Wall clock time and date at job start Tue Mar 31 2020 19:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47461 * 2 1 4 4 C 1.53002 * 109.46964 * 239.99779 * 2 1 3 5 5 O 1.45204 * 109.47216 * 119.99724 * 2 1 3 6 6 C 1.34638 * 116.99666 * 60.00195 * 5 2 1 7 7 O 1.21510 * 120.00411 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99764 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00031 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47397 * 179.97438 * 9 8 6 11 11 O 1.45202 * 109.47026 * 65.00005 * 10 9 8 12 12 C 1.34699 * 117.00020 * 180.02562 * 11 10 9 13 13 O 1.21465 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.47770 * 119.99865 * 180.02562 * 12 11 10 15 15 C 1.39960 * 120.03211 * 359.96817 * 14 12 11 16 16 C 1.38318 * 120.35645 * 180.02562 * 15 14 12 17 17 C 1.37762 * 120.41491 * 0.02562 * 16 15 14 18 18 C 1.40756 * 120.05325 * 359.97438 * 17 16 15 19 19 C 1.41434 * 120.18010 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99456 * 24.42865 * 19 18 17 21 21 C 1.39932 * 120.00288 * 204.42927 * 19 18 17 22 22 N 1.30824 * 120.00201 * 17.83811 * 21 19 18 23 23 Si 1.86806 * 119.99927 * 197.83727 * 21 19 18 24 24 H 1.48493 * 109.47184 * 60.00061 * 23 21 19 25 25 H 1.48506 * 109.46886 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47168 * 299.99757 * 23 21 19 27 27 C 1.39055 * 120.02826 * 179.97438 * 14 12 11 28 28 H 1.09002 * 109.47166 * 300.00383 * 1 2 3 29 29 H 1.08999 * 109.47293 * 60.00231 * 1 2 3 30 30 H 1.09003 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47199 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46682 * 300.00077 * 3 2 1 33 33 H 1.08994 * 109.47218 * 59.99927 * 3 2 1 34 34 H 1.09000 * 109.47380 * 299.99531 * 4 2 1 35 35 H 1.08997 * 109.47531 * 60.00540 * 4 2 1 36 36 H 1.09006 * 109.47145 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00268 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47169 * 59.99488 * 9 8 6 39 39 H 1.09000 * 109.47185 * 299.99722 * 9 8 6 40 40 H 1.09004 * 109.46839 * 305.00017 * 10 9 8 41 41 H 1.08996 * 109.47376 * 185.00063 * 10 9 8 42 42 H 1.07996 * 119.82478 * 0.02562 * 15 14 12 43 43 H 1.07999 * 119.79298 * 180.02562 * 16 15 14 44 44 H 1.08002 * 119.97692 * 179.97438 * 17 16 15 45 45 H 0.96997 * 120.00007 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.20489 * 359.69379 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5095 0.5041 8 7 2.0672 -2.6653 2.4172 9 6 1.6731 -4.0665 2.5838 10 6 2.2733 -4.6145 3.8800 11 8 1.6957 -3.9156 5.0142 12 6 2.1209 -4.2811 6.2389 13 8 2.9512 -5.1599 6.3563 14 6 1.5766 -3.6137 7.4397 15 6 0.6196 -2.6014 7.3052 16 6 0.1059 -1.9718 8.4245 17 6 0.5303 -2.3332 9.6843 18 6 1.4920 -3.3491 9.8398 19 6 1.9300 -3.7219 11.1319 20 1 1.2954 -3.5478 11.9882 21 6 3.1855 -4.3164 11.3007 22 7 4.0882 -4.2171 10.3590 23 14 3.5725 -5.2518 12.8707 24 1 2.6183 -6.3794 13.0230 25 1 4.9583 -5.7812 12.8026 26 1 3.4489 -4.3380 14.0346 27 6 2.0148 -3.9909 8.7043 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 2.6268 -2.2365 3.0834 38 1 2.0395 -4.6499 1.7390 39 1 0.5862 -4.1354 2.6287 40 1 3.3530 -4.4646 3.8723 41 1 2.0549 -5.6794 3.9599 42 1 0.2803 -2.3101 6.3221 43 1 -0.6326 -1.1920 8.3102 44 1 0.1247 -1.8367 10.5535 45 1 4.9586 -4.6288 10.4762 46 1 2.7495 -4.7749 8.8133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171339462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:57 Heat of formation + Delta-G solvation = -159.731829 kcal Electronic energy + Delta-G solvation = -28194.553798 eV Core-core repulsion = 24048.880821 eV Total energy + Delta-G solvation = -4145.672977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88327 -39.88996 -37.81876 -37.35240 -36.07160 -34.84123 -34.07445 -33.78899 -30.64862 -29.66856 -29.47066 -27.64314 -27.59436 -25.46032 -24.20612 -22.88179 -21.75748 -21.03562 -20.25572 -19.91767 -18.37376 -17.92058 -16.96836 -16.68694 -16.28771 -16.06980 -15.96923 -15.18132 -14.97938 -14.76343 -14.70389 -14.51424 -13.87603 -13.67547 -13.34556 -13.27922 -12.84028 -12.70107 -12.67791 -12.49414 -12.38832 -12.13228 -12.11201 -11.80978 -11.72860 -11.58113 -11.50518 -11.23347 -11.15501 -10.82050 -10.57947 -10.55088 -10.44496 -10.27334 -10.18154 -9.78594 -9.57734 -9.32314 -9.28064 -7.80231 -7.61102 -6.87776 -4.48621 1.90579 2.03267 2.73078 2.74266 3.03273 3.04391 3.05526 3.10966 3.52344 3.86329 4.00265 4.48571 4.52548 4.53320 4.58243 4.67279 4.97624 5.18279 5.22659 5.27255 5.30210 5.36172 5.45036 5.49021 5.53032 5.62354 5.62809 5.74768 5.75367 5.98708 6.06244 6.08299 6.21082 6.35035 6.39347 6.56351 6.82777 6.88732 6.92091 7.11946 7.25556 7.29041 7.62512 7.69813 7.85522 8.05057 8.25859 8.38762 8.45176 8.71751 8.73794 10.07517 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002153 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.614955 B =13002.059843 C =13571.842374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.652 3.348 7 O -0.573 6.573 8 N -0.706 5.706 9 C 0.143 3.857 10 C 0.051 3.949 11 O -0.355 6.355 12 C 0.513 3.487 13 O -0.516 6.516 14 C -0.116 4.116 15 C -0.193 4.193 16 C -0.103 4.103 17 C -0.201 4.201 18 C 0.095 3.905 19 C -0.459 4.459 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.787 5.787 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.089 4.089 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.412 0.588 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.286 0.714 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 5.451 -17.557 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.405 3.595 7 O -0.463 6.463 8 N -0.366 5.366 9 C 0.020 3.980 10 C -0.024 4.024 11 O -0.273 6.273 12 C 0.361 3.639 13 O -0.406 6.406 14 C -0.117 4.117 15 C -0.213 4.213 16 C -0.122 4.122 17 C -0.221 4.221 18 C 0.093 3.907 19 C -0.488 4.488 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.411 5.411 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.189 1.189 27 C -0.108 4.108 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.247 0.753 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.005 4.909 -18.070 18.832 hybrid contribution 0.635 -0.267 0.850 1.095 sum -1.370 4.642 -17.219 17.886 Atomic orbital electron populations 1.22517 0.93940 1.05117 1.02519 1.22067 0.94445 0.91535 0.82049 1.21866 1.02262 0.92556 1.03171 1.22516 1.01510 1.03502 0.96477 1.86326 1.71494 1.23592 1.46409 1.18033 0.78748 0.80518 0.82180 1.90887 1.41251 1.70546 1.43589 1.44703 1.55595 1.12621 1.23681 1.21436 1.01543 0.79513 0.95479 1.23193 0.98591 0.97397 0.83239 1.86643 1.64392 1.61142 1.15116 1.21892 0.78800 0.80372 0.82882 1.90775 1.32025 1.30870 1.86906 1.18812 1.02297 1.01061 0.89547 1.20548 1.02054 1.01228 0.97491 1.20515 0.99470 0.99212 0.92957 1.21192 1.04704 1.00570 0.95616 1.17542 0.90619 0.89487 0.93099 1.19543 1.00709 1.34800 0.93776 0.89947 1.25966 0.95723 0.94421 0.98467 1.69765 1.04637 1.33166 1.33535 0.86302 0.78185 0.80450 0.81484 1.18681 1.20216 1.18903 1.21654 1.00073 0.99863 0.89229 0.92007 0.91234 0.89354 0.91472 0.90196 0.91312 0.89387 0.91208 0.92222 0.75288 0.89055 0.89796 0.90490 0.89232 0.87912 0.88538 0.88330 0.90332 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 8.37 37.15 0.31 -1.47 16 2 C 0.14 1.34 1.13 -90.62 -0.10 1.24 16 3 C -0.14 -1.05 8.85 37.16 0.33 -0.72 16 4 C -0.18 -1.68 8.37 37.16 0.31 -1.36 16 5 O -0.36 -4.44 9.94 -40.32 -0.40 -4.84 16 6 C 0.65 8.50 8.06 54.05 0.44 8.94 16 7 O -0.57 -8.28 11.88 -19.28 -0.23 -8.51 16 8 N -0.71 -8.33 5.51 -65.28 -0.36 -8.69 16 9 C 0.14 1.54 6.07 -4.04 -0.02 1.52 16 10 C 0.05 0.64 5.60 37.16 0.21 0.84 16 11 O -0.36 -6.01 9.41 -40.49 -0.38 -6.39 16 12 C 0.51 10.84 7.90 34.63 0.27 11.11 16 13 O -0.52 -11.91 16.12 -19.24 -0.31 -12.22 16 14 C -0.12 -2.69 5.87 -105.05 -0.62 -3.31 16 15 C -0.19 -4.13 9.62 -38.91 -0.37 -4.50 16 16 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 17 C -0.20 -4.65 9.78 -38.80 -0.38 -5.02 16 18 C 0.10 2.44 5.57 -106.87 -0.60 1.84 16 19 C -0.46 -11.71 9.05 -37.73 -0.34 -12.05 16 20 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 21 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 22 N -0.79 -20.18 10.96 55.55 0.61 -19.57 16 23 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 27 C -0.09 -2.29 8.23 -38.42 -0.32 -2.60 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.41 4.65 8.58 -40.82 -0.35 4.30 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.10 1.97 7.59 -52.49 -0.40 1.58 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.29 6.73 8.30 -40.82 -0.34 6.40 16 46 H 0.14 3.72 5.75 -52.49 -0.30 3.42 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -29.48 387.91 -8.33 -37.81 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.71 Total: 9.75 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.37 Total: -6.42 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: 0.25 Total: -28.25 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.32 Total: -31.96 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.48 -8.33 -37.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171339462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.924 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds