Wall clock time and date at job start Tue Mar 31 2020 19:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47217 * 2 1 4 4 H 1.08997 * 109.46681 * 305.00156 * 3 2 1 5 5 C 1.52994 * 109.47073 * 185.00227 * 3 2 1 6 6 O 1.42900 * 109.47514 * 304.99895 * 5 3 2 7 7 N 1.46497 * 109.46898 * 64.99986 * 3 2 1 8 8 C 1.34780 * 119.99939 * 205.00025 * 7 3 2 9 9 O 1.21715 * 120.00083 * 0.02562 * 8 7 3 10 10 C 1.46255 * 119.99768 * 179.97438 * 8 7 3 11 11 C 1.35022 * 119.99671 * 180.02562 * 10 8 7 12 12 C 1.46970 * 119.99835 * 179.72551 * 11 10 8 13 13 C 1.40029 * 120.07941 * 359.97438 * 12 11 10 14 14 C 1.37644 * 120.00086 * 179.76400 * 13 12 11 15 15 C 1.39061 * 120.16228 * 0.51533 * 14 13 12 16 16 O 1.35604 * 119.92405 * 179.76385 * 15 14 13 17 17 C 1.34766 * 117.00015 * 354.37749 * 16 15 14 18 18 H 1.07995 * 120.00085 * 5.06429 * 17 16 15 19 19 C 1.38707 * 120.00251 * 185.06590 * 17 16 15 20 20 N 1.31511 * 120.00245 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99892 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47171 * 89.99758 * 21 19 17 23 23 H 1.48499 * 109.47373 * 210.00033 * 21 19 17 24 24 H 1.48504 * 109.47317 * 329.99944 * 21 19 17 25 25 C 1.39627 * 120.15625 * 359.73786 * 15 14 13 26 26 O 1.35946 * 119.99984 * 180.02562 * 25 15 14 27 27 C 1.42898 * 117.00042 * 179.97438 * 26 25 15 28 28 C 1.38080 * 119.99504 * 0.02562 * 25 15 14 29 29 H 1.09000 * 109.47412 * 299.99702 * 1 2 3 30 30 H 1.08994 * 109.47449 * 59.99855 * 1 2 3 31 31 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47412 * 240.00298 * 2 1 3 33 33 H 1.09000 * 109.47892 * 120.00040 * 2 1 3 34 34 H 1.08999 * 109.47403 * 65.00360 * 5 3 2 35 35 H 1.09004 * 109.46817 * 184.99920 * 5 3 2 36 36 H 0.96699 * 114.00494 * 180.02562 * 6 5 3 37 37 H 0.97000 * 120.00271 * 25.00557 * 7 3 2 38 38 H 1.08002 * 120.00369 * 0.02562 * 10 8 7 39 39 H 1.08002 * 120.00490 * 359.97438 * 11 10 8 40 40 H 1.08004 * 119.99963 * 0.02806 * 13 12 11 41 41 H 1.08001 * 119.91883 * 180.25218 * 14 13 12 42 42 H 0.97006 * 120.00225 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.46767 * 60.00178 * 27 26 25 44 44 H 1.08995 * 109.47739 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47274 * 300.00372 * 27 26 25 46 46 H 1.07997 * 120.07342 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5647 1.4444 -0.1258 6 8 4.1293 0.6404 0.9120 7 7 1.6524 2.0975 1.2518 8 6 1.5256 3.4385 1.2996 9 8 1.7326 4.1053 0.3026 10 6 1.1381 4.0922 2.5492 11 6 1.0105 5.4355 2.5969 12 6 0.6153 6.0920 3.8510 13 6 0.3701 5.3260 4.9972 14 6 0.0047 5.9429 6.1722 15 6 -0.1323 7.3258 6.2220 16 8 -0.4971 7.9281 7.3809 17 6 -0.8241 7.1241 8.4118 18 1 -0.7103 6.0541 8.3193 19 6 -1.3069 7.6707 9.5917 20 7 -1.6265 6.8860 10.5975 21 14 -1.5032 9.5214 9.7520 22 1 -2.8629 9.9157 9.3038 23 1 -1.3151 9.9182 11.1705 24 1 -0.4875 10.2018 8.9089 25 6 0.1054 8.0957 5.0817 26 8 -0.0290 9.4475 5.1342 27 6 0.2304 10.1724 3.9303 28 6 0.4770 7.4840 3.9009 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8498 1.0378 -1.0961 35 1 3.9354 2.4655 -0.0367 36 1 5.0951 0.5963 0.8940 37 1 1.4871 1.5661 2.0463 38 1 0.9540 3.5005 3.4338 39 1 1.1950 6.0273 1.7125 40 1 0.4718 4.2513 4.9605 41 1 -0.1801 5.3510 7.0565 42 1 -1.9638 7.2683 11.4228 43 1 -0.4554 9.8399 3.1511 44 1 0.0878 11.2380 4.1098 45 1 1.2571 9.9923 3.6117 46 1 0.6608 8.0783 3.0181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182363999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:12 Heat of formation + Delta-G solvation = -136.964580 kcal Electronic energy + Delta-G solvation = -27826.809631 eV Core-core repulsion = 23682.123916 eV Total energy + Delta-G solvation = -4144.685715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43062 -40.88161 -39.43694 -38.51292 -38.01462 -36.10944 -34.67816 -34.11125 -33.16235 -31.33269 -30.42637 -29.45598 -27.90568 -27.27780 -25.14852 -24.29040 -23.38238 -22.49824 -21.50613 -20.50084 -19.91794 -19.51471 -18.56323 -18.13236 -17.76563 -17.13020 -16.88289 -16.73766 -16.29620 -16.18515 -15.67072 -15.56700 -15.43360 -15.29611 -15.09705 -14.95139 -14.86475 -14.41032 -14.24539 -13.86866 -13.54316 -13.39376 -13.29024 -13.22191 -12.96410 -12.75070 -12.55807 -12.31473 -12.14801 -12.10835 -12.05704 -11.96354 -11.78207 -11.43111 -11.07394 -11.05565 -10.82282 -10.61300 -10.03888 -9.51444 -8.61152 -8.53166 -6.20392 -0.35491 0.48745 1.06749 1.30641 1.35169 1.52977 2.26583 2.27609 2.33443 2.48346 2.78585 2.94014 3.09542 3.41375 3.66944 3.80163 3.88937 4.04775 4.08244 4.22640 4.25540 4.30248 4.36664 4.44199 4.47506 4.48586 4.52698 4.53020 4.71050 4.73567 4.77748 4.87541 4.92409 5.07031 5.10990 5.12447 5.21945 5.36760 5.42271 5.45524 5.57830 5.58748 5.74223 5.76515 5.99782 6.54064 6.61062 6.81116 6.86074 7.27614 7.55825 8.57406 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002194 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.815526 B =12757.187615 C =13801.070268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.142 3.858 4 H 0.087 0.913 5 C 0.067 3.933 6 O -0.580 6.580 7 N -0.704 5.704 8 C 0.551 3.449 9 O -0.592 6.592 10 C -0.236 4.236 11 C 0.010 3.990 12 C -0.121 4.121 13 C -0.072 4.072 14 C -0.208 4.208 15 C 0.109 3.891 16 O -0.229 6.229 17 C -0.399 4.399 18 H 0.091 0.909 19 C 0.017 3.983 20 N -0.914 5.914 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.265 1.265 24 H -0.267 1.267 25 C 0.050 3.950 26 O -0.341 6.341 27 C 0.018 3.982 28 C -0.133 4.133 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.031 0.969 36 H 0.394 0.606 37 H 0.412 0.588 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.128 0.872 42 H 0.286 0.714 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 -10.149 -22.534 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.037 3.963 4 H 0.105 0.895 5 C -0.012 4.012 6 O -0.388 6.388 7 N -0.354 5.354 8 C 0.342 3.658 9 O -0.475 6.475 10 C -0.257 4.257 11 C -0.010 4.010 12 C -0.122 4.122 13 C -0.090 4.090 14 C -0.228 4.228 15 C 0.058 3.942 16 O -0.135 6.135 17 C -0.475 4.475 18 H 0.109 0.891 19 C -0.183 4.183 20 N -0.554 5.554 21 Si 0.786 3.214 22 H -0.192 1.192 23 H -0.189 1.189 24 H -0.192 1.192 25 C 0.005 3.995 26 O -0.256 6.256 27 C -0.076 4.076 28 C -0.152 4.152 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.244 0.756 37 H 0.249 0.751 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.145 0.855 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.085 0.915 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.748 -9.466 -22.641 25.734 hybrid contribution 0.345 0.421 0.690 0.879 sum 8.093 -9.044 -21.951 25.083 Atomic orbital electron populations 1.21801 0.95329 1.02288 1.01772 1.21639 0.96032 0.93573 1.04143 1.21226 0.92972 0.94766 0.87344 0.89453 1.22556 0.93690 0.93753 0.91212 1.86409 1.27004 1.71821 1.53520 1.45805 1.69206 1.06103 1.14276 1.18467 0.76248 0.82612 0.88493 1.90760 1.53625 1.65171 1.37952 1.22863 1.09157 0.95816 0.97867 1.22147 0.89418 0.94632 0.94794 1.18589 1.07307 0.92368 0.93927 1.21278 0.96624 1.00588 0.90489 1.21056 1.08585 0.92600 1.00510 1.19239 0.97768 0.91903 0.85294 1.83550 1.76013 1.35950 1.18011 1.20823 1.43857 0.91528 0.91296 0.89129 1.25177 0.95127 1.04219 0.93742 1.69687 1.43233 1.37539 1.04892 0.85323 0.79484 0.78766 0.77861 1.19240 1.18928 1.19188 1.18247 1.05685 0.83197 0.92415 1.86140 1.85909 1.15449 1.38081 1.23328 1.01648 0.97088 0.85576 1.21291 1.02789 0.95050 0.96047 0.93122 0.93040 0.91456 0.89316 0.90566 0.90842 0.95087 0.75629 0.75140 0.83610 0.85029 0.83023 0.85461 0.90403 0.91478 0.86877 0.91484 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.80 71.98 0.71 -1.14 16 2 C -0.12 -1.34 5.19 30.59 0.16 -1.18 16 3 C 0.14 2.24 2.37 44.99 0.11 2.34 16 4 H 0.09 1.61 7.58 -2.39 -0.02 1.59 16 5 C 0.07 0.97 6.85 71.98 0.49 1.46 16 6 O -0.58 -7.84 12.83 -148.98 -1.91 -9.75 16 7 N -0.70 -12.66 4.47 -446.92 -2.00 -14.66 16 8 C 0.55 13.26 7.70 86.33 0.66 13.92 16 9 O -0.59 -18.11 15.89 -4.40 -0.07 -18.18 16 10 C -0.24 -5.40 9.41 23.61 0.22 -5.18 16 11 C 0.01 0.25 9.45 23.82 0.23 0.48 16 12 C -0.12 -3.65 5.87 -20.13 -0.12 -3.77 16 13 C -0.07 -2.34 9.40 22.56 0.21 -2.13 16 14 C -0.21 -8.71 9.14 22.33 0.20 -8.51 16 15 C 0.11 5.11 6.67 22.80 0.15 5.26 16 16 O -0.23 -12.60 8.35 -6.51 -0.05 -12.65 16 17 C -0.40 -23.18 9.94 67.93 0.68 -22.50 16 18 H 0.09 5.36 5.42 -2.91 -0.02 5.35 16 19 C 0.02 0.98 5.49 84.85 0.47 1.45 16 20 N -0.91 -53.63 13.96 21.62 0.30 -53.32 16 21 Si 0.96 46.03 28.62 68.60 1.96 47.99 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 25 C 0.05 1.98 6.70 22.57 0.15 2.13 16 26 O -0.34 -13.17 10.28 -78.96 -0.81 -13.98 16 27 C 0.02 0.43 9.81 113.37 1.11 1.54 16 28 C -0.13 -4.18 8.77 22.65 0.20 -3.98 16 29 H 0.05 0.68 7.75 -2.39 -0.02 0.66 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.94 7.73 -2.39 -0.02 0.92 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.39 2.34 9.12 -74.06 -0.68 1.67 16 37 H 0.41 5.97 8.58 -92.71 -0.80 5.17 16 38 H 0.15 2.74 6.06 -2.91 -0.02 2.73 16 39 H 0.13 3.26 7.52 -2.91 -0.02 3.24 16 40 H 0.15 3.85 6.15 -2.91 -0.02 3.83 16 41 H 0.13 5.69 5.62 -2.91 -0.02 5.67 16 42 H 0.29 15.41 8.31 -92.70 -0.77 14.64 16 43 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 44 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 46 H 0.16 3.86 6.28 -2.91 -0.02 3.84 16 Total: -1.00 -74.49 388.56 2.61 -71.88 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.44 Total: 22.47 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 5.63 Total: -19.80 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.70 Total: -67.98 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -2.85 Total: -54.56 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.96 Total: 47.99 kcal Total: -74.49 2.61 -71.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182363999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.084 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds