Wall clock time and date at job start Tue Mar 31 2020 19:30:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53003 * 109.46716 * 2 1
4 4 H 1.09003 * 109.47185 * 55.18090 * 3 2 1
5 5 O 1.42896 * 109.47141 * 295.17825 * 3 2 1
6 6 C 1.35902 * 116.99710 * 92.84191 * 5 3 2
7 7 C 1.38753 * 120.05760 * 1.59456 * 6 5 3
8 8 C 1.38124 * 119.94181 * 179.70196 * 7 6 5
9 9 C 1.38281 * 120.05498 * 0.59039 * 8 7 6
10 10 C 1.38244 * 120.11498 * 359.69158 * 9 8 7
11 11 C 1.38168 * 120.05350 * 0.02562 * 10 9 8
12 12 C 1.50699 * 120.02441 * 180.02562 * 11 10 9
13 13 C 1.50704 * 109.46715 * 175.18249 * 3 2 1
14 14 O 1.21287 * 120.00213 * 103.43118 * 13 3 2
15 15 N 1.34775 * 119.99678 * 283.42584 * 13 3 2
16 16 C 1.37100 * 120.00446 * 354.39306 * 15 13 3
17 17 H 1.08002 * 119.99897 * 39.83259 * 16 15 13
18 18 C 1.38954 * 120.00072 * 219.84605 * 16 15 13
19 19 N 1.31410 * 119.99711 * 209.93140 * 18 16 15
20 20 Si 1.86798 * 120.00103 * 29.92801 * 18 16 15
21 21 H 1.48498 * 109.47025 * 94.16686 * 20 18 16
22 22 H 1.48504 * 109.47171 * 214.16432 * 20 18 16
23 23 H 1.48499 * 109.47033 * 334.16449 * 20 18 16
24 24 C 1.46506 * 119.99798 * 174.39069 * 15 13 3
25 25 C 1.50698 * 109.46975 * 273.96593 * 24 15 13
26 26 O 1.20822 * 119.99994 * 5.27338 * 25 24 15
27 27 O 1.34235 * 119.99754 * 185.27703 * 25 24 15
28 28 C 1.45201 * 116.99673 * 180.02562 * 27 25 24
29 29 H 1.08999 * 109.46916 * 299.99651 * 1 2 3
30 30 H 1.08993 * 109.46859 * 60.00139 * 1 2 3
31 31 H 1.09003 * 109.46854 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47108 * 239.99839 * 2 1 3
33 33 H 1.09004 * 109.47359 * 120.00010 * 2 1 3
34 34 H 1.08000 * 120.02346 * 359.97438 * 7 6 5
35 35 H 1.08004 * 119.96978 * 180.30178 * 8 7 6
36 36 H 1.08004 * 119.94666 * 179.70119 * 9 8 7
37 37 H 1.08004 * 119.97289 * 179.97438 * 10 9 8
38 38 H 1.09007 * 109.47299 * 269.97511 * 12 11 10
39 39 H 1.08997 * 109.47838 * 29.97899 * 12 11 10
40 40 H 1.08998 * 109.47044 * 149.98355 * 12 11 10
41 41 H 0.96999 * 120.00213 * 179.97438 * 19 18 16
42 42 H 1.08993 * 109.47049 * 33.96976 * 24 15 13
43 43 H 1.09004 * 109.46957 * 153.96483 * 24 15 13
44 44 H 1.08996 * 109.47257 * 299.99562 * 28 27 25
45 45 H 1.08999 * 109.47085 * 59.99984 * 28 27 25
46 46 H 1.09008 * 109.46861 * 179.97438 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6078 1.9807 0.8437
5 8 1.6583 2.0827 -1.2192
6 6 0.4885 2.7743 -1.2130
7 6 -0.2600 2.8634 -0.0480
8 6 -1.4456 3.5721 -0.0428
9 6 -1.8927 4.1824 -1.2002
10 6 -1.1518 4.0903 -2.3637
11 6 0.0377 3.3874 -2.3727
12 6 0.8452 3.2879 -3.6412
13 6 3.5423 1.4442 0.1193
14 8 4.2280 1.6602 -0.8575
15 7 4.1237 1.2059 1.3116
16 6 3.3518 1.0760 2.4371
17 1 2.4139 0.5426 2.3901
18 6 3.7760 1.6308 3.6384
19 7 3.4301 1.0744 4.7775
20 14 4.8379 3.1676 3.6340
21 1 3.9734 4.3670 3.7734
22 1 5.7940 3.1119 4.7689
23 1 5.5904 3.2456 2.3562
24 6 5.5809 1.0855 1.4048
25 6 5.9874 -0.3354 1.1102
26 8 5.1583 -1.1399 0.7563
27 8 7.2705 -0.7073 1.2410
28 6 7.5897 -2.0914 0.9397
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8934 -0.5138 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 0.0863 2.3826 0.8549
35 1 -2.0261 3.6458 0.8650
36 1 -2.8224 4.7321 -1.1954
37 1 -1.5035 4.5674 -3.2665
38 1 0.5324 2.4076 -4.2030
39 1 0.6842 4.1806 -4.2455
40 1 1.9031 3.2032 -3.3928
41 1 3.7265 1.4615 5.6161
42 1 6.0477 1.7543 0.6819
43 1 5.9041 1.3548 2.4104
44 1 7.0258 -2.7469 1.6032
45 1 7.3260 -2.3080 -0.0954
46 1 8.6571 -2.2580 1.0849
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000175888340.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:30:56
Heat of formation + Delta-G solvation = -130.175838 kcal
Electronic energy + Delta-G solvation = -30475.512475 eV
Core-core repulsion = 26331.121142 eV
Total energy + Delta-G solvation = -4144.391333 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.161 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.00292 -41.43682 -40.29792 -38.40401 -37.52652 -36.79989 -34.83496 -34.10742
-33.35447 -31.24634 -30.71917 -28.71781 -27.79676 -27.47871 -26.54710 -24.08376
-22.95679 -22.41741 -22.11809 -20.90657 -19.60805 -19.13042 -18.92767 -18.14740
-17.51728 -17.15937 -17.03242 -16.82225 -16.70672 -16.35841 -15.91395 -15.65522
-15.22920 -14.78473 -14.74355 -14.59425 -14.56610 -14.29052 -14.16560 -13.99065
-13.57541 -13.37478 -13.21962 -13.14775 -13.00803 -12.93354 -12.89140 -12.69524
-12.64861 -12.27765 -12.11547 -11.95258 -11.83095 -11.77494 -11.63832 -11.36572
-11.17509 -10.57914 -9.93041 -9.67813 -8.97718 -8.63699 -6.23993 0.43579
0.55215 1.10686 1.22981 1.27615 1.39000 1.44967 1.67873 2.04178
2.15926 2.68143 2.85440 2.95973 3.70633 3.80191 3.83903 3.91617
3.94000 4.01419 4.06235 4.18748 4.25334 4.28170 4.29186 4.29753
4.46020 4.47197 4.53862 4.63157 4.69437 4.77402 4.82304 4.82783
4.97339 5.02375 5.04719 5.16038 5.25630 5.27893 5.35656 5.50875
5.59953 5.65246 5.91641 5.96067 6.09774 6.47816 6.69719 6.82469
7.18211 7.53212 8.48882
Molecular weight = 335.16amu
Principal moments of inertia in cm(-1)
A = 0.012734 B = 0.004268 C = 0.003736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2198.378242 B = 6559.402399 C = 7491.981156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.124 4.124
3 C 0.092 3.908
4 H 0.107 0.893
5 O -0.306 6.306
6 C 0.105 3.895
7 C -0.218 4.218
8 C -0.090 4.090
9 C -0.154 4.154
10 C -0.083 4.083
11 C -0.138 4.138
12 C -0.101 4.101
13 C 0.489 3.511
14 O -0.598 6.598
15 N -0.447 5.447
16 C -0.372 4.372
17 H 0.090 0.910
18 C 0.049 3.951
19 N -0.864 5.864
20 Si 0.897 3.103
21 H -0.272 1.272
22 H -0.263 1.263
23 H -0.245 1.245
24 C 0.113 3.887
25 C 0.450 3.550
26 O -0.524 6.524
27 O -0.364 6.364
28 C 0.028 3.972
29 H 0.065 0.935
30 H 0.056 0.944
31 H 0.072 0.928
32 H 0.056 0.944
33 H 0.076 0.924
34 H 0.126 0.874
35 H 0.144 0.856
36 H 0.153 0.847
37 H 0.156 0.844
38 H 0.070 0.930
39 H 0.087 0.913
40 H 0.043 0.957
41 H 0.285 0.715
42 H 0.120 0.880
43 H 0.117 0.883
44 H 0.057 0.943
45 H 0.058 0.942
46 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.425 3.140 -7.162 8.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.162 4.162
3 C 0.033 3.967
4 H 0.124 0.876
5 O -0.220 6.220
6 C 0.060 3.940
7 C -0.236 4.236
8 C -0.108 4.108
9 C -0.172 4.172
10 C -0.101 4.101
11 C -0.139 4.139
12 C -0.158 4.158
13 C 0.279 3.721
14 O -0.483 6.483
15 N -0.169 5.169
16 C -0.498 4.498
17 H 0.108 0.892
18 C -0.160 4.160
19 N -0.498 5.498
20 Si 0.719 3.281
21 H -0.198 1.198
22 H -0.187 1.187
23 H -0.169 1.169
24 C -0.012 4.012
25 C 0.292 3.708
26 O -0.412 6.412
27 O -0.280 6.280
28 C -0.065 4.065
29 H 0.084 0.916
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.074 0.926
33 H 0.094 0.906
34 H 0.144 0.856
35 H 0.162 0.838
36 H 0.171 0.829
37 H 0.174 0.826
38 H 0.089 0.911
39 H 0.106 0.894
40 H 0.063 0.937
41 H 0.096 0.904
42 H 0.138 0.862
43 H 0.135 0.865
44 H 0.076 0.924
45 H 0.076 0.924
46 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -4.156 2.906 -7.675 9.199
hybrid contribution 0.640 -0.049 0.797 1.024
sum -3.515 2.857 -6.878 8.236
Atomic orbital electron populations
1.21858 0.92665 1.02915 1.02173 1.21766 0.98381 0.93457 1.02582
1.21975 0.91820 0.95701 0.87211 0.87581 1.86109 1.36909 1.64122
1.34816 1.19301 0.85843 0.93560 0.95271 1.21529 0.98600 1.05950
0.97538 1.21225 0.94622 0.95260 0.99683 1.21388 1.01609 1.01906
0.92335 1.21195 0.92208 0.97012 0.99704 1.19583 0.98297 1.01982
0.94046 1.20578 0.98394 1.02996 0.93815 1.20545 0.90351 0.78141
0.83015 1.90537 1.65785 1.53281 1.38655 1.43200 1.03668 1.62898
1.07091 1.18967 1.06722 1.38110 0.85987 0.89215 1.25820 0.97585
0.98451 0.94159 1.69933 1.44004 1.36869 0.98958 0.86599 0.80107
0.81541 0.79882 1.19773 1.18747 1.16904 1.21510 0.84628 0.90169
1.04844 1.24703 0.80695 0.92350 0.73043 1.90586 1.52795 1.54317
1.43488 1.86489 1.27952 1.33240 1.80341 1.23553 1.03944 0.77743
1.01217 0.91608 0.92527 0.90887 0.92559 0.90578 0.85591 0.83843
0.82895 0.82600 0.91092 0.89400 0.93749 0.90448 0.86223 0.86493
0.92429 0.92356 0.84140
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.39 8.40 71.98 0.60 -3.78 16
2 C -0.12 -4.89 5.39 30.60 0.16 -4.72 16
3 C 0.09 3.94 1.78 29.85 0.05 3.99 16
4 H 0.11 4.49 4.70 -2.39 -0.01 4.48 16
5 O -0.31 -12.79 8.31 -73.95 -0.61 -13.40 16
6 C 0.11 3.68 5.30 22.51 0.12 3.80 16
7 C -0.22 -6.85 7.00 22.37 0.16 -6.69 16
8 C -0.09 -2.23 10.04 22.25 0.22 -2.01 16
9 C -0.15 -3.26 10.04 22.28 0.22 -3.04 16
10 C -0.08 -1.88 9.70 22.25 0.22 -1.66 16
11 C -0.14 -4.08 5.89 -19.77 -0.12 -4.19 16
12 C -0.10 -2.73 9.79 71.24 0.70 -2.03 16
13 C 0.49 24.05 6.71 87.66 0.59 24.64 16
14 O -0.60 -31.97 16.20 15.44 0.25 -31.72 16
15 N -0.45 -21.55 1.66 -639.59 -1.06 -22.61 16
16 C -0.37 -18.66 8.36 84.04 0.70 -17.96 16
17 H 0.09 4.75 5.90 -2.91 -0.02 4.73 16
18 C 0.05 2.39 5.08 84.93 0.43 2.82 16
19 N -0.86 -44.52 13.96 21.66 0.30 -44.21 16
20 Si 0.90 37.29 26.32 68.60 1.81 39.09 16
21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16
23 H -0.25 -9.84 5.70 99.48 0.57 -9.27 16
24 C 0.11 4.97 4.15 85.63 0.36 5.32 16
25 C 0.45 19.56 8.00 71.24 0.57 20.13 16
26 O -0.52 -25.69 16.03 21.98 0.35 -25.33 16
27 O -0.36 -12.94 10.57 -51.46 -0.54 -13.48 16
28 C 0.03 0.76 10.56 113.37 1.20 1.96 16
29 H 0.06 1.98 6.64 -2.39 -0.02 1.96 16
30 H 0.06 1.77 6.15 -2.39 -0.01 1.76 16
31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
33 H 0.08 3.29 6.43 -2.39 -0.02 3.28 16
34 H 0.13 4.18 4.40 -2.91 -0.01 4.17 16
35 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16
36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16
37 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16
38 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16
39 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16
40 H 0.04 1.46 7.53 -2.39 -0.02 1.44 16
41 H 0.29 13.54 8.31 -92.71 -0.77 12.77 16
42 H 0.12 4.98 7.46 -2.39 -0.02 4.96 16
43 H 0.12 4.84 4.58 -2.39 -0.01 4.83 16
44 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16
45 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16
46 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16
Total: -1.00 -67.13 372.33 7.55 -59.59
By element:
Atomic # 1 Polarization: 34.65 SS G_CDS: 0.87 Total: 35.52 kcal
Atomic # 6 Polarization: 10.38 SS G_CDS: 6.19 Total: 16.56 kcal
Atomic # 7 Polarization: -66.07 SS G_CDS: -0.76 Total: -66.82 kcal
Atomic # 8 Polarization: -83.38 SS G_CDS: -0.56 Total: -83.93 kcal
Atomic # 14 Polarization: 37.29 SS G_CDS: 1.81 Total: 39.09 kcal
Total: -67.13 7.55 -59.59 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000175888340.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.590 kcal
(2) G-P(sol) polarization free energy of solvation -67.134 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.548 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.176 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds