Wall clock time and date at job start Tue Mar 31 2020 18:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34229 * 117.00069 * 2 1 4 4 O 1.20824 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99989 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47105 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47528 * 59.99167 * 6 5 3 8 8 C 1.53002 * 109.46442 * 299.99268 * 6 5 3 9 9 N 1.46495 * 109.47156 * 179.97438 * 6 5 3 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 6 5 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 6 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 6 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09006 * 109.47141 * 60.00858 * 1 2 3 29 29 H 1.09002 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47822 * 300.00757 * 1 2 3 31 31 H 1.08998 * 109.47596 * 59.98963 * 5 3 2 32 32 H 1.09005 * 109.46667 * 299.99151 * 5 3 2 33 33 H 1.08995 * 109.46961 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47288 * 300.00206 * 7 6 5 35 35 H 1.09005 * 109.47091 * 60.00247 * 7 6 5 36 36 H 1.09003 * 109.47457 * 300.00016 * 8 6 5 37 37 H 1.08995 * 109.47293 * 60.00456 * 8 6 5 38 38 H 1.09004 * 109.46769 * 179.97438 * 8 6 5 39 39 H 0.97005 * 120.00223 * 359.97438 * 9 6 5 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 3.4534 3.4361 1.2480 8 6 3.4527 3.4352 -1.2505 9 7 5.4630 2.8187 -0.0011 10 6 6.0750 4.0196 -0.0020 11 8 5.4144 5.0368 -0.0024 12 6 7.5799 4.0985 -0.0014 13 6 8.0072 5.5436 -0.0020 14 6 8.2023 6.2060 1.1962 15 6 8.5943 7.5302 1.1991 16 6 8.7921 8.1968 -0.0032 17 8 9.1780 9.4983 -0.0037 18 6 9.4631 10.0527 1.1918 19 1 9.3019 9.4909 2.0999 20 6 9.9634 11.3444 1.2554 21 7 10.1603 12.0287 0.1492 22 14 10.3591 12.1122 2.9116 23 1 11.7687 11.8142 3.2713 24 1 10.1685 13.5829 2.8336 25 1 9.4547 11.5501 3.9467 26 6 8.5892 7.5308 -1.2048 27 6 8.2027 6.2049 -1.2008 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 3.9557 0.7808 -0.8907 32 1 3.9563 0.7806 0.8893 33 1 3.7621 4.4814 1.2473 34 1 2.3650 3.3791 1.2483 35 1 3.8434 2.9423 2.1381 36 1 3.8421 2.9407 -2.1404 37 1 2.3642 3.3781 -1.2501 38 1 3.7613 4.4806 -1.2507 39 1 5.9914 2.0052 -0.0003 40 1 7.9700 3.6035 -0.8907 41 1 7.9693 3.6053 0.8893 42 1 8.0488 5.6870 2.1308 43 1 8.7469 8.0468 2.1351 44 1 10.5099 12.9324 0.1937 45 1 8.7379 8.0477 -2.1412 46 1 8.0491 5.6850 -2.1349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172777506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:52 Heat of formation + Delta-G solvation = -119.914003 kcal Electronic energy + Delta-G solvation = -28266.317595 eV Core-core repulsion = 24122.371249 eV Total energy + Delta-G solvation = -4143.946347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25530 -39.98118 -38.85894 -37.49039 -36.55656 -35.78080 -32.64666 -32.21302 -30.95834 -30.08493 -29.54573 -27.40397 -27.33636 -26.56460 -25.07236 -22.63899 -21.90803 -21.20230 -20.11531 -19.65763 -18.10750 -17.91952 -17.25697 -16.99768 -16.86288 -16.64241 -15.69478 -15.28542 -14.71542 -14.59229 -14.39781 -14.26753 -13.93605 -13.84642 -13.73363 -13.55142 -13.37830 -13.34277 -12.64811 -12.53354 -12.51690 -12.27370 -12.03429 -11.97051 -11.73234 -11.50636 -11.35658 -11.20389 -11.18914 -10.99938 -10.78788 -10.71924 -10.63211 -10.56327 -10.38308 -9.40567 -9.27035 -9.12512 -8.76755 -8.08383 -7.09915 -6.39600 -3.97986 1.75819 2.10550 2.31659 2.36981 2.82787 3.15604 3.17040 3.22049 3.29571 4.01478 4.07019 4.47364 4.47652 4.60677 4.66282 4.75093 4.83186 4.99174 5.09529 5.11591 5.16799 5.21361 5.31109 5.35667 5.39122 5.66034 5.71217 5.77455 5.79611 5.81853 5.84083 5.91348 5.99754 6.28002 6.37164 6.38733 6.48398 6.51900 6.76904 6.98059 7.11618 7.30189 7.33124 7.43488 7.49983 7.53665 7.90714 8.05880 8.39998 9.06175 9.77477 10.78622 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.001944 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.770942 B =14399.209896 C =14738.313696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.489 6.489 5 C -0.119 4.119 6 C 0.190 3.810 7 C -0.176 4.176 8 C -0.176 4.176 9 N -0.736 5.736 10 C 0.513 3.487 11 O -0.510 6.510 12 C -0.080 4.080 13 C -0.169 4.169 14 C -0.056 4.056 15 C -0.233 4.233 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.396 0.604 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.116 0.884 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -27.405 0.183 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.308 3.692 4 O -0.376 6.376 5 C -0.157 4.157 6 C 0.104 3.896 7 C -0.234 4.234 8 C -0.234 4.234 9 N -0.391 5.391 10 C 0.300 3.700 11 O -0.384 6.384 12 C -0.120 4.120 13 C -0.170 4.170 14 C -0.075 4.075 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.211 4.211 27 C -0.078 4.078 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.230 0.770 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.619 -25.919 -0.061 29.279 hybrid contribution 0.237 -0.112 0.894 0.931 sum -13.381 -26.031 0.832 29.281 Atomic orbital electron populations 1.23291 0.75979 1.03785 1.02793 1.86491 1.23714 1.33380 1.84211 1.23343 0.91797 0.81398 0.72644 1.90629 1.67169 1.35672 1.44155 1.21614 0.88677 0.99069 1.06339 1.19926 0.80241 0.91684 0.97753 1.22466 1.02783 1.03211 0.94947 1.22466 1.02779 1.03209 0.94931 1.46180 1.05989 1.08853 1.78042 1.20976 0.90865 0.82713 0.75441 1.90700 1.66436 1.34585 1.46653 1.20413 0.90952 0.96819 1.03775 1.18619 1.10707 0.94032 0.93666 1.20498 0.96838 0.93967 0.96162 1.21101 1.10202 0.95506 0.98371 1.19388 0.91917 0.85122 0.93281 1.83976 1.73056 1.18272 1.32931 1.21325 1.43976 0.98203 0.83158 0.89103 1.25284 0.96444 0.95625 0.99228 1.70040 1.41766 1.11128 1.26937 0.85717 0.79021 0.78457 0.80257 1.19920 1.20295 1.19222 1.20151 1.10172 0.94588 0.96192 1.20392 0.97515 0.93549 0.96307 0.91716 0.88040 0.91724 0.87040 0.87048 0.89826 0.89883 0.93344 0.93335 0.89883 0.89823 0.77027 0.89049 0.89091 0.87884 0.85642 0.92091 0.86601 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.55 101.05 1.07 1.25 16 2 O -0.36 -2.63 10.56 -39.26 -0.41 -3.04 16 3 C 0.47 3.89 7.37 36.01 0.27 4.16 16 4 O -0.49 -5.43 11.10 -18.75 -0.21 -5.64 16 5 C -0.12 -0.74 4.99 -27.88 -0.14 -0.88 16 6 C 0.19 1.84 0.80 -131.82 -0.11 1.74 16 7 C -0.18 -2.07 8.10 37.16 0.30 -1.77 16 8 C -0.18 -2.06 8.10 37.16 0.30 -1.75 16 9 N -0.74 -6.66 5.10 -47.61 -0.24 -6.90 16 10 C 0.51 6.74 7.24 -10.98 -0.08 6.66 16 11 O -0.51 -9.16 12.24 5.55 0.07 -9.09 16 12 C -0.08 -0.96 5.83 -29.04 -0.17 -1.13 16 13 C -0.17 -2.94 4.38 -104.58 -0.46 -3.39 16 14 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 15 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 16 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 17 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 18 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.86 13.67 55.48 0.76 -25.10 16 22 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 C -0.19 -4.25 9.99 -39.39 -0.39 -4.65 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 31 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 34 H 0.08 1.01 5.52 -51.93 -0.29 0.73 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.01 5.52 -51.93 -0.29 0.72 16 38 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 39 H 0.40 2.11 8.47 -40.82 -0.35 1.76 16 40 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -36.05 379.19 -6.28 -42.33 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.33 Total: 5.67 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.60 Total: -14.64 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.52 Total: -32.01 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.55 Total: -23.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.05 -6.28 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172777506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.588 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds