Wall clock time and date at job start Tue Mar 31 2020 18:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46956 * 2 1 4 4 C 1.33390 * 125.20511 * 90.00171 * 3 2 1 5 5 C 1.38422 * 114.92108 * 179.78878 * 4 3 2 6 6 C 1.33385 * 114.92144 * 0.43045 * 5 4 3 7 7 C 1.50702 * 125.20382 * 179.86131 * 6 5 4 8 8 N 1.46498 * 109.47263 * 89.71586 * 7 6 5 9 9 C 1.34774 * 119.99690 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99796 * 179.97438 * 9 8 7 12 12 N 1.46900 * 109.47239 * 176.01257 * 11 9 8 13 13 C 1.46893 * 111.00241 * 76.19759 * 12 11 9 14 14 C 1.50702 * 109.47105 * 190.00004 * 13 12 11 15 15 H 1.07995 * 120.00192 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99693 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99509 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00118 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46899 * 90.00466 * 18 16 14 20 20 H 1.48502 * 109.47006 * 209.99625 * 18 16 14 21 21 H 1.48500 * 109.47325 * 330.00151 * 18 16 14 22 22 C 1.46901 * 110.99770 * 200.15832 * 12 11 9 23 23 C 1.52994 * 109.47363 * 76.04306 * 22 12 11 24 24 C 1.47200 * 109.47268 * 174.80895 * 23 22 12 25 25 N 9.85176 * 138.67481 * 46.90527 * 6 1 2 26 26 S 1.75883 * 109.59405 * 359.59185 * 6 5 4 27 27 H 1.09005 * 109.46737 * 60.00191 * 1 2 3 28 28 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47158 * 300.00165 * 1 2 3 30 30 H 1.08995 * 109.47214 * 239.99975 * 2 1 3 31 31 H 1.09003 * 109.47221 * 119.99629 * 2 1 3 32 32 H 1.08003 * 122.53505 * 0.02562 * 4 3 2 33 33 H 1.07996 * 122.53775 * 180.26894 * 5 4 3 34 34 H 1.08998 * 109.46897 * 329.71392 * 7 6 5 35 35 H 1.09000 * 109.46812 * 209.71598 * 7 6 5 36 36 H 0.96996 * 119.99981 * 0.02562 * 8 7 6 37 37 H 1.09004 * 109.46857 * 296.01045 * 11 9 8 38 38 H 1.08997 * 109.47021 * 56.00829 * 11 9 8 39 39 H 1.09000 * 109.47148 * 310.00536 * 13 12 11 40 40 H 1.08998 * 109.47222 * 70.00088 * 13 12 11 41 41 H 0.97002 * 119.99604 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46922 * 196.04307 * 22 12 11 43 43 H 1.09002 * 109.47196 * 316.03850 * 22 12 11 44 44 H 1.08998 * 109.47223 * 294.80590 * 23 22 12 45 45 H 1.09002 * 109.47503 * 54.81112 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2886 2.1459 1.0899 5 6 2.7469 3.4284 0.8428 6 6 2.8542 3.7480 -0.4477 7 6 3.3249 5.0782 -0.9771 8 7 4.7794 5.0486 -1.1487 9 6 5.4253 6.1359 -1.6147 10 8 4.8023 7.1389 -1.8915 11 6 6.9217 6.1056 -1.7907 12 7 7.3691 7.3668 -2.3965 13 6 7.3735 8.4533 -1.4078 14 6 7.5966 9.7689 -2.1082 15 1 7.7222 9.7953 -3.1805 16 6 7.6405 10.9388 -1.3799 17 7 7.8347 12.0870 -1.9912 18 14 7.4240 10.8930 0.4750 19 1 8.7498 10.7310 1.1241 20 1 6.8009 12.1611 0.9320 21 1 6.5496 9.7507 0.8433 22 6 8.6923 7.2131 -3.0157 23 6 8.5511 6.4614 -4.3408 24 6 9.8559 6.4161 -5.0207 25 7 10.8616 6.3824 -5.5466 26 16 2.3698 2.3770 -1.4372 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1527 1.7600 2.0895 33 1 2.9961 4.1189 1.6349 34 1 3.0582 5.8650 -0.2715 35 1 2.8496 5.2755 -1.9380 36 1 5.2776 4.2462 -0.9277 37 1 7.3993 5.9797 -0.8190 38 1 7.1944 5.2737 -2.4401 39 1 6.4154 8.4759 -0.8886 40 1 8.1735 8.2853 -0.6869 41 1 7.8651 12.9101 -1.4789 42 1 9.1236 8.1970 -3.2004 43 1 9.3436 6.6507 -2.3465 44 1 8.2068 5.4455 -4.1473 45 1 7.8287 6.9753 -4.9749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132835426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:27 Heat of formation + Delta-G solvation = 25.975408 kcal Electronic energy + Delta-G solvation = -25209.122148 eV Core-core repulsion = 21546.547663 eV Total energy + Delta-G solvation = -3662.574485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.59799 -38.46802 -37.24878 -36.02435 -35.13072 -33.66785 -32.57291 -31.18420 -30.16687 -28.50522 -26.62210 -25.48634 -23.59445 -22.80292 -22.51087 -20.80895 -19.92917 -19.17807 -17.58941 -17.29098 -16.91887 -16.65204 -16.02095 -15.49612 -15.22417 -14.87009 -14.61759 -14.51749 -14.34941 -14.17853 -13.78832 -13.55409 -13.33835 -13.12424 -12.99116 -12.57817 -12.47378 -12.42670 -12.27314 -12.16311 -12.09455 -12.01917 -11.77082 -11.49392 -11.37385 -11.18238 -10.96811 -10.74942 -10.58351 -10.18212 -9.84845 -9.59838 -9.22032 -8.98627 -8.81417 -8.76369 -8.53368 -7.58406 -6.00975 -3.97376 0.57921 1.26002 1.67656 2.35379 2.96181 2.99661 3.02687 3.30284 3.35239 3.39201 3.41459 4.15940 4.28692 4.43380 4.45947 4.60298 4.82462 4.83875 4.96378 5.04637 5.12712 5.23509 5.30443 5.32163 5.35282 5.39172 5.44319 5.47502 5.50161 5.57463 5.62370 5.72390 5.77325 5.87307 5.93602 6.16976 6.19213 6.43460 6.46895 6.79312 6.89544 7.50130 7.67009 7.77200 7.78988 7.91477 8.55653 8.65999 9.06899 9.60471 11.12168 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.002556 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.508399 B =10950.266653 C =12863.320475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.173 4.173 4 C -0.142 4.142 5 C -0.114 4.114 6 C -0.199 4.199 7 C 0.195 3.805 8 N -0.740 5.740 9 C 0.509 3.491 10 O -0.496 6.496 11 C 0.031 3.969 12 N -0.507 5.507 13 C 0.164 3.836 14 C -0.504 4.504 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.873 3.127 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.063 3.937 23 C -0.026 4.026 24 C 0.219 3.781 25 N -0.453 5.453 26 S 0.114 5.886 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.043 0.957 40 H -0.018 1.018 41 H 0.263 0.737 42 H 0.105 0.895 43 H 0.034 0.966 44 H 0.098 0.902 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.807 -26.720 6.090 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.291 4.291 4 C -0.172 4.172 5 C -0.145 4.145 6 C -0.317 4.317 7 C 0.070 3.930 8 N -0.397 5.397 9 C 0.295 3.705 10 O -0.367 6.367 11 C -0.101 4.101 12 N -0.231 5.231 13 C 0.039 3.961 14 C -0.542 4.542 15 H 0.100 0.900 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.700 3.300 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.066 4.066 23 C -0.067 4.067 24 C -0.099 4.099 25 N -0.131 5.131 26 S 0.379 5.621 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.000 1.000 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.052 0.948 44 H 0.116 0.884 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.178 -25.901 3.178 28.797 hybrid contribution 0.296 -0.213 3.596 3.614 sum -11.882 -26.114 6.774 29.479 Atomic orbital electron populations 1.21797 0.94224 1.02037 1.02584 1.20114 0.96252 0.89701 1.03266 1.24616 1.07623 1.00829 0.96009 1.20072 1.03607 0.94189 0.99306 1.20184 1.01369 0.96967 0.95994 1.24492 1.10411 1.00089 0.96675 1.19546 0.81299 0.90841 1.01316 1.46140 1.06999 1.16831 1.69684 1.20818 0.90358 0.82577 0.76784 1.90791 1.68090 1.31088 1.46764 1.22006 0.92119 0.95896 1.00036 1.61564 1.24882 1.02617 1.34031 1.20281 0.96120 0.89865 0.89866 1.20955 1.48513 0.88482 0.96289 0.89963 1.24864 0.94933 0.95452 0.98018 1.69890 1.50358 0.97919 1.35706 0.86899 0.78490 0.77841 0.86733 1.20497 1.21184 1.19170 1.21974 0.90513 1.02082 0.92043 1.19390 0.86834 1.03216 0.97251 1.29265 0.94834 0.92568 0.93234 1.81149 1.12161 1.09505 1.10280 1.84380 1.64226 1.04490 1.08956 0.92374 0.92006 0.92249 0.90760 0.89999 0.84407 0.84088 0.89738 0.90504 0.76910 0.92248 0.88802 0.93923 1.00018 0.92722 0.87629 0.94823 0.88433 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.05 -0.29 6.43 -27.88 -0.18 -0.46 16 3 C -0.17 -1.27 5.76 -36.00 -0.21 -1.47 16 4 C -0.14 -1.06 10.05 -41.21 -0.41 -1.47 16 5 C -0.11 -0.95 10.05 -41.21 -0.41 -1.36 16 6 C -0.20 -1.80 5.88 -36.00 -0.21 -2.01 16 7 C 0.20 2.12 6.16 -5.19 -0.03 2.09 16 8 N -0.74 -8.20 5.55 -61.47 -0.34 -8.54 16 9 C 0.51 7.75 7.56 -10.98 -0.08 7.67 16 10 O -0.50 -10.21 15.08 5.56 0.08 -10.13 16 11 C 0.03 0.43 5.30 -4.97 -0.03 0.40 16 12 N -0.51 -9.31 4.01 -237.52 -0.95 -10.26 16 13 C 0.16 3.80 3.39 -4.98 -0.02 3.79 16 14 C -0.50 -13.98 8.78 -34.44 -0.30 -14.28 16 15 H 0.08 2.46 7.56 -52.49 -0.40 2.06 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 18 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C 0.06 1.00 4.74 -3.83 -0.02 0.98 16 23 C -0.03 -0.32 5.75 -29.52 -0.17 -0.49 16 24 C 0.22 3.14 15.43 -20.78 -0.32 2.82 16 25 N -0.45 -7.70 18.53 42.13 0.78 -6.92 16 26 S 0.11 0.93 23.31 -107.50 -2.51 -1.57 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 3.31 8.46 -40.82 -0.35 2.97 16 37 H 0.06 0.76 7.99 -51.93 -0.42 0.34 16 38 H 0.09 0.92 6.57 -51.93 -0.34 0.58 16 39 H 0.04 1.07 5.68 -51.93 -0.30 0.77 16 40 H -0.02 -0.40 7.55 -51.93 -0.39 -0.79 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.11 2.03 6.57 -51.93 -0.34 1.69 16 43 H 0.03 0.47 7.99 -51.93 -0.42 0.06 16 44 H 0.10 0.87 6.91 -51.93 -0.36 0.51 16 45 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -34.98 394.19 -9.71 -44.69 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.70 Total: -1.05 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.13 Total: -2.26 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.26 Total: -52.54 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.98 -9.71 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132835426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.664 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds