Wall clock time and date at job start Tue Mar 31 2020 19:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47461 * 2 1 4 4 C 1.53002 * 109.46964 * 239.99779 * 2 1 3 5 5 O 1.45204 * 109.47216 * 119.99724 * 2 1 3 6 6 C 1.34638 * 116.99666 * 60.00195 * 5 2 1 7 7 O 1.21510 * 120.00411 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99764 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00031 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47397 * 179.97438 * 9 8 6 11 11 O 1.45202 * 109.47026 * 65.00005 * 10 9 8 12 12 C 1.34699 * 117.00020 * 180.02562 * 11 10 9 13 13 O 1.21465 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.47770 * 119.99865 * 180.02562 * 12 11 10 15 15 C 1.39960 * 120.03211 * 359.96817 * 14 12 11 16 16 C 1.38318 * 120.35645 * 180.02562 * 15 14 12 17 17 C 1.37762 * 120.41491 * 0.02562 * 16 15 14 18 18 C 1.40756 * 120.05325 * 359.97438 * 17 16 15 19 19 C 1.41434 * 120.18010 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99456 * 24.42865 * 19 18 17 21 21 C 1.39932 * 120.00288 * 204.42927 * 19 18 17 22 22 N 1.30824 * 120.00201 * 17.83811 * 21 19 18 23 23 Si 1.86806 * 119.99927 * 197.83727 * 21 19 18 24 24 H 1.48493 * 109.47184 * 60.00061 * 23 21 19 25 25 H 1.48506 * 109.46886 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47168 * 299.99757 * 23 21 19 27 27 C 1.39055 * 120.02826 * 179.97438 * 14 12 11 28 28 H 1.09002 * 109.47166 * 300.00383 * 1 2 3 29 29 H 1.08999 * 109.47293 * 60.00231 * 1 2 3 30 30 H 1.09003 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47199 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.46682 * 300.00077 * 3 2 1 33 33 H 1.08994 * 109.47218 * 59.99927 * 3 2 1 34 34 H 1.09000 * 109.47380 * 299.99531 * 4 2 1 35 35 H 1.08997 * 109.47531 * 60.00540 * 4 2 1 36 36 H 1.09006 * 109.47145 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00268 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47169 * 59.99488 * 9 8 6 39 39 H 1.09000 * 109.47185 * 299.99722 * 9 8 6 40 40 H 1.09004 * 109.46839 * 305.00017 * 10 9 8 41 41 H 1.08996 * 109.47376 * 185.00063 * 10 9 8 42 42 H 1.07996 * 119.82478 * 0.02562 * 15 14 12 43 43 H 1.07999 * 119.79298 * 180.02562 * 16 15 14 44 44 H 1.08002 * 119.97692 * 179.97438 * 17 16 15 45 45 H 0.96997 * 120.00007 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.20489 * 359.69379 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5095 0.5041 8 7 2.0672 -2.6653 2.4172 9 6 1.6731 -4.0665 2.5838 10 6 2.2733 -4.6145 3.8800 11 8 1.6957 -3.9156 5.0142 12 6 2.1209 -4.2811 6.2389 13 8 2.9512 -5.1599 6.3563 14 6 1.5766 -3.6137 7.4397 15 6 0.6196 -2.6014 7.3052 16 6 0.1059 -1.9718 8.4245 17 6 0.5303 -2.3332 9.6843 18 6 1.4920 -3.3491 9.8398 19 6 1.9300 -3.7219 11.1319 20 1 1.2954 -3.5478 11.9882 21 6 3.1855 -4.3164 11.3007 22 7 4.0882 -4.2171 10.3590 23 14 3.5725 -5.2518 12.8707 24 1 2.6183 -6.3794 13.0230 25 1 4.9583 -5.7812 12.8026 26 1 3.4489 -4.3380 14.0346 27 6 2.0148 -3.9909 8.7043 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 2.6268 -2.2365 3.0834 38 1 2.0395 -4.6499 1.7390 39 1 0.5862 -4.1354 2.6287 40 1 3.3530 -4.4646 3.8723 41 1 2.0549 -5.6794 3.9599 42 1 0.2803 -2.3101 6.3221 43 1 -0.6326 -1.1920 8.3102 44 1 0.1247 -1.8367 10.5535 45 1 4.9586 -4.6288 10.4762 46 1 2.7495 -4.7749 8.8133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171339462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:56 Heat of formation + Delta-G solvation = -176.152680 kcal Electronic energy + Delta-G solvation = -28195.265860 eV Core-core repulsion = 24048.880821 eV Total energy + Delta-G solvation = -4146.385039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83275 -41.42797 -39.26825 -38.58835 -37.51215 -35.93652 -35.60493 -34.88731 -32.32360 -31.37683 -30.74375 -28.32880 -28.27138 -27.29658 -25.56534 -24.14898 -22.88768 -22.72036 -21.56477 -21.12175 -19.67998 -19.27455 -18.27292 -17.91554 -17.67739 -17.32404 -17.19939 -16.71679 -16.47232 -16.10975 -15.58757 -15.55197 -15.22644 -15.03540 -14.66357 -14.44784 -14.32964 -14.05774 -13.92438 -13.48545 -13.33596 -13.11926 -12.99497 -12.90651 -12.85757 -12.83961 -12.80653 -12.56160 -12.43518 -12.30240 -12.22458 -12.03688 -11.76472 -11.55546 -11.36972 -11.29139 -11.11638 -11.08027 -10.28070 -9.61411 -9.44443 -8.68820 -6.39541 0.13706 0.97378 1.15707 1.38153 1.47233 1.51323 1.63092 1.75488 1.80850 2.19223 2.72355 3.14336 3.54964 3.63251 3.77788 3.82930 3.91663 3.97687 3.98992 4.28924 4.40618 4.49728 4.57324 4.63074 4.64786 4.64840 4.79733 4.80004 4.86636 4.88259 4.90502 5.05055 5.06502 5.13267 5.20971 5.26158 5.28422 5.31259 5.37482 5.45118 5.57068 5.81606 5.89890 6.01190 6.23354 6.33123 6.52904 6.80928 6.86742 6.88970 7.29985 8.28462 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002153 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.614955 B =13002.059843 C =13571.842374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.372 6.372 6 C 0.649 3.351 7 O -0.590 6.590 8 N -0.705 5.705 9 C 0.151 3.849 10 C 0.048 3.952 11 O -0.348 6.348 12 C 0.520 3.480 13 O -0.543 6.543 14 C -0.128 4.128 15 C -0.180 4.180 16 C -0.100 4.100 17 C -0.205 4.205 18 C 0.065 3.935 19 C -0.494 4.494 20 H 0.087 0.913 21 C 0.031 3.969 22 N -0.825 5.825 23 Si 0.983 3.017 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.254 1.254 27 C -0.122 4.122 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.414 0.586 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.113 0.887 45 H 0.288 0.712 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 6.693 -18.752 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.287 6.287 6 C 0.402 3.598 7 O -0.481 6.481 8 N -0.366 5.366 9 C 0.029 3.971 10 C -0.025 4.025 11 O -0.265 6.265 12 C 0.367 3.633 13 O -0.435 6.435 14 C -0.129 4.129 15 C -0.199 4.199 16 C -0.118 4.118 17 C -0.224 4.224 18 C 0.062 3.938 19 C -0.523 4.523 20 H 0.105 0.895 21 C -0.184 4.184 22 N -0.450 5.450 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.177 1.177 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.131 0.869 45 H 0.099 0.901 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.865 6.178 -19.285 20.452 hybrid contribution 0.795 -0.550 1.004 1.394 sum -2.071 5.628 -18.282 19.240 Atomic orbital electron populations 1.22473 0.93942 1.03742 1.03532 1.22447 0.94658 0.92700 0.81549 1.21897 1.02397 0.90853 1.04274 1.22463 1.01592 1.02280 0.97165 1.86337 1.71602 1.23150 1.47617 1.18157 0.78622 0.80836 0.82166 1.90884 1.42038 1.70986 1.44215 1.44765 1.55409 1.12913 1.23475 1.21453 1.01328 0.79386 0.94925 1.23526 0.99028 0.97913 0.82069 1.86591 1.64051 1.61201 1.14608 1.21551 0.78222 0.79715 0.83778 1.90758 1.33169 1.31986 1.87559 1.19072 1.02540 1.01576 0.89727 1.20919 1.00384 0.99587 0.99007 1.20950 0.99510 0.99508 0.91839 1.21487 1.03804 0.99802 0.97325 1.17907 0.91835 0.90595 0.93414 1.19828 1.01629 1.36755 0.94090 0.89541 1.26836 0.95172 0.94684 1.01729 1.69853 1.05116 1.34381 1.35666 0.85237 0.77975 0.78999 0.77482 1.18472 1.19665 1.17746 1.21468 1.01326 1.00652 0.90773 0.92299 0.88922 0.91808 0.91288 0.87755 0.91538 0.91734 0.88979 0.92002 0.75051 0.86806 0.90005 0.89871 0.88069 0.85131 0.84424 0.86855 0.90108 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.37 71.98 0.60 -2.63 16 2 C 0.12 2.23 1.13 -10.79 -0.01 2.21 16 3 C -0.14 -1.71 8.85 71.98 0.64 -1.08 16 4 C -0.18 -2.99 8.37 71.98 0.60 -2.39 16 5 O -0.37 -8.71 9.94 -55.47 -0.55 -9.26 16 6 C 0.65 16.31 8.06 129.79 1.05 17.35 16 7 O -0.59 -16.68 11.88 19.81 0.24 -16.45 16 8 N -0.71 -15.70 5.51 -590.84 -3.26 -18.95 16 9 C 0.15 3.00 6.07 86.38 0.52 3.52 16 10 C 0.05 1.15 5.60 71.98 0.40 1.55 16 11 O -0.35 -11.31 9.41 -56.08 -0.53 -11.83 16 12 C 0.52 21.95 7.90 70.34 0.56 22.50 16 13 O -0.54 -25.56 16.12 19.95 0.32 -25.24 16 14 C -0.13 -5.97 5.87 -20.14 -0.12 -6.08 16 15 C -0.18 -7.32 9.62 22.71 0.22 -7.10 16 16 C -0.10 -3.98 10.01 22.18 0.22 -3.76 16 17 C -0.20 -9.32 9.78 22.77 0.22 -9.09 16 18 C 0.06 3.41 5.57 -21.32 -0.12 3.29 16 19 C -0.49 -25.95 9.05 23.47 0.21 -25.73 16 20 H 0.09 4.27 7.91 -2.91 -0.02 4.24 16 21 C 0.03 1.56 5.14 85.25 0.44 2.00 16 22 N -0.82 -44.16 10.96 21.82 0.24 -43.92 16 23 Si 0.98 38.15 29.60 68.60 2.03 40.18 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 25 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 26 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 27 C -0.12 -6.55 8.23 23.02 0.19 -6.36 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.49 5.88 -2.39 -0.01 1.47 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.42 5.88 -2.39 -0.01 1.40 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.41 8.83 8.58 -92.71 -0.80 8.04 16 38 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 41 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.13 4.57 7.59 -2.91 -0.02 4.55 16 43 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 44 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 45 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 46 H 0.11 6.24 5.75 -2.91 -0.02 6.23 16 Total: -1.00 -66.18 387.91 4.32 -61.86 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.21 Total: 35.40 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.63 Total: -11.79 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -3.02 Total: -62.88 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -0.52 Total: -62.78 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -66.18 4.32 -61.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171339462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.290 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds