Wall clock time and date at job start Tue Mar 31 2020 18:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34229 * 117.00069 * 2 1 4 4 O 1.20824 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99989 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47105 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47528 * 59.99167 * 6 5 3 8 8 C 1.53002 * 109.46442 * 299.99268 * 6 5 3 9 9 N 1.46495 * 109.47156 * 179.97438 * 6 5 3 10 10 C 1.34775 * 120.00172 * 179.97438 * 9 6 5 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 6 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 6 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.09006 * 109.47141 * 60.00858 * 1 2 3 29 29 H 1.09002 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47822 * 300.00757 * 1 2 3 31 31 H 1.08998 * 109.47596 * 59.98963 * 5 3 2 32 32 H 1.09005 * 109.46667 * 299.99151 * 5 3 2 33 33 H 1.08995 * 109.46961 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47288 * 300.00206 * 7 6 5 35 35 H 1.09005 * 109.47091 * 60.00247 * 7 6 5 36 36 H 1.09003 * 109.47457 * 300.00016 * 8 6 5 37 37 H 1.08995 * 109.47293 * 60.00456 * 8 6 5 38 38 H 1.09004 * 109.46769 * 179.97438 * 8 6 5 39 39 H 0.97005 * 120.00223 * 359.97438 * 9 6 5 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 3.4534 3.4361 1.2480 8 6 3.4527 3.4352 -1.2505 9 7 5.4630 2.8187 -0.0011 10 6 6.0750 4.0196 -0.0020 11 8 5.4144 5.0368 -0.0024 12 6 7.5799 4.0985 -0.0014 13 6 8.0072 5.5436 -0.0020 14 6 8.2023 6.2060 1.1962 15 6 8.5943 7.5302 1.1991 16 6 8.7921 8.1968 -0.0032 17 8 9.1780 9.4983 -0.0037 18 6 9.4631 10.0527 1.1918 19 1 9.3019 9.4909 2.0999 20 6 9.9634 11.3444 1.2554 21 7 10.1603 12.0287 0.1492 22 14 10.3591 12.1122 2.9116 23 1 11.7687 11.8142 3.2713 24 1 10.1685 13.5829 2.8336 25 1 9.4547 11.5501 3.9467 26 6 8.5892 7.5308 -1.2048 27 6 8.2027 6.2049 -1.2008 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 3.9557 0.7808 -0.8907 32 1 3.9563 0.7806 0.8893 33 1 3.7621 4.4814 1.2473 34 1 2.3650 3.3791 1.2483 35 1 3.8434 2.9423 2.1381 36 1 3.8421 2.9407 -2.1404 37 1 2.3642 3.3781 -1.2501 38 1 3.7613 4.4806 -1.2507 39 1 5.9914 2.0052 -0.0003 40 1 7.9700 3.6035 -0.8907 41 1 7.9693 3.6053 0.8893 42 1 8.0488 5.6870 2.1308 43 1 8.7469 8.0468 2.1351 44 1 10.5099 12.9324 0.1937 45 1 8.7379 8.0477 -2.1412 46 1 8.0491 5.6850 -2.1349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172777506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:51 Heat of formation + Delta-G solvation = -145.264281 kcal Electronic energy + Delta-G solvation = -28267.416866 eV Core-core repulsion = 24122.371249 eV Total energy + Delta-G solvation = -4145.045617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93762 -41.05779 -40.47103 -38.52436 -37.88326 -36.72896 -34.39604 -33.51444 -32.22258 -31.74610 -30.22497 -28.26465 -28.12777 -27.88818 -26.94675 -23.62050 -23.55818 -22.33532 -21.24854 -20.55341 -19.82986 -18.85244 -18.70455 -18.08150 -17.56870 -17.27029 -16.73778 -16.57499 -16.29163 -15.87279 -15.76431 -15.51295 -15.26539 -15.06289 -14.82162 -14.63043 -14.48258 -14.36257 -14.24176 -14.07455 -13.59845 -13.10343 -12.98041 -12.96608 -12.94021 -12.65669 -12.53048 -12.44531 -12.27854 -12.24458 -12.15067 -12.10942 -12.08273 -11.64191 -11.36109 -11.16824 -10.80566 -10.45358 -10.01969 -9.74010 -8.87446 -8.47028 -6.15138 0.63695 0.69731 1.17333 1.33509 1.43180 1.51540 1.59904 1.84193 2.17806 2.45356 2.87030 3.19961 3.42360 3.53600 3.87458 3.88832 3.93204 4.08647 4.16244 4.20546 4.27087 4.32626 4.35112 4.53910 4.54109 4.60091 4.61886 4.74111 4.77479 4.82609 4.83258 4.87703 4.93078 4.94366 5.12441 5.15939 5.29248 5.33108 5.40091 5.52259 5.59285 5.68920 5.73529 5.80997 6.03614 6.26311 6.73396 6.79314 6.97448 7.50572 7.79554 8.76530 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.001944 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.770942 B =14399.209896 C =14738.313696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.526 6.526 5 C -0.110 4.110 6 C 0.192 3.808 7 C -0.172 4.172 8 C -0.172 4.172 9 N -0.710 5.710 10 C 0.512 3.488 11 O -0.568 6.568 12 C -0.077 4.077 13 C -0.142 4.142 14 C -0.060 4.060 15 C -0.245 4.245 16 C 0.110 3.890 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.208 4.208 27 C -0.057 4.057 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.421 0.579 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.115 0.885 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.017 -32.637 1.256 35.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.416 6.416 5 C -0.147 4.147 6 C 0.105 3.895 7 C -0.230 4.230 8 C -0.230 4.230 9 N -0.366 5.366 10 C 0.300 3.700 11 O -0.446 6.446 12 C -0.116 4.116 13 C -0.143 4.143 14 C -0.078 4.078 15 C -0.265 4.265 16 C 0.060 3.940 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.227 4.227 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.259 0.741 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.628 -31.290 1.005 34.144 hybrid contribution 0.038 1.126 0.455 1.214 sum -13.590 -30.164 1.460 33.116 Atomic orbital electron populations 1.23511 0.75000 1.05583 1.02372 1.86485 1.24725 1.32684 1.83791 1.23798 0.92693 0.81139 0.71582 1.90636 1.68111 1.36874 1.45948 1.21604 0.87204 0.96428 1.09452 1.19811 0.80307 0.93818 0.95528 1.22384 1.02408 1.01296 0.96931 1.22382 1.02391 1.01313 0.96896 1.45841 1.05856 1.08757 1.76098 1.21108 0.91124 0.82984 0.74769 1.90734 1.67591 1.36772 1.49459 1.20545 0.90259 0.93097 1.07748 1.19279 1.06005 0.96815 0.92235 1.20938 0.95654 0.92549 0.98685 1.21228 1.10858 0.97266 0.97108 1.19951 0.93920 0.84668 0.95427 1.83934 1.76099 1.20662 1.33532 1.21818 1.44533 0.99025 0.83631 0.88301 1.26624 0.95947 0.95774 1.03870 1.70190 1.44185 1.11800 1.29832 0.84571 0.79403 0.77386 0.74719 1.18464 1.19530 1.17887 1.20445 1.10759 0.96368 0.95165 1.20882 0.95807 0.92031 0.98818 0.92184 0.85146 0.92207 0.83809 0.83858 0.93704 0.90832 0.91708 0.91633 0.90849 0.93668 0.74052 0.84990 0.85243 0.84405 0.86674 0.91861 0.87201 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.55 113.37 1.20 1.43 16 2 O -0.36 -4.21 10.56 -51.41 -0.54 -4.75 16 3 C 0.46 6.54 7.37 71.24 0.53 7.07 16 4 O -0.53 -11.26 11.10 21.97 0.24 -11.02 16 5 C -0.11 -0.86 4.99 29.85 0.15 -0.71 16 6 C 0.19 3.14 0.80 3.60 0.00 3.14 16 7 C -0.17 -3.85 8.10 71.98 0.58 -3.26 16 8 C -0.17 -3.81 8.10 71.98 0.58 -3.22 16 9 N -0.71 -9.43 5.10 -422.92 -2.16 -11.59 16 10 C 0.51 11.48 7.24 87.66 0.63 12.11 16 11 O -0.57 -19.71 12.24 -3.05 -0.04 -19.75 16 12 C -0.08 -1.41 5.83 29.10 0.17 -1.24 16 13 C -0.14 -4.48 4.38 -19.84 -0.09 -4.57 16 14 C -0.06 -2.19 9.69 22.25 0.22 -1.98 16 15 C -0.25 -11.47 9.17 22.39 0.21 -11.27 16 16 C 0.11 5.89 6.65 22.58 0.15 6.04 16 17 O -0.24 -14.99 9.76 -22.72 -0.22 -15.21 16 18 C -0.41 -25.32 9.49 67.92 0.64 -24.67 16 19 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 20 C -0.03 -1.48 5.49 84.84 0.47 -1.02 16 21 N -0.92 -58.57 13.67 21.62 0.30 -58.27 16 22 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 26 C -0.21 -9.54 9.99 22.39 0.22 -9.31 16 27 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 28 H 0.06 0.56 8.13 -2.38 -0.02 0.54 16 29 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 31 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.14 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.04 1.37 6.17 -2.39 -0.01 1.35 16 34 H 0.07 1.79 5.52 -2.39 -0.01 1.78 16 35 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.77 5.52 -2.39 -0.01 1.76 16 38 H 0.04 1.37 6.17 -2.38 -0.01 1.35 16 39 H 0.42 1.60 8.47 -92.70 -0.79 0.81 16 40 H 0.13 1.51 8.08 -2.39 -0.02 1.49 16 41 H 0.13 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 43 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 44 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 45 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 46 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -89.98 379.19 5.72 -84.27 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.23 Total: 23.01 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 5.88 Total: -33.28 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -1.86 Total: -69.87 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.56 Total: -50.73 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -89.98 5.72 -84.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172777506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.998 kcal (2) G-P(sol) polarization free energy of solvation -89.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds