Wall clock time and date at job start Tue Mar 31 2020 19:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 O 1.45199 * 109.47330 * 60.00469 * 12 2 1 14 14 C 1.34229 * 117.00070 * 180.02562 * 13 12 2 15 15 O 1.20825 * 120.00043 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00094 * 179.97438 * 14 13 12 17 17 H 1.08999 * 110.85579 * 303.79079 * 16 14 13 18 18 C 1.54629 * 110.96826 * 67.61608 * 16 14 13 19 19 C 1.51280 * 104.19832 * 93.32544 * 18 16 14 20 20 O 1.21273 * 124.94412 * 196.29060 * 19 18 16 21 21 N 1.34420 * 110.11201 * 16.24495 * 19 18 16 22 22 C 1.46502 * 124.35050 * 180.42684 * 21 19 18 23 23 C 1.50694 * 109.47186 * 269.98571 * 22 21 19 24 24 C 1.34513 * 125.79133 * 89.71607 * 23 22 21 25 25 C 1.41391 * 106.84036 * 179.88655 * 24 23 22 26 26 C 1.34508 * 106.84020 * 0.36947 * 25 24 23 27 27 O 1.34306 * 125.78603 * 270.01680 * 23 22 21 28 28 C 1.46769 * 111.30307 * 0.41729 * 21 19 18 29 29 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 31 31 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 34 34 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 38 38 H 1.09007 * 110.48509 * 212.00203 * 18 16 14 39 39 H 1.08997 * 110.49003 * 334.64318 * 18 16 14 40 40 H 1.09004 * 109.46522 * 29.98271 * 22 21 19 41 41 H 1.08999 * 109.47126 * 149.97801 * 22 21 19 42 42 H 1.08001 * 126.58030 * 0.02562 * 24 23 22 43 43 H 1.07995 * 126.57883 * 180.12186 * 25 24 23 44 44 H 1.08004 * 125.79054 * 179.79084 * 26 25 24 45 45 H 1.09002 * 110.24089 * 223.98303 * 28 21 19 46 46 H 1.08995 * 110.32343 * 102.01733 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.8178 -1.1115 4.0022 10 1 1.8417 -0.4092 5.2204 11 1 1.8384 -2.5124 4.0138 12 6 2.0399 -0.7213 -1.2492 13 8 1.5560 -0.0368 -2.4348 14 6 1.9163 -0.5472 -3.6228 15 8 2.6133 -1.5330 -3.6705 16 6 1.4514 0.1093 -4.8972 17 1 0.3641 0.1809 -4.9226 18 6 2.1026 1.5009 -5.0722 19 6 3.3329 1.2321 -5.9104 20 8 4.2651 1.9967 -6.0409 21 7 3.2428 0.0220 -6.4888 22 6 4.2687 -0.5560 -7.3604 23 6 3.9907 -0.1674 -8.7896 24 6 4.4518 0.9338 -9.4094 25 6 3.9521 0.8992 -10.7316 26 6 3.2089 -0.2168 -10.8382 27 8 3.2358 -0.8590 -9.6589 28 6 1.9848 -0.6459 -6.1347 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7164 1.1668 3.4844 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -1.7489 -1.2492 38 1 1.4250 2.1761 -5.5948 39 1 2.3836 1.9151 -4.1040 40 1 5.2489 -0.1809 -7.0660 41 1 4.2529 -1.6421 -7.2694 42 1 5.0843 1.6967 -8.9801 43 1 4.1295 1.6308 -11.5060 44 1 2.6803 -0.5416 -11.7223 45 1 2.1695 -1.6914 -5.8878 46 1 1.2730 -0.5730 -6.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184826067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:40 Heat of formation + Delta-G solvation = -103.525661 kcal Electronic energy + Delta-G solvation = -29078.317183 eV Core-core repulsion = 24935.081488 eV Total energy + Delta-G solvation = -4143.235695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.82621 -41.06618 -39.57398 -36.99567 -36.21819 -34.91419 -34.06555 -33.08973 -31.30724 -30.21524 -27.98661 -26.66818 -25.76768 -25.65161 -25.16902 -23.49371 -21.99546 -21.07450 -20.38261 -19.70222 -18.90069 -18.01903 -17.64195 -17.13048 -16.38856 -16.10801 -15.85911 -15.83032 -15.50661 -15.31795 -14.76733 -14.49473 -13.89592 -13.59123 -13.41998 -13.29262 -13.09520 -13.02263 -12.91906 -12.89897 -12.51676 -12.15285 -12.06896 -11.86086 -11.60788 -11.49914 -11.19157 -10.97941 -10.76451 -10.44808 -10.28659 -10.20480 -10.12867 -10.03973 -9.95303 -9.45865 -9.36433 -9.15253 -8.80115 -8.79335 -8.39844 -6.04459 -4.16246 1.33654 2.26417 2.33535 2.40360 2.70228 2.93161 3.01319 3.27930 3.32598 3.36125 4.01259 4.09429 4.35527 4.37145 4.51975 4.68854 4.77763 4.86787 4.97346 5.15360 5.19141 5.21984 5.23277 5.34265 5.51547 5.54385 5.62503 5.69331 5.79582 6.01078 6.04335 6.14272 6.21610 6.41594 6.69664 6.75229 6.90212 6.94665 6.97965 7.09557 7.10854 7.36385 7.58875 7.67399 7.92492 8.02285 8.05476 8.16548 8.35861 8.83254 9.49353 10.96661 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.002220 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.735641 B =12609.147230 C =12711.575116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.085 3.915 13 O -0.343 6.343 14 C 0.460 3.540 15 O -0.511 6.511 16 C -0.099 4.099 17 H 0.136 0.864 18 C -0.144 4.144 19 C 0.521 3.479 20 O -0.522 6.522 21 N -0.614 5.614 22 C 0.210 3.790 23 C -0.039 4.039 24 C -0.185 4.185 25 C -0.217 4.217 26 C -0.038 4.038 27 O -0.174 6.174 28 C 0.114 3.886 29 H 0.084 0.916 30 H 0.017 0.983 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.085 0.915 35 H 0.262 0.738 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.202 0.798 45 H 0.101 0.899 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -0.776 -24.010 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.012 3.988 13 O -0.258 6.258 14 C 0.302 3.698 15 O -0.401 6.401 16 C -0.118 4.118 17 H 0.154 0.846 18 C -0.184 4.184 19 C 0.309 3.691 20 O -0.398 6.398 21 N -0.348 5.348 22 C 0.088 3.912 23 C -0.090 4.090 24 C -0.205 4.205 25 C -0.236 4.236 26 C -0.107 4.107 27 O -0.070 6.070 28 C -0.008 4.008 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.219 0.781 45 H 0.119 0.881 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.662 -0.847 -23.825 23.849 hybrid contribution 0.404 -0.447 0.631 0.872 sum 1.066 -1.293 -23.194 23.255 Atomic orbital electron populations 1.21770 0.97267 0.98944 1.00708 1.18250 0.93455 0.93096 0.88212 1.21778 0.98130 0.98141 1.00734 1.20884 1.32188 1.12271 0.89794 0.92585 1.24857 0.94795 0.94900 0.98793 1.69816 1.36233 1.22448 1.23459 0.86597 0.79262 0.79715 0.82067 1.20239 1.21192 1.20247 1.23730 0.98261 0.95810 0.80984 1.86508 1.68837 1.55741 1.14759 1.23041 0.77814 0.82521 0.86397 1.90634 1.35450 1.25814 1.88153 1.21939 1.03819 0.95635 0.90418 0.84604 1.22363 0.96299 0.96454 1.03253 1.20912 0.87989 0.80750 0.79444 1.90727 1.36302 1.49637 1.63116 1.48261 1.20161 1.18593 1.47763 1.19643 0.91835 0.99906 0.79825 1.22945 0.98424 0.94352 0.93267 1.21761 1.04932 0.99295 0.94538 1.21885 1.03189 1.00329 0.98187 1.24067 1.03823 0.94495 0.88270 1.84025 1.56387 1.46443 1.20111 1.22104 0.85155 0.98662 0.94904 0.89734 0.96423 0.95828 0.95821 0.96432 0.89675 0.92809 0.92493 0.92401 0.86111 0.86328 0.86681 0.88190 0.83232 0.83451 0.78103 0.88131 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.11 37.16 0.30 -2.70 16 2 C 0.07 1.67 0.58 -155.66 -0.09 1.58 16 3 C -0.13 -3.07 8.10 37.16 0.30 -2.77 16 4 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.60 9.35 55.43 0.52 -23.09 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 C 0.08 1.80 4.26 37.16 0.16 1.96 16 13 O -0.34 -6.30 8.86 -39.26 -0.35 -6.64 16 14 C 0.46 7.19 7.20 36.01 0.26 7.45 16 15 O -0.51 -9.21 15.28 -18.75 -0.29 -9.49 16 16 C -0.10 -1.03 3.66 -90.14 -0.33 -1.36 16 17 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.14 -1.55 6.40 -26.74 -0.17 -1.72 16 19 C 0.52 6.91 8.02 -10.86 -0.09 6.83 16 20 O -0.52 -8.64 17.59 5.56 0.10 -8.54 16 21 N -0.61 -6.88 2.92 -173.79 -0.51 -7.39 16 22 C 0.21 2.09 6.46 -5.20 -0.03 2.06 16 23 C -0.04 -0.40 6.90 -35.63 -0.25 -0.65 16 24 C -0.19 -1.96 10.81 -39.70 -0.43 -2.39 16 25 C -0.22 -1.90 10.91 -39.70 -0.43 -2.33 16 26 C -0.04 -0.30 12.09 29.41 0.36 0.05 16 27 O -0.17 -1.73 10.65 5.67 0.06 -1.67 16 28 C 0.11 1.08 6.68 -3.12 -0.02 1.05 16 29 H 0.08 2.14 6.08 -51.93 -0.32 1.83 16 30 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.36 7.68 -51.93 -0.40 -0.03 16 34 H 0.08 2.18 6.06 -51.93 -0.31 1.87 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 38 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 1.45 7.89 -51.93 -0.41 1.04 16 40 H 0.12 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.20 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.10 1.01 7.02 -51.93 -0.36 0.65 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -31.93 384.53 -7.33 -39.26 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.80 Total: 1.12 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -0.83 Total: -4.96 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.01 Total: -30.47 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.48 Total: -26.35 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.93 -7.33 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184826067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.264 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds