Wall clock time and date at job start Tue Mar 31 2020 19:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47322 * 2 1 4 4 H 1.08992 * 109.47367 * 305.12126 * 3 2 1 5 5 C 1.52998 * 109.47123 * 65.12505 * 3 2 1 6 6 C 1.53000 * 109.47159 * 185.11885 * 3 2 1 7 7 H 1.09004 * 109.47361 * 57.67234 * 6 3 2 8 8 N 1.46500 * 109.47447 * 297.67479 * 6 3 2 9 9 C 1.34779 * 120.00088 * 154.99951 * 8 6 3 10 10 O 1.21591 * 119.99781 * 359.97438 * 9 8 6 11 11 C 1.47532 * 119.99996 * 179.97438 * 9 8 6 12 12 C 1.39670 * 120.19422 * 0.02562 * 11 9 8 13 13 C 1.37831 * 119.91670 * 179.97438 * 12 11 9 14 14 C 1.38571 * 120.32465 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.39978 * 0.02641 * 14 13 12 16 16 C 1.38830 * 120.07230 * 359.67187 * 15 14 13 17 17 O 1.35520 * 120.15976 * 180.29582 * 16 15 14 18 18 C 1.34808 * 117.00451 * 354.52418 * 17 16 15 19 19 H 1.08003 * 119.99710 * 4.71514 * 18 17 16 20 20 C 1.38698 * 120.00286 * 184.71703 * 18 17 16 21 21 N 1.31520 * 119.99870 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99995 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47196 * 89.99944 * 22 20 18 24 24 H 1.48497 * 109.47482 * 209.99844 * 22 20 18 25 25 H 1.48498 * 109.47242 * 330.00223 * 22 20 18 26 26 C 1.50705 * 109.47262 * 177.67007 * 6 3 2 27 27 O 1.20824 * 119.99787 * 98.98589 * 26 6 3 28 28 O 1.34231 * 120.00122 * 278.98395 * 26 6 3 29 29 C 1.45194 * 116.99674 * 179.97438 * 28 26 6 30 30 H 1.08997 * 109.46771 * 300.00327 * 1 2 3 31 31 H 1.09008 * 109.46743 * 59.99747 * 1 2 3 32 32 H 1.08991 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47257 * 240.00134 * 2 1 3 34 34 H 1.08999 * 109.47271 * 119.99986 * 2 1 3 35 35 H 1.09000 * 109.47517 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47458 * 59.99491 * 5 3 2 37 37 H 1.09003 * 109.47167 * 299.99804 * 5 3 2 38 38 H 0.96998 * 119.99497 * 334.99243 * 8 6 3 39 39 H 1.08002 * 120.04601 * 0.02569 * 12 11 9 40 40 H 1.07996 * 119.83744 * 179.97438 * 13 12 11 41 41 H 1.08002 * 119.80098 * 179.97438 * 14 13 12 42 42 H 1.08000 * 119.96065 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99777 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.47105 * 299.99888 * 29 28 26 45 45 H 1.08994 * 109.47479 * 60.00356 * 29 28 26 46 46 H 1.09010 * 109.46648 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 -0.8405 5 6 1.6380 2.1256 1.3087 6 6 3.5646 1.4444 -0.1287 7 1 3.8529 0.9213 -1.0406 8 7 4.1533 0.7674 1.0294 9 6 5.3721 0.2003 0.9309 10 8 5.9827 0.2503 -0.1194 11 6 5.9652 -0.4809 2.0974 12 6 5.2671 -0.5412 3.3056 13 6 5.8264 -1.1795 4.3916 14 6 7.0791 -1.7633 4.2912 15 6 7.7806 -1.7117 3.1036 16 6 7.2303 -1.0784 1.9975 17 8 7.9150 -1.0318 0.8289 18 6 9.1719 -1.5191 0.8361 19 1 9.5628 -1.9915 1.7252 20 6 9.9631 -1.4137 -0.2982 21 7 11.1895 -1.8886 -0.2910 22 14 9.2867 -0.5972 -1.8361 23 1 9.5843 0.8572 -1.7961 24 1 9.9212 -1.1993 -3.0361 25 1 7.8170 -0.8001 -1.8988 26 6 4.0622 2.8657 -0.1863 27 8 4.5022 3.3925 0.8081 28 8 4.0165 3.5465 -1.3422 29 6 4.5122 4.9111 -1.3235 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 2.0017 3.1531 1.3089 36 1 2.0742 1.5859 2.1492 37 1 0.5518 2.1243 1.4005 38 1 3.6660 0.7273 1.8672 39 1 4.2899 -0.0888 3.3886 40 1 5.2857 -1.2250 5.3253 41 1 7.5096 -2.2610 5.1476 42 1 8.7566 -2.1687 3.0334 43 1 11.7429 -1.8146 -1.0842 44 1 3.9302 5.4994 -0.6139 45 1 5.5601 4.9130 -1.0237 46 1 4.4178 5.3456 -2.3188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194103802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:37 Heat of formation + Delta-G solvation = -125.079425 kcal Electronic energy + Delta-G solvation = -30060.933070 eV Core-core repulsion = 25916.762734 eV Total energy + Delta-G solvation = -4144.170336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.89266 -39.68898 -38.53550 -37.09200 -36.52854 -36.26949 -33.51645 -32.46073 -31.14384 -29.87050 -29.21479 -28.48845 -26.86851 -25.30271 -24.39366 -23.33918 -21.53497 -21.07666 -20.47977 -19.74466 -18.14256 -17.91929 -17.54582 -16.85995 -16.61880 -16.25637 -15.62503 -15.02888 -14.84739 -14.61251 -14.38238 -14.24725 -14.07531 -13.85506 -13.73413 -13.50111 -13.21226 -13.12245 -12.89912 -12.43071 -12.36828 -12.24937 -12.18128 -12.05660 -11.73567 -11.42783 -11.32309 -11.26675 -11.05982 -10.86252 -10.80433 -10.78155 -10.72763 -10.44476 -10.06330 -9.66324 -9.17130 -8.97131 -8.89556 -8.40347 -7.49390 -6.48028 -4.12884 1.53633 2.18163 2.21156 2.57349 3.30531 3.37548 3.40432 3.56844 3.64974 4.33831 4.34569 4.46714 4.53935 4.58126 4.72092 4.92395 5.03541 5.04401 5.08447 5.12809 5.13724 5.22916 5.27279 5.36549 5.38393 5.45582 5.50290 5.62720 5.64382 5.71795 5.74820 5.84255 5.91404 6.02514 6.06957 6.11675 6.35027 6.36086 6.50088 6.57164 6.81113 6.98958 7.13657 7.46846 7.64492 7.76833 7.82429 7.93953 8.73734 8.87526 9.50347 10.57067 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.004494 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.176223 B = 6228.977988 C = 7715.618011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.091 4.091 4 H 0.094 0.906 5 C -0.156 4.156 6 C 0.164 3.836 7 H 0.123 0.877 8 N -0.717 5.717 9 C 0.565 3.435 10 O -0.514 6.514 11 C -0.225 4.225 12 C -0.038 4.038 13 C -0.220 4.220 14 C -0.049 4.049 15 C -0.226 4.226 16 C 0.202 3.798 17 O -0.165 6.165 18 C -0.396 4.396 19 H 0.109 0.891 20 C 0.072 3.928 21 N -0.869 5.869 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.239 1.239 26 C 0.451 3.549 27 O -0.495 6.495 28 O -0.360 6.360 29 C 0.035 3.965 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.401 0.599 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.282 0.718 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.764 7.063 2.201 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.113 0.887 5 C -0.213 4.213 6 C 0.056 3.944 7 H 0.141 0.859 8 N -0.374 5.374 9 C 0.356 3.644 10 O -0.390 6.390 11 C -0.230 4.230 12 C -0.057 4.057 13 C -0.239 4.239 14 C -0.068 4.068 15 C -0.245 4.245 16 C 0.144 3.856 17 O -0.065 6.065 18 C -0.471 4.471 19 H 0.126 0.874 20 C -0.133 4.133 21 N -0.504 5.504 22 Si 0.724 3.276 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.161 1.161 26 C 0.291 3.709 27 O -0.381 6.381 28 O -0.276 6.276 29 C -0.059 4.059 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.239 0.761 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.967 7.324 1.332 21.310 hybrid contribution 0.046 0.558 -0.004 0.560 sum -19.921 7.882 1.327 21.465 Atomic orbital electron populations 1.21813 0.95365 1.01870 1.01884 1.21560 0.96014 0.94629 1.03372 1.21415 0.90741 0.98594 1.00240 0.88748 1.21970 1.02049 1.00721 0.96583 1.20401 0.93730 0.86634 0.93628 0.85919 1.45740 1.20135 1.57461 1.14088 1.18297 0.79882 0.77752 0.88464 1.90867 1.59980 1.58644 1.29483 1.18722 0.96898 1.12505 0.94855 1.20746 0.97402 0.95927 0.91605 1.20535 0.97753 1.07024 0.98594 1.20974 0.93781 0.95557 0.96484 1.21282 1.02975 1.07015 0.93243 1.18997 0.89947 0.90883 0.85729 1.83770 1.26455 1.69148 1.27162 1.20931 0.85718 1.37790 1.02673 0.87396 1.24485 0.94183 0.95739 0.98917 1.69639 1.07038 1.42904 1.30862 0.86209 0.82021 0.79406 0.79929 1.20011 1.21177 1.16138 1.24501 0.75560 0.89698 0.81103 1.90654 1.41758 1.69565 1.36148 1.86502 1.76439 1.27970 1.36654 1.23242 0.99976 0.79312 1.03331 0.92442 0.92683 0.92501 0.91137 0.91133 0.92374 0.92160 0.91311 0.76102 0.86946 0.86927 0.86766 0.84368 0.90815 0.92114 0.91818 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -1.00 5.20 -26.73 -0.14 -1.14 16 3 C -0.09 -0.85 2.21 -90.62 -0.20 -1.05 16 4 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.16 -1.34 8.53 37.16 0.32 -1.02 16 6 C 0.16 2.24 2.20 -69.08 -0.15 2.09 16 7 H 0.12 1.81 7.58 -51.93 -0.39 1.41 16 8 N -0.72 -10.90 3.97 -55.97 -0.22 -11.13 16 9 C 0.57 11.59 7.72 -12.47 -0.10 11.50 16 10 O -0.51 -12.82 14.83 -16.57 -0.25 -13.06 16 11 C -0.23 -4.63 5.89 -104.81 -0.62 -5.25 16 12 C -0.04 -0.62 9.54 -39.20 -0.37 -0.99 16 13 C -0.22 -3.43 10.02 -39.61 -0.40 -3.83 16 14 C -0.05 -0.85 10.03 -39.54 -0.40 -1.24 16 15 C -0.23 -4.79 9.16 -39.44 -0.36 -5.16 16 16 C 0.20 4.82 6.66 -38.60 -0.26 4.56 16 17 O -0.17 -4.58 6.67 -21.04 -0.14 -4.72 16 18 C -0.40 -11.41 9.95 30.90 0.31 -11.10 16 19 H 0.11 3.09 5.44 -52.48 -0.29 2.80 16 20 C 0.07 2.09 5.49 -17.52 -0.10 2.00 16 21 N -0.87 -25.37 13.96 55.48 0.77 -24.60 16 22 Si 0.90 23.42 28.62 -169.99 -4.86 18.55 16 23 H -0.27 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.24 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.45 7.03 6.14 36.01 0.22 7.25 16 27 O -0.50 -8.92 15.96 -18.75 -0.30 -9.22 16 28 O -0.36 -5.06 10.57 -39.26 -0.41 -5.47 16 29 C 0.04 0.39 10.55 101.05 1.07 1.46 16 30 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.07 0.63 7.77 -51.93 -0.40 0.22 16 35 H 0.06 0.58 7.03 -51.93 -0.37 0.22 16 36 H 0.06 0.51 6.40 -51.93 -0.33 0.18 16 37 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 38 H 0.40 5.00 4.70 -40.82 -0.19 4.80 16 39 H 0.11 1.39 6.40 -52.49 -0.34 1.06 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.14 3.04 5.64 -52.49 -0.30 2.74 16 43 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 46 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -34.93 380.34 -6.72 -41.65 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.22 Total: 4.83 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.82 Total: -2.58 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.55 Total: -35.72 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.10 Total: -32.47 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.86 Total: 18.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.93 -6.72 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194103802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.429 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds