290 14 H -0.256 1.256 15 C 0.454 3.546 16 O -0.620 6.620 17 C 0.079 3.921 18 O -0.323 6.323 19 C 0.107 3.893 20 C -0.226 4.226 21 C -0.075 4.075 22 C -0.153 4.153 23 C -0.039 4.039 24 C -0.058 4.058 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.172 4.172 28 H 0.046 0.954 29 H 0.136 0.864 30 H 0.049 0.951 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.275 0.725 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 11.303 5.893 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.329 3.671 4 O -0.426 6.426 5 C 0.028 3.972 6 N -0.148 5.148 7 C -0.493 4.493 8 H 0.138 0.862 9 C -0.201 4.201 10 N -0.528 5.528 11 Si 0.822 3.178 12 H -0.192 1.192 13 H -0.216 1.216 14 H -0.180 1.180 15 C 0.244 3.756 16 O -0.507 6.507 17 C 0.001 3.999 18 O -0.237 6.237 19 C 0.062 3.938 20 C -0.245 4.245 21 C -0.093 4.093 22 C -0.171 4.171 23 C -0.039 4.039 24 C -0.077 4.077 25 C -0.197 4.197 26 C -0.198 4.198 27 C -0.191 4.191 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.067 0.933 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.169 0.831 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.074 11.060 6.395 13.747 hybrid contribution -0.486 -0.372 -1.237 1.380 sum 4.588 10.689 5.157 12.724 Atomic orbital electron populations 1.23314 0.76084 1.04979 1.01203 1.86420 1.24189 1.33564 1.84975 1.24041 0.92612 0.80860 0.69601 1.90489 1.67363 1.37780 1.47001 1.20582 0.87223 0.85141 1.04226 1.43514 1.56714 1.08532 1.06082 1.20121 1.35578 1.11307 0.82287 0.86215 1.26170 0.94688 0.96574 1.02662 1.69959 1.22877 1.30960 1.28977 0.84827 0.77628 0.79597 0.75702 1.19158 1.21617 1.17975 1.20269 0.82885 0.88599 0.83875 1.90534 1.56220 1.70932 1.33016 1.22148 1.03268 0.92327 0.82170 1.86079 1.83406 1.24871 1.29295 1.19470 0.95795 0.82892 0.95603 1.21507 1.08070 0.96838 0.98099 1.21272 0.96023 0.93396 0.98586 1.21169 1.03429 1.01107 0.91428 1.19921 0.95462 0.91441 0.97042 1.20210 0.97820 0.98207 0.91445 1.21829 0.94079 1.01204 1.02540 1.21838 0.98013 0.96900 1.03004 1.20484 1.07740 0.96468 0.94408 0.93471 0.84592 0.93258 0.85375 0.88981 0.91452 0.87831 0.89430 0.85011 0.82944 0.83145 0.90826 0.91452 0.90786 0.93403 0.93650 0.90742 0.91441 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.49 16 2 O -0.37 -16.24 10.57 -51.43 -0.54 -16.78 16 3 C 0.49 24.72 6.13 71.23 0.44 25.15 16 4 O -0.54 -31.03 15.76 21.96 0.35 -30.68 16 5 C 0.15 7.49 5.14 85.63 0.44 7.93 16 6 N -0.43 -21.77 2.18 -639.62 -1.39 -23.16 16 7 C -0.37 -17.68 9.14 84.04 0.77 -16.91 16 8 H 0.12 5.21 6.56 -2.91 -0.02 5.19 16 9 C 0.00 0.11 4.88 84.92 0.41 0.52 16 10 N -0.89 -44.96 9.27 21.66 0.20 -44.76 16 11 Si 1.00 36.93 29.60 68.60 2.03 38.96 16 12 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 13 H -0.29 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 15 C 0.45 23.37 7.49 87.66 0.66 24.03 16 16 O -0.62 -35.69 16.18 15.99 0.26 -35.43 16 17 C 0.08 3.35 3.67 71.24 0.26 3.61 16 18 O -0.32 -14.14 9.67 -73.35 -0.71 -14.85 16 19 C 0.11 3.85 6.69 22.51 0.15 4.00 16 20 C -0.23 -6.80 9.04 22.37 0.20 -6.60 16 21 C -0.07 -1.74 10.04 22.26 0.22 -1.52 16 22 C -0.15 -3.25 8.71 22.28 0.19 -3.06 16 23 C -0.04 -0.93 4.78 -19.88 -0.10 -1.03 16 24 C -0.06 -1.06 3.09 -11.54 -0.04 -1.09 16 25 C -0.14 -2.00 9.01 71.98 0.65 -1.36 16 26 C -0.14 -2.09 9.01 71.98 0.65 -1.45 16 27 C -0.17 -5.43 9.61 22.37 0.21 -5.22 16 28 H 0.05 1.69 8.13 -2.39 -0.02 1.68 16 29 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.05 1.70 8.13 -2.38 -0.02 1.68 16 31 H 0.13 6.07 6.38 -2.39 -0.02 6.05 16 32 H 0.09 4.25 7.61 -2.39 -0.02 4.23 16 33 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 34 H 0.10 3.83 7.21 -2.39 -0.02 3.81 16 35 H 0.09 3.66 7.62 -2.39 -0.02 3.64 16 36 H 0.13 3.80 6.30 -2.91 -0.02 3.78 16 37 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.15 2.22 7.09 -2.91 -0.02 2.20 16 39 H 0.07 1.40 7.87 -2.38 -0.02 1.38 16 40 H 0.07 0.84 7.39 -2.39 -0.02 0.82 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.07 0.87 7.38 -2.39 -0.02 0.85 16 46 H 0.12 3.81 7.94 -2.91 -0.02 3.79 16 Total: -1.00 -71.41 384.22 7.50 -63.91 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.99 Total: 33.28 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 6.32 Total: 29.51 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.19 Total: -67.92 kcal Atomic # 8 Polarization: -97.09 SS G_CDS: -0.65 Total: -97.74 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -71.41 7.50 -63.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120582494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.824 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds