Wall clock time and date at job start Tue Mar 31 2020 19:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47217 * 2 1 4 4 H 1.08997 * 109.46681 * 305.00156 * 3 2 1 5 5 C 1.52994 * 109.47073 * 185.00227 * 3 2 1 6 6 O 1.42900 * 109.47514 * 304.99895 * 5 3 2 7 7 N 1.46497 * 109.46898 * 64.99986 * 3 2 1 8 8 C 1.34780 * 119.99939 * 205.00025 * 7 3 2 9 9 O 1.21715 * 120.00083 * 0.02562 * 8 7 3 10 10 C 1.46255 * 119.99768 * 179.97438 * 8 7 3 11 11 C 1.35022 * 119.99671 * 180.02562 * 10 8 7 12 12 C 1.46970 * 119.99835 * 179.72551 * 11 10 8 13 13 C 1.40029 * 120.07941 * 359.97438 * 12 11 10 14 14 C 1.37644 * 120.00086 * 179.76400 * 13 12 11 15 15 C 1.39061 * 120.16228 * 0.51533 * 14 13 12 16 16 O 1.35604 * 119.92405 * 179.76385 * 15 14 13 17 17 C 1.34766 * 117.00015 * 354.37749 * 16 15 14 18 18 H 1.07995 * 120.00085 * 5.06429 * 17 16 15 19 19 C 1.38707 * 120.00251 * 185.06590 * 17 16 15 20 20 N 1.31511 * 120.00245 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99892 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47171 * 89.99758 * 21 19 17 23 23 H 1.48499 * 109.47373 * 210.00033 * 21 19 17 24 24 H 1.48504 * 109.47317 * 329.99944 * 21 19 17 25 25 C 1.39627 * 120.15625 * 359.73786 * 15 14 13 26 26 O 1.35946 * 119.99984 * 180.02562 * 25 15 14 27 27 C 1.42898 * 117.00042 * 179.97438 * 26 25 15 28 28 C 1.38080 * 119.99504 * 0.02562 * 25 15 14 29 29 H 1.09000 * 109.47412 * 299.99702 * 1 2 3 30 30 H 1.08994 * 109.47449 * 59.99855 * 1 2 3 31 31 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47412 * 240.00298 * 2 1 3 33 33 H 1.09000 * 109.47892 * 120.00040 * 2 1 3 34 34 H 1.08999 * 109.47403 * 65.00360 * 5 3 2 35 35 H 1.09004 * 109.46817 * 184.99920 * 5 3 2 36 36 H 0.96699 * 114.00494 * 180.02562 * 6 5 3 37 37 H 0.97000 * 120.00271 * 25.00557 * 7 3 2 38 38 H 1.08002 * 120.00369 * 0.02562 * 10 8 7 39 39 H 1.08002 * 120.00490 * 359.97438 * 11 10 8 40 40 H 1.08004 * 119.99963 * 0.02806 * 13 12 11 41 41 H 1.08001 * 119.91883 * 180.25218 * 14 13 12 42 42 H 0.97006 * 120.00225 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.46767 * 60.00178 * 27 26 25 44 44 H 1.08995 * 109.47739 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47274 * 300.00372 * 27 26 25 46 46 H 1.07997 * 120.07342 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5647 1.4444 -0.1258 6 8 4.1293 0.6404 0.9120 7 7 1.6524 2.0975 1.2518 8 6 1.5256 3.4385 1.2996 9 8 1.7326 4.1053 0.3026 10 6 1.1381 4.0922 2.5492 11 6 1.0105 5.4355 2.5969 12 6 0.6153 6.0920 3.8510 13 6 0.3701 5.3260 4.9972 14 6 0.0047 5.9429 6.1722 15 6 -0.1323 7.3258 6.2220 16 8 -0.4971 7.9281 7.3809 17 6 -0.8241 7.1241 8.4118 18 1 -0.7103 6.0541 8.3193 19 6 -1.3069 7.6707 9.5917 20 7 -1.6265 6.8860 10.5975 21 14 -1.5032 9.5214 9.7520 22 1 -2.8629 9.9157 9.3038 23 1 -1.3151 9.9182 11.1705 24 1 -0.4875 10.2018 8.9089 25 6 0.1054 8.0957 5.0817 26 8 -0.0290 9.4475 5.1342 27 6 0.2304 10.1724 3.9303 28 6 0.4770 7.4840 3.9009 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0378 -1.0961 35 1 3.9354 2.4655 -0.0367 36 1 5.0951 0.5963 0.8940 37 1 1.4871 1.5661 2.0463 38 1 0.9540 3.5005 3.4338 39 1 1.1950 6.0273 1.7125 40 1 0.4718 4.2513 4.9605 41 1 -0.1801 5.3510 7.0565 42 1 -1.9638 7.2683 11.4228 43 1 -0.4554 9.8399 3.1511 44 1 0.0878 11.2380 4.1098 45 1 1.2571 9.9923 3.6117 46 1 0.6608 8.0783 3.0181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182363999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:13 Heat of formation + Delta-G solvation = -113.626950 kcal Electronic energy + Delta-G solvation = -27825.797636 eV Core-core repulsion = 23682.123916 eV Total energy + Delta-G solvation = -4143.673719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.99727 -39.76156 -37.86150 -37.61611 -36.65640 -35.35464 -33.09741 -32.51219 -32.22862 -29.86289 -29.27199 -28.49386 -26.70090 -25.51485 -24.10606 -23.34139 -21.94162 -21.26762 -20.61674 -19.31901 -18.16070 -17.95598 -17.73853 -17.03472 -16.48125 -15.98776 -15.55337 -15.37151 -15.31236 -14.72059 -14.56634 -14.29062 -14.22014 -14.01291 -13.95565 -13.80292 -13.57193 -13.24892 -12.83370 -12.60134 -12.50561 -12.32177 -11.95075 -11.93687 -11.67572 -11.58454 -11.34020 -11.14638 -11.09556 -10.98762 -10.89210 -10.73861 -10.32764 -10.29682 -9.80574 -9.59707 -9.47154 -9.12360 -8.87870 -8.08640 -7.05352 -6.58232 -4.18122 0.94539 2.00334 2.44988 3.16917 3.19712 3.21399 3.38768 3.51301 3.78211 4.01000 4.15255 4.37923 4.41126 4.57221 4.71154 4.84533 4.92729 4.95672 5.07074 5.16901 5.18768 5.29172 5.36252 5.40942 5.41841 5.45186 5.54701 5.56653 5.65918 5.66746 5.70315 5.85894 5.88667 6.00515 6.06792 6.33079 6.36202 6.43058 6.53163 6.76984 6.91361 7.15758 7.30165 7.31977 7.49882 7.56610 7.78693 7.98262 8.31695 8.75466 9.37372 10.47541 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002194 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.815526 B =12757.187615 C =13801.070268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.149 3.851 4 H 0.098 0.902 5 C 0.062 3.938 6 O -0.569 6.569 7 N -0.718 5.718 8 C 0.556 3.444 9 O -0.563 6.563 10 C -0.269 4.269 11 C 0.029 3.971 12 C -0.155 4.155 13 C -0.063 4.063 14 C -0.209 4.209 15 C 0.155 3.845 16 O -0.189 6.189 17 C -0.388 4.388 18 H 0.111 0.889 19 C 0.067 3.933 20 N -0.866 5.866 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.254 1.254 25 C 0.051 3.949 26 O -0.309 6.309 27 C 0.029 3.971 28 C -0.137 4.137 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.377 0.623 37 H 0.403 0.597 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.144 0.856 42 H 0.283 0.717 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 -9.014 -18.916 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C 0.043 3.957 4 H 0.116 0.884 5 C -0.017 4.017 6 O -0.374 6.374 7 N -0.369 5.369 8 C 0.347 3.653 9 O -0.444 6.444 10 C -0.290 4.290 11 C 0.009 3.991 12 C -0.156 4.156 13 C -0.082 4.082 14 C -0.229 4.229 15 C 0.100 3.900 16 O -0.092 6.092 17 C -0.463 4.463 18 H 0.128 0.872 19 C -0.139 4.139 20 N -0.502 5.502 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.178 1.178 25 C 0.006 3.994 26 O -0.223 6.223 27 C -0.066 4.066 28 C -0.156 4.156 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.224 0.776 37 H 0.237 0.763 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.507 -8.287 -18.964 21.694 hybrid contribution 0.493 0.367 0.203 0.647 sum 6.999 -7.920 -18.760 21.533 Atomic orbital electron populations 1.21798 0.95331 1.01712 1.02343 1.21699 0.96168 0.95033 1.03462 1.21049 0.92188 0.93906 0.88528 0.88403 1.22664 0.94436 0.94606 0.89967 1.86457 1.25251 1.72130 1.53532 1.45830 1.70894 1.06965 1.13230 1.18413 0.76169 0.81719 0.88950 1.90759 1.52307 1.64317 1.37026 1.22535 1.13225 0.95943 0.97315 1.22225 0.87294 0.94040 0.95516 1.18250 1.11432 0.92354 0.93607 1.20992 0.96750 0.98832 0.91576 1.20980 1.09041 0.93153 0.99706 1.18619 0.96030 0.90420 0.84910 1.83585 1.72305 1.36088 1.17219 1.20904 1.43157 0.91976 0.90234 0.87185 1.24516 0.94848 1.00601 0.93887 1.69621 1.40173 1.36230 1.04139 0.86167 0.80089 0.83188 0.77595 1.19633 1.20624 1.17767 1.18038 1.06346 0.82487 0.92510 1.86174 1.85764 1.15662 1.34698 1.22932 1.00125 0.96517 0.87049 1.20891 1.04155 0.94528 0.96008 0.92323 0.92720 0.92532 0.90824 0.90483 0.93092 0.92989 0.77600 0.76276 0.85669 0.85898 0.86306 0.83871 0.90659 0.93247 0.88951 0.93279 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.80 37.15 0.36 -0.76 16 2 C -0.13 -0.92 5.19 -26.73 -0.14 -1.06 16 3 C 0.15 1.38 2.37 -67.93 -0.16 1.22 16 4 H 0.10 1.01 7.58 -51.93 -0.39 0.62 16 5 C 0.06 0.54 6.85 37.15 0.25 0.79 16 6 O -0.57 -4.72 12.83 -35.23 -0.45 -5.17 16 7 N -0.72 -7.58 4.47 -55.25 -0.25 -7.82 16 8 C 0.56 7.58 7.70 -13.04 -0.10 7.48 16 9 O -0.56 -9.35 15.89 5.18 0.08 -9.27 16 10 C -0.27 -3.62 9.41 -37.51 -0.35 -3.97 16 11 C 0.03 0.43 9.45 -37.19 -0.35 0.08 16 12 C -0.16 -2.58 5.87 -105.04 -0.62 -3.19 16 13 C -0.06 -1.09 9.40 -39.13 -0.37 -1.46 16 14 C -0.21 -4.28 9.14 -39.49 -0.36 -4.64 16 15 C 0.16 3.53 6.67 -38.76 -0.26 3.27 16 16 O -0.19 -4.93 8.35 -13.94 -0.12 -5.04 16 17 C -0.39 -10.53 9.94 30.91 0.31 -10.22 16 18 H 0.11 2.99 5.42 -52.49 -0.28 2.71 16 19 C 0.07 1.82 5.49 -17.52 -0.10 1.72 16 20 N -0.87 -24.05 13.96 55.48 0.77 -23.27 16 21 Si 0.90 21.28 28.62 -169.99 -4.86 16.42 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.05 1.03 6.70 -39.12 -0.26 0.77 16 26 O -0.31 -6.04 10.28 -34.19 -0.35 -6.39 16 27 C 0.03 0.39 9.81 101.05 0.99 1.38 16 28 C -0.14 -2.32 8.77 -38.99 -0.34 -2.67 16 29 H 0.06 0.47 7.75 -51.93 -0.40 0.06 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.38 1.67 9.12 45.56 0.42 2.09 16 37 H 0.40 3.63 8.58 -40.82 -0.35 3.28 16 38 H 0.13 1.49 6.06 -52.49 -0.32 1.17 16 39 H 0.12 1.77 7.52 -52.49 -0.39 1.38 16 40 H 0.12 1.71 6.15 -52.48 -0.32 1.38 16 41 H 0.14 3.00 5.62 -52.49 -0.29 2.70 16 42 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 46 H 0.13 1.76 6.28 -52.49 -0.33 1.43 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -32.21 388.56 -6.35 -38.56 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.54 Total: 7.40 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.49 Total: -11.28 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.53 Total: -31.09 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.84 Total: -25.87 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.21 -6.35 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182363999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.063 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds