Wall clock time and date at job start Tue Mar 31 2020 19:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 O 1.45199 * 109.47330 * 60.00469 * 12 2 1 14 14 C 1.34229 * 117.00070 * 180.02562 * 13 12 2 15 15 O 1.20825 * 120.00043 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00094 * 179.97438 * 14 13 12 17 17 H 1.08999 * 110.85579 * 303.79079 * 16 14 13 18 18 C 1.54629 * 110.96826 * 67.61608 * 16 14 13 19 19 C 1.51280 * 104.19832 * 93.32544 * 18 16 14 20 20 O 1.21273 * 124.94412 * 196.29060 * 19 18 16 21 21 N 1.34420 * 110.11201 * 16.24495 * 19 18 16 22 22 C 1.46502 * 124.35050 * 180.42684 * 21 19 18 23 23 C 1.50694 * 109.47186 * 269.98571 * 22 21 19 24 24 C 1.34513 * 125.79133 * 89.71607 * 23 22 21 25 25 C 1.41391 * 106.84036 * 179.88655 * 24 23 22 26 26 C 1.34508 * 106.84020 * 0.36947 * 25 24 23 27 27 O 1.34306 * 125.78603 * 270.01680 * 23 22 21 28 28 C 1.46769 * 111.30307 * 0.41729 * 21 19 18 29 29 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 31 31 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 34 34 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 38 38 H 1.09007 * 110.48509 * 212.00203 * 18 16 14 39 39 H 1.08997 * 110.49003 * 334.64318 * 18 16 14 40 40 H 1.09004 * 109.46522 * 29.98271 * 22 21 19 41 41 H 1.08999 * 109.47126 * 149.97801 * 22 21 19 42 42 H 1.08001 * 126.58030 * 0.02562 * 24 23 22 43 43 H 1.07995 * 126.57883 * 180.12186 * 25 24 23 44 44 H 1.08004 * 125.79054 * 179.79084 * 26 25 24 45 45 H 1.09002 * 110.24089 * 223.98303 * 28 21 19 46 46 H 1.08995 * 110.32343 * 102.01733 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.8178 -1.1115 4.0022 10 1 1.8417 -0.4092 5.2204 11 1 1.8384 -2.5124 4.0138 12 6 2.0399 -0.7213 -1.2492 13 8 1.5560 -0.0368 -2.4348 14 6 1.9163 -0.5472 -3.6228 15 8 2.6133 -1.5330 -3.6705 16 6 1.4514 0.1093 -4.8972 17 1 0.3641 0.1809 -4.9226 18 6 2.1026 1.5009 -5.0722 19 6 3.3329 1.2321 -5.9104 20 8 4.2651 1.9967 -6.0409 21 7 3.2428 0.0220 -6.4888 22 6 4.2687 -0.5560 -7.3604 23 6 3.9907 -0.1674 -8.7896 24 6 4.4518 0.9338 -9.4094 25 6 3.9521 0.8992 -10.7316 26 6 3.2089 -0.2168 -10.8382 27 8 3.2358 -0.8590 -9.6589 28 6 1.9848 -0.6459 -6.1347 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7164 1.1668 3.4844 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -1.7489 -1.2492 38 1 1.4250 2.1761 -5.5948 39 1 2.3836 1.9151 -4.1040 40 1 5.2489 -0.1809 -7.0660 41 1 4.2529 -1.6421 -7.2694 42 1 5.0843 1.6967 -8.9801 43 1 4.1295 1.6308 -11.5060 44 1 2.6803 -0.5416 -11.7223 45 1 2.1695 -1.6914 -5.8878 46 1 1.2730 -0.5730 -6.9569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184826067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:39 Heat of formation + Delta-G solvation = -120.885308 kcal Electronic energy + Delta-G solvation = -29079.069954 eV Core-core repulsion = 24935.081488 eV Total energy + Delta-G solvation = -4143.988465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.52620 -42.13521 -40.80768 -38.44309 -37.42429 -36.58680 -34.90818 -33.81255 -33.23907 -31.01716 -28.88862 -27.84842 -27.54466 -27.27926 -26.82628 -24.62988 -22.69993 -21.83040 -21.55349 -20.70746 -20.58780 -19.08823 -18.50188 -18.05597 -17.72941 -17.67920 -17.27323 -16.77151 -16.72228 -16.46092 -16.17409 -15.42228 -15.03085 -14.92997 -14.70017 -14.60227 -14.33326 -13.88466 -13.79114 -13.72203 -13.65357 -13.52193 -13.25110 -13.17781 -12.90766 -12.86066 -12.77771 -12.65031 -12.46120 -12.30854 -12.13449 -11.70623 -11.55394 -11.26480 -11.15492 -11.06731 -10.88982 -10.72656 -10.39130 -10.02848 -9.49774 -8.04008 -6.21789 0.62520 1.15693 1.37186 1.44246 1.44846 1.51461 1.57481 1.73656 1.99012 2.18876 2.45283 3.15234 3.19352 3.23915 3.61100 3.68596 3.77845 4.03065 4.09330 4.25333 4.27898 4.30021 4.32763 4.40724 4.53041 4.59573 4.63166 4.75675 4.78906 4.87119 4.88752 4.98402 5.07292 5.14591 5.21279 5.26048 5.30327 5.39579 5.53367 5.60873 5.66309 5.68260 5.90054 6.10716 6.17508 6.19968 6.38456 6.73405 6.83989 6.96046 7.45972 8.95077 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.002220 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.735641 B =12609.147230 C =12711.575116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.060 3.940 3 C -0.120 4.120 4 C -0.534 4.534 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.099 3.901 13 O -0.347 6.347 14 C 0.455 3.545 15 O -0.538 6.538 16 C -0.085 4.085 17 H 0.181 0.819 18 C -0.138 4.138 19 C 0.508 3.492 20 O -0.568 6.568 21 N -0.613 5.613 22 C 0.206 3.794 23 C -0.048 4.048 24 C -0.204 4.204 25 C -0.233 4.233 26 C -0.026 4.026 27 O -0.181 6.181 28 C 0.116 3.884 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.021 0.979 32 H 0.014 0.986 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.262 0.738 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.158 0.842 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.165 0.835 44 H 0.243 0.757 45 H 0.096 0.904 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -1.320 -26.020 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 C -0.177 4.177 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.776 3.224 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.025 3.975 13 O -0.263 6.263 14 C 0.299 3.701 15 O -0.428 6.428 16 C -0.104 4.104 17 H 0.198 0.802 18 C -0.178 4.178 19 C 0.298 3.702 20 O -0.447 6.447 21 N -0.346 5.346 22 C 0.085 3.915 23 C -0.099 4.099 24 C -0.224 4.224 25 C -0.252 4.252 26 C -0.094 4.094 27 O -0.077 6.077 28 C -0.006 4.006 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.176 0.824 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.183 0.817 44 H 0.259 0.741 45 H 0.114 0.886 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.952 -1.418 -25.853 25.909 hybrid contribution 0.928 -0.296 1.143 1.502 sum -0.024 -1.714 -24.710 24.769 Atomic orbital electron populations 1.21608 0.96700 0.98729 1.00509 1.18267 0.93914 0.93086 0.88737 1.21633 0.97471 0.98139 1.00493 1.21177 1.32389 1.12395 0.91270 0.93406 1.25494 0.95062 0.95576 1.01110 1.69928 1.36671 1.23120 1.23862 0.85747 0.78573 0.78849 0.79236 1.20274 1.20724 1.19895 1.23217 0.97194 0.95327 0.81745 1.86491 1.69069 1.55698 1.15010 1.24132 0.76926 0.82236 0.86791 1.90629 1.36574 1.27252 1.88368 1.22135 1.06129 0.94714 0.87402 0.80225 1.22406 0.95816 0.97178 1.02369 1.21424 0.88226 0.80939 0.79652 1.90698 1.38055 1.51122 1.64821 1.48415 1.20909 1.18064 1.47162 1.19689 0.91270 1.00705 0.79870 1.22820 0.99165 0.94511 0.93408 1.21876 1.05304 0.99359 0.95879 1.22157 1.03696 1.01519 0.97796 1.24859 1.02633 0.93526 0.88364 1.84024 1.56276 1.46661 1.20741 1.22309 0.84927 0.97914 0.95445 0.92046 0.94326 0.95984 0.96642 0.94521 0.91869 0.92852 0.93890 0.92870 0.82449 0.87919 0.87783 0.86524 0.84539 0.81735 0.74144 0.88604 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.11 71.98 0.58 -4.81 16 2 C 0.06 2.87 0.58 -52.93 -0.03 2.84 16 3 C -0.12 -5.65 8.10 71.98 0.58 -5.07 16 4 C -0.53 -28.33 8.01 25.60 0.21 -28.12 16 5 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 6 C 0.03 1.47 5.15 84.66 0.44 1.90 16 7 N -0.90 -48.36 9.35 21.45 0.20 -48.16 16 8 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.10 4.19 4.26 71.98 0.31 4.50 16 13 O -0.35 -12.28 8.86 -51.41 -0.46 -12.74 16 14 C 0.46 13.48 7.20 71.24 0.51 13.99 16 15 O -0.54 -18.97 15.28 21.97 0.34 -18.64 16 16 C -0.08 -1.49 3.66 -10.48 -0.04 -1.53 16 17 H 0.18 1.68 8.14 -2.39 -0.02 1.66 16 18 C -0.14 -2.65 6.40 30.59 0.20 -2.46 16 19 C 0.51 13.16 8.02 87.90 0.71 13.86 16 20 O -0.57 -19.29 17.59 -3.01 -0.05 -19.34 16 21 N -0.61 -12.95 2.92 -822.33 -2.40 -15.34 16 22 C 0.21 4.04 6.46 85.63 0.55 4.60 16 23 C -0.05 -0.96 6.90 24.83 0.17 -0.79 16 24 C -0.20 -4.28 10.81 22.19 0.24 -4.04 16 25 C -0.23 -3.70 10.91 22.19 0.24 -3.46 16 26 C -0.03 -0.34 12.09 66.97 0.81 0.47 16 27 O -0.18 -3.20 10.65 -2.61 -0.03 -3.23 16 28 C 0.12 1.82 6.68 86.83 0.58 2.40 16 29 H 0.06 3.10 6.08 -2.39 -0.01 3.09 16 30 H 0.04 1.55 7.68 -2.39 -0.02 1.54 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.04 1.53 7.68 -2.39 -0.02 1.52 16 34 H 0.06 3.26 6.06 -2.39 -0.01 3.25 16 35 H 0.26 13.55 8.31 -92.70 -0.77 12.78 16 36 H 0.04 1.91 8.13 -2.38 -0.02 1.89 16 37 H 0.05 2.27 8.13 -2.39 -0.02 2.26 16 38 H 0.16 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.10 2.38 7.89 -2.39 -0.02 2.36 16 40 H 0.10 2.22 7.93 -2.38 -0.02 2.20 16 41 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.24 0.86 8.06 -2.91 -0.02 0.84 16 45 H 0.10 1.68 7.02 -2.39 -0.02 1.67 16 46 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.90 384.53 6.67 -64.24 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.98 Total: 14.48 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 6.05 Total: -5.70 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -2.20 Total: -63.50 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.20 Total: -53.94 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -70.90 6.67 -64.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184826067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.649 kcal (2) G-P(sol) polarization free energy of solvation -70.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds