Wall clock time and date at job start Tue Mar 31 2020 18:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46956 * 2 1 4 4 C 1.33390 * 125.20511 * 90.00171 * 3 2 1 5 5 C 1.38422 * 114.92108 * 179.78878 * 4 3 2 6 6 C 1.33385 * 114.92144 * 0.43045 * 5 4 3 7 7 C 1.50702 * 125.20382 * 179.86131 * 6 5 4 8 8 N 1.46498 * 109.47263 * 89.71586 * 7 6 5 9 9 C 1.34774 * 119.99690 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99796 * 179.97438 * 9 8 7 12 12 N 1.46900 * 109.47239 * 176.01257 * 11 9 8 13 13 C 1.46893 * 111.00241 * 76.19759 * 12 11 9 14 14 C 1.50702 * 109.47105 * 190.00004 * 13 12 11 15 15 H 1.07995 * 120.00192 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99693 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99509 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00118 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46899 * 90.00466 * 18 16 14 20 20 H 1.48502 * 109.47006 * 209.99625 * 18 16 14 21 21 H 1.48500 * 109.47325 * 330.00151 * 18 16 14 22 22 C 1.46901 * 110.99770 * 200.15832 * 12 11 9 23 23 C 1.52994 * 109.47363 * 76.04306 * 22 12 11 24 24 C 1.47200 * 109.47268 * 174.80895 * 23 22 12 25 25 N 9.85176 * 138.67481 * 46.90527 * 6 1 2 26 26 S 1.75883 * 109.59405 * 359.59185 * 6 5 4 27 27 H 1.09005 * 109.46737 * 60.00191 * 1 2 3 28 28 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47158 * 300.00165 * 1 2 3 30 30 H 1.08995 * 109.47214 * 239.99975 * 2 1 3 31 31 H 1.09003 * 109.47221 * 119.99629 * 2 1 3 32 32 H 1.08003 * 122.53505 * 0.02562 * 4 3 2 33 33 H 1.07996 * 122.53775 * 180.26894 * 5 4 3 34 34 H 1.08998 * 109.46897 * 329.71392 * 7 6 5 35 35 H 1.09000 * 109.46812 * 209.71598 * 7 6 5 36 36 H 0.96996 * 119.99981 * 0.02562 * 8 7 6 37 37 H 1.09004 * 109.46857 * 296.01045 * 11 9 8 38 38 H 1.08997 * 109.47021 * 56.00829 * 11 9 8 39 39 H 1.09000 * 109.47148 * 310.00536 * 13 12 11 40 40 H 1.08998 * 109.47222 * 70.00088 * 13 12 11 41 41 H 0.97002 * 119.99604 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46922 * 196.04307 * 22 12 11 43 43 H 1.09002 * 109.47196 * 316.03850 * 22 12 11 44 44 H 1.08998 * 109.47223 * 294.80590 * 23 22 12 45 45 H 1.09002 * 109.47503 * 54.81112 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2886 2.1459 1.0899 5 6 2.7469 3.4284 0.8428 6 6 2.8542 3.7480 -0.4477 7 6 3.3249 5.0782 -0.9771 8 7 4.7794 5.0486 -1.1487 9 6 5.4253 6.1359 -1.6147 10 8 4.8023 7.1389 -1.8915 11 6 6.9217 6.1056 -1.7907 12 7 7.3691 7.3668 -2.3965 13 6 7.3735 8.4533 -1.4078 14 6 7.5966 9.7689 -2.1082 15 1 7.7222 9.7953 -3.1805 16 6 7.6405 10.9388 -1.3799 17 7 7.8347 12.0870 -1.9912 18 14 7.4240 10.8930 0.4750 19 1 8.7498 10.7310 1.1241 20 1 6.8009 12.1611 0.9320 21 1 6.5496 9.7507 0.8433 22 6 8.6923 7.2131 -3.0157 23 6 8.5511 6.4614 -4.3408 24 6 9.8559 6.4161 -5.0207 25 7 10.8616 6.3824 -5.5466 26 16 2.3698 2.3770 -1.4372 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1527 1.7600 2.0895 33 1 2.9961 4.1189 1.6349 34 1 3.0582 5.8650 -0.2715 35 1 2.8496 5.2755 -1.9380 36 1 5.2776 4.2462 -0.9277 37 1 7.3993 5.9797 -0.8190 38 1 7.1944 5.2737 -2.4401 39 1 6.4154 8.4759 -0.8886 40 1 8.1735 8.2853 -0.6869 41 1 7.8651 12.9101 -1.4789 42 1 9.1236 8.1970 -3.2004 43 1 9.3436 6.6507 -2.3465 44 1 8.2068 5.4455 -4.1473 45 1 7.8287 6.9753 -4.9749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132835426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:26 Heat of formation + Delta-G solvation = 1.907372 kcal Electronic energy + Delta-G solvation = -25210.165816 eV Core-core repulsion = 21546.547663 eV Total energy + Delta-G solvation = -3663.618153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76029 -39.15846 -38.49239 -37.30826 -36.04153 -34.66412 -34.33435 -32.44455 -31.19917 -29.87580 -27.72353 -26.44953 -24.55006 -24.16964 -23.04574 -22.19804 -21.16255 -19.84586 -18.98235 -18.51434 -18.26756 -17.65091 -17.02218 -16.65814 -16.27686 -15.99585 -15.89925 -15.63907 -15.28065 -15.00475 -14.89793 -14.64948 -14.44279 -14.31766 -14.23664 -13.83599 -13.70095 -13.43911 -13.36052 -13.17810 -13.07212 -12.92253 -12.72251 -12.60879 -12.52548 -12.24949 -12.05991 -11.88469 -11.81033 -11.57193 -11.51772 -11.38243 -10.76758 -10.68764 -10.02971 -9.48292 -9.38580 -8.98089 -8.22292 -6.22446 -0.04376 0.64449 1.07085 1.33438 1.38011 1.47630 1.72345 1.79152 1.84772 1.87787 2.36737 2.38272 2.99009 3.12770 3.59450 3.66485 3.86099 4.04213 4.15026 4.22256 4.26041 4.32909 4.44818 4.46232 4.52002 4.54400 4.67391 4.74303 4.77758 4.87216 4.90457 4.97947 5.01615 5.08105 5.21704 5.25042 5.29321 5.33554 5.38024 5.48506 5.61437 5.65893 5.99041 6.35149 6.57977 6.65362 6.78084 6.83790 7.39375 7.48534 8.94484 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.002556 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.508399 B =10950.266653 C =12863.320475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.166 4.166 4 C -0.151 4.151 5 C -0.109 4.109 6 C -0.214 4.214 7 C 0.199 3.801 8 N -0.718 5.718 9 C 0.508 3.492 10 O -0.560 6.560 11 C 0.030 3.970 12 N -0.527 5.527 13 C 0.178 3.822 14 C -0.502 4.502 15 H 0.043 0.957 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.942 3.058 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.255 1.255 22 C 0.066 3.934 23 C -0.013 4.013 24 C 0.243 3.757 25 N -0.501 5.501 26 S 0.107 5.893 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.414 0.586 37 H 0.082 0.918 38 H 0.145 0.855 39 H 0.026 0.974 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.148 0.852 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 -30.629 8.059 34.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.284 4.284 4 C -0.180 4.180 5 C -0.141 4.141 6 C -0.331 4.331 7 C 0.074 3.926 8 N -0.374 5.374 9 C 0.295 3.705 10 O -0.437 6.437 11 C -0.101 4.101 12 N -0.250 5.250 13 C 0.051 3.949 14 C -0.541 4.541 15 H 0.061 0.939 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.766 3.234 19 H -0.188 1.188 20 H -0.213 1.213 21 H -0.179 1.179 22 C -0.064 4.064 23 C -0.053 4.053 24 C -0.074 4.074 25 N -0.179 5.179 26 S 0.372 5.628 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.251 0.749 37 H 0.100 0.900 38 H 0.163 0.837 39 H 0.044 0.956 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.165 0.835 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.569 -29.897 5.156 32.839 hybrid contribution 0.347 0.897 2.926 3.080 sum -12.222 -29.001 8.082 32.492 Atomic orbital electron populations 1.21791 0.93940 1.02793 1.02022 1.20226 0.96409 0.88515 1.04288 1.24939 1.06595 1.01568 0.95333 1.20270 1.03662 0.93809 1.00283 1.20365 1.00493 0.97484 0.95806 1.24249 1.12067 0.99628 0.97154 1.19412 0.80986 0.91758 1.00491 1.45941 1.07249 1.16409 1.67798 1.21167 0.91048 0.82347 0.75946 1.90777 1.69375 1.33589 1.49947 1.22200 0.90906 0.94806 1.02149 1.61279 1.26440 1.03824 1.33504 1.19906 0.95173 0.89452 0.90384 1.21287 1.46873 0.91044 0.94869 0.93898 1.25808 0.95050 0.95082 1.03432 1.70058 1.52666 0.98775 1.37792 0.85796 0.79222 0.77982 0.80401 1.18784 1.21346 1.17873 1.21873 0.89611 1.00671 0.94199 1.19406 0.85532 1.05397 0.94930 1.29554 0.94623 0.91006 0.92204 1.81178 1.13637 1.11340 1.11789 1.84404 1.64427 1.04390 1.09582 0.93264 0.90642 0.92486 0.90196 0.88501 0.82592 0.83527 0.91044 0.91673 0.74879 0.90046 0.83747 0.95578 0.99036 0.92783 0.92172 0.92204 0.83453 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 71.98 0.71 -0.39 16 2 C -0.06 -0.43 6.43 29.85 0.19 -0.24 16 3 C -0.17 -2.03 5.76 24.59 0.14 -1.89 16 4 C -0.15 -1.86 10.05 21.22 0.21 -1.65 16 5 C -0.11 -1.60 10.05 21.22 0.21 -1.39 16 6 C -0.21 -3.54 5.88 24.59 0.14 -3.39 16 7 C 0.20 4.17 6.16 85.63 0.53 4.70 16 8 N -0.72 -14.37 5.55 -466.79 -2.59 -16.96 16 9 C 0.51 14.55 7.56 87.66 0.66 15.22 16 10 O -0.56 -23.17 15.08 -3.02 -0.05 -23.22 16 11 C 0.03 0.72 5.30 85.56 0.45 1.17 16 12 N -0.53 -18.54 4.01 -905.37 -3.63 -22.17 16 13 C 0.18 8.16 3.39 85.56 0.29 8.45 16 14 C -0.50 -28.77 8.78 25.60 0.22 -28.54 16 15 H 0.04 2.72 7.56 -2.91 -0.02 2.69 16 16 C 0.00 0.16 5.47 84.66 0.46 0.62 16 17 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 18 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 22 C 0.07 1.96 4.74 86.30 0.41 2.37 16 23 C -0.01 -0.27 5.75 28.79 0.17 -0.10 16 24 C 0.24 6.59 15.43 89.45 1.38 7.97 16 25 N -0.50 -16.66 18.53 20.00 0.37 -16.29 16 26 S 0.11 1.57 23.31 -56.49 -1.32 0.25 16 27 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.41 5.49 8.46 -92.71 -0.78 4.71 16 37 H 0.08 1.68 7.99 -2.38 -0.02 1.66 16 38 H 0.14 1.96 6.57 -2.39 -0.02 1.94 16 39 H 0.03 1.30 5.68 -2.39 -0.01 1.29 16 40 H -0.01 -0.35 7.55 -2.39 -0.02 -0.36 16 41 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.06 2.36 6.57 -2.39 -0.02 2.34 16 43 H 0.06 1.48 7.99 -2.39 -0.02 1.46 16 44 H 0.15 1.79 6.91 -2.39 -0.02 1.77 16 45 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -81.48 394.19 1.34 -80.14 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.17 Total: 8.79 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.19 Total: 2.89 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.55 Total: -115.80 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.32 Total: 0.25 kcal Total: -81.48 1.34 -80.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132835426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.052 kcal (2) G-P(sol) polarization free energy of solvation -81.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds