Wall clock time and date at job start Tue Mar 31 2020 18:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47474 * 2 1 4 4 C 1.53004 * 109.47041 * 119.99889 * 2 1 3 5 5 C 1.52993 * 109.47240 * 64.20519 * 4 2 1 6 6 H 1.09008 * 109.47026 * 307.08128 * 5 4 2 7 7 N 1.46497 * 109.47132 * 187.08312 * 5 4 2 8 8 C 1.34778 * 120.00179 * 86.67636 * 7 5 4 9 9 O 1.21507 * 120.00135 * 5.49341 * 8 7 5 10 10 O 1.34642 * 119.99699 * 185.50037 * 8 7 5 11 11 C 1.45206 * 116.99726 * 179.97438 * 10 8 7 12 12 C 1.50689 * 109.46967 * 179.97438 * 11 10 8 13 13 C 1.38242 * 120.00264 * 269.72576 * 12 11 10 14 14 C 1.38231 * 119.99872 * 179.76927 * 13 12 11 15 15 C 1.38233 * 120.00211 * 0.50710 * 14 13 12 16 16 C 1.38230 * 120.00026 * 359.74629 * 15 14 13 17 17 C 1.38237 * 119.99939 * 90.00655 * 12 11 10 18 18 C 1.50703 * 109.47383 * 67.08011 * 5 4 2 19 19 O 1.21207 * 119.99771 * 119.99802 * 18 5 4 20 20 O 1.34313 * 119.99873 * 300.00571 * 18 5 4 21 21 C 1.34919 * 117.00077 * 179.97438 * 20 18 5 22 22 H 1.08001 * 119.99481 * 359.72178 * 21 20 18 23 23 C 1.38747 * 120.00093 * 179.97438 * 21 20 18 24 24 N 1.31441 * 120.00033 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00085 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47184 * 90.00063 * 25 23 21 27 27 H 1.48510 * 109.47147 * 210.00015 * 25 23 21 28 28 H 1.48501 * 109.47244 * 330.00185 * 25 23 21 29 29 H 1.09001 * 109.46855 * 61.00481 * 1 2 3 30 30 H 1.08998 * 109.46977 * 180.99988 * 1 2 3 31 31 H 1.08999 * 109.47359 * 301.00904 * 1 2 3 32 32 H 1.08999 * 109.47526 * 239.99664 * 2 1 3 33 33 H 1.08999 * 109.47221 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47069 * 299.99799 * 3 2 1 35 35 H 1.08999 * 109.47019 * 59.99353 * 3 2 1 36 36 H 1.09006 * 109.47061 * 304.20507 * 4 2 1 37 37 H 1.08998 * 109.47552 * 184.20727 * 4 2 1 38 38 H 0.97008 * 120.00051 * 266.66928 * 7 5 4 39 39 H 1.09000 * 109.46653 * 300.00446 * 11 10 8 40 40 H 1.09006 * 109.46421 * 59.99820 * 11 10 8 41 41 H 1.07995 * 119.99298 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.99677 * 180.23667 * 14 13 12 43 43 H 1.08005 * 119.99766 * 179.72671 * 15 14 13 44 44 H 1.08001 * 120.00195 * 179.97438 * 16 15 14 45 45 H 1.07996 * 120.00019 * 359.97438 * 17 12 11 46 46 H 0.97005 * 120.00349 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6182 -2.1910 1.1976 6 1 0.5425 -2.2547 1.0327 7 7 1.9572 -2.8412 2.4658 8 6 1.0921 -2.7967 3.4983 9 8 -0.0089 -2.3051 3.3478 10 8 1.4479 -3.2969 4.6967 11 6 0.4660 -3.2145 5.7632 12 6 1.0369 -3.8199 7.0195 13 6 0.8591 -5.1657 7.2808 14 6 1.3869 -5.7221 8.4309 15 6 2.0836 -4.9306 9.3248 16 6 2.2570 -3.5839 9.0661 17 6 1.7335 -3.0284 7.9135 18 6 2.3410 -2.8817 0.0699 19 8 3.0673 -3.8237 0.3027 20 8 2.1804 -2.4533 -1.1929 21 6 2.8563 -3.1152 -2.1549 22 1 3.4946 -3.9459 -1.8921 23 6 2.7354 -2.7254 -3.4810 24 7 3.3935 -3.3706 -4.4182 25 14 1.6364 -1.2847 -3.9346 26 1 2.4266 -0.0280 -3.8962 27 1 1.0943 -1.4871 -5.3023 28 1 0.5145 -1.1938 -2.9659 29 1 -0.3633 0.4982 -0.8989 30 1 -0.3633 -1.0275 0.0179 31 1 -0.3634 0.5294 0.8808 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6164 -0.2527 2.1377 37 1 3.1273 -0.6565 1.2879 38 1 2.8043 -3.3039 2.5624 39 1 0.2139 -2.1697 5.9450 40 1 -0.4322 -3.7598 5.4731 41 1 0.3113 -5.7832 6.5844 42 1 1.2513 -6.7743 8.6331 43 1 2.4922 -5.3645 10.2255 44 1 2.8009 -2.9654 9.7647 45 1 1.8689 -1.9762 7.7113 46 1 3.3094 -3.0979 -5.3453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169347856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:31 Heat of formation + Delta-G solvation = -142.297791 kcal Electronic energy + Delta-G solvation = -28838.587124 eV Core-core repulsion = 24693.670143 eV Total energy + Delta-G solvation = -4144.916980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.67068 -39.72965 -39.24875 -37.17495 -36.05095 -35.65992 -34.02904 -32.41610 -32.37222 -31.23914 -29.57744 -26.89675 -26.70119 -25.80764 -24.10704 -22.92226 -21.87408 -21.29061 -20.48259 -19.43817 -18.98501 -18.06076 -17.40324 -16.69297 -16.63632 -16.29308 -15.68425 -15.50331 -15.36486 -15.10505 -14.65635 -14.32264 -13.88027 -13.79983 -13.69664 -13.64947 -13.20466 -13.13447 -12.69599 -12.57690 -12.48093 -12.42073 -11.98291 -11.78291 -11.53963 -11.43171 -11.41975 -11.29871 -10.85629 -10.72026 -10.64529 -10.57262 -10.45474 -10.38180 -10.17713 -9.66326 -9.38364 -9.24713 -9.21289 -9.04675 -8.74689 -6.44292 -4.20828 0.81857 1.07783 2.16990 2.83056 3.02844 3.20225 3.26140 3.34334 3.45525 3.92684 4.18249 4.19246 4.48495 4.53595 4.68643 4.79433 4.93459 4.96481 5.08085 5.11486 5.15055 5.19860 5.26504 5.31789 5.40552 5.60977 5.67185 5.70425 5.75687 5.90123 5.95435 6.03132 6.09011 6.13005 6.16853 6.16907 6.23648 6.24364 6.30357 6.41046 6.47373 6.63206 6.63927 6.89084 7.48491 7.60440 7.96089 8.36288 8.47660 8.92767 9.53846 10.63632 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019345 B = 0.002522 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.058562 B =11098.421250 C =11947.158313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.141 4.141 4 C -0.115 4.115 5 C 0.175 3.825 6 H 0.123 0.877 7 N -0.689 5.689 8 C 0.654 3.346 9 O -0.573 6.573 10 O -0.363 6.363 11 C 0.129 3.871 12 C -0.097 4.097 13 C -0.093 4.093 14 C -0.124 4.124 15 C -0.110 4.110 16 C -0.125 4.125 17 C -0.093 4.093 18 C 0.404 3.596 19 O -0.535 6.535 20 O -0.234 6.234 21 C -0.384 4.384 22 H 0.111 0.889 23 C 0.070 3.930 24 N -0.870 5.870 25 Si 0.893 3.107 26 H -0.270 1.270 27 H -0.282 1.282 28 H -0.252 1.252 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.416 0.584 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 3.969 22.856 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.199 4.199 4 C -0.154 4.154 5 C 0.069 3.931 6 H 0.140 0.860 7 N -0.349 5.349 8 C 0.407 3.593 9 O -0.462 6.462 10 O -0.278 6.278 11 C 0.055 3.945 12 C -0.098 4.098 13 C -0.111 4.111 14 C -0.142 4.142 15 C -0.129 4.129 16 C -0.143 4.143 17 C -0.111 4.111 18 C 0.249 3.751 19 O -0.430 6.430 20 O -0.141 6.141 21 C -0.460 4.460 22 H 0.128 0.872 23 C -0.134 4.134 24 N -0.508 5.508 25 Si 0.718 3.282 26 H -0.195 1.195 27 H -0.208 1.208 28 H -0.175 1.175 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.254 0.746 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.464 3.948 22.659 23.640 hybrid contribution 0.010 0.221 -0.333 0.400 sum -5.454 4.169 22.326 23.358 Atomic orbital electron populations 1.21849 0.95156 1.02004 1.01145 1.21367 0.96259 0.96298 0.99291 1.21781 1.00969 0.95846 1.01289 1.21948 1.01791 0.92200 0.99482 1.20353 1.01669 0.91556 0.79477 0.85969 1.44339 1.22227 1.58486 1.09865 1.17892 0.83260 0.77544 0.80645 1.90991 1.20930 1.50445 1.83871 1.86317 1.46088 1.76665 1.18708 1.21697 0.89461 1.01730 0.81653 1.19560 1.00851 0.94374 0.94985 1.21151 0.98720 0.94078 0.97119 1.21179 0.98417 1.00083 0.94543 1.21250 0.98209 0.94062 0.99329 1.21168 1.00241 0.95434 0.97456 1.21126 0.95986 1.00075 0.93942 1.22646 0.83560 0.84341 0.84532 1.90609 1.39105 1.29046 1.84231 1.83518 1.61711 1.54099 1.14791 1.20678 1.25484 1.15321 0.84471 0.87153 1.24518 0.96825 0.98142 0.93960 1.69597 1.40218 1.39808 1.01209 0.86405 0.81624 0.81807 0.78352 1.19510 1.20782 1.17525 0.92828 0.92372 0.92981 0.87897 0.92691 0.92683 0.93115 0.90677 0.91004 0.74620 0.90125 0.90112 0.85599 0.85687 0.85880 0.85728 0.85670 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.97 37.16 0.33 -1.84 16 2 C -0.11 -1.82 2.74 -90.62 -0.25 -2.07 16 3 C -0.14 -1.92 9.19 37.16 0.34 -1.58 16 4 C -0.12 -1.80 4.44 -26.73 -0.12 -1.92 16 5 C 0.17 3.12 2.52 -69.09 -0.17 2.94 16 6 H 0.12 2.20 5.52 -51.92 -0.29 1.92 16 7 N -0.69 -11.30 4.93 -59.87 -0.30 -11.60 16 8 C 0.65 10.42 8.73 54.06 0.47 10.89 16 9 O -0.57 -10.11 15.74 -19.28 -0.30 -10.42 16 10 O -0.36 -5.05 10.25 -40.33 -0.41 -5.47 16 11 C 0.13 1.43 5.60 36.00 0.20 1.63 16 12 C -0.10 -0.97 5.52 -104.63 -0.58 -1.55 16 13 C -0.09 -0.85 9.70 -39.58 -0.38 -1.24 16 14 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 15 C -0.11 -0.82 10.05 -39.59 -0.40 -1.22 16 16 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 17 C -0.09 -0.83 9.70 -39.58 -0.38 -1.21 16 18 C 0.40 9.11 7.25 36.01 0.26 9.37 16 19 O -0.53 -13.45 15.10 -19.05 -0.29 -13.74 16 20 O -0.23 -5.77 5.79 -20.71 -0.12 -5.89 16 21 C -0.38 -10.93 10.10 30.92 0.31 -10.62 16 22 H 0.11 3.49 7.09 -52.49 -0.37 3.12 16 23 C 0.07 1.94 5.49 -17.53 -0.10 1.85 16 24 N -0.87 -25.11 13.96 55.48 0.77 -24.33 16 25 Si 0.89 20.48 27.96 -169.99 -4.75 15.73 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.25 -5.53 7.11 56.52 0.40 -5.13 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.99 4.63 -51.93 -0.24 1.75 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.42 6.70 7.95 -40.82 -0.32 6.37 16 39 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -32.11 388.42 -7.40 -39.51 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.60 Total: 9.69 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.25 Total: 0.67 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.48 Total: -35.93 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -1.12 Total: -35.51 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.75 Total: 15.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.11 -7.40 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169347856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.791 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds