Wall clock time and date at job start Tue Mar 31 2020 19:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47322 * 2 1 4 4 H 1.08992 * 109.47367 * 305.12126 * 3 2 1 5 5 C 1.52998 * 109.47123 * 65.12505 * 3 2 1 6 6 C 1.53000 * 109.47159 * 185.11885 * 3 2 1 7 7 H 1.09004 * 109.47361 * 57.67234 * 6 3 2 8 8 N 1.46500 * 109.47447 * 297.67479 * 6 3 2 9 9 C 1.34779 * 120.00088 * 154.99951 * 8 6 3 10 10 O 1.21591 * 119.99781 * 359.97438 * 9 8 6 11 11 C 1.47532 * 119.99996 * 179.97438 * 9 8 6 12 12 C 1.39670 * 120.19422 * 0.02562 * 11 9 8 13 13 C 1.37831 * 119.91670 * 179.97438 * 12 11 9 14 14 C 1.38571 * 120.32465 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.39978 * 0.02641 * 14 13 12 16 16 C 1.38830 * 120.07230 * 359.67187 * 15 14 13 17 17 O 1.35520 * 120.15976 * 180.29582 * 16 15 14 18 18 C 1.34808 * 117.00451 * 354.52418 * 17 16 15 19 19 H 1.08003 * 119.99710 * 4.71514 * 18 17 16 20 20 C 1.38698 * 120.00286 * 184.71703 * 18 17 16 21 21 N 1.31520 * 119.99870 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99995 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47196 * 89.99944 * 22 20 18 24 24 H 1.48497 * 109.47482 * 209.99844 * 22 20 18 25 25 H 1.48498 * 109.47242 * 330.00223 * 22 20 18 26 26 C 1.50705 * 109.47262 * 177.67007 * 6 3 2 27 27 O 1.20824 * 119.99787 * 98.98589 * 26 6 3 28 28 O 1.34231 * 120.00122 * 278.98395 * 26 6 3 29 29 C 1.45194 * 116.99674 * 179.97438 * 28 26 6 30 30 H 1.08997 * 109.46771 * 300.00327 * 1 2 3 31 31 H 1.09008 * 109.46743 * 59.99747 * 1 2 3 32 32 H 1.08991 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47257 * 240.00134 * 2 1 3 34 34 H 1.08999 * 109.47271 * 119.99986 * 2 1 3 35 35 H 1.09000 * 109.47517 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47458 * 59.99491 * 5 3 2 37 37 H 1.09003 * 109.47167 * 299.99804 * 5 3 2 38 38 H 0.96998 * 119.99497 * 334.99243 * 8 6 3 39 39 H 1.08002 * 120.04601 * 0.02569 * 12 11 9 40 40 H 1.07996 * 119.83744 * 179.97438 * 13 12 11 41 41 H 1.08002 * 119.80098 * 179.97438 * 14 13 12 42 42 H 1.08000 * 119.96065 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99777 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.47105 * 299.99888 * 29 28 26 45 45 H 1.08994 * 109.47479 * 60.00356 * 29 28 26 46 46 H 1.09010 * 109.46648 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 -0.8405 5 6 1.6380 2.1256 1.3087 6 6 3.5646 1.4444 -0.1287 7 1 3.8529 0.9213 -1.0406 8 7 4.1533 0.7674 1.0294 9 6 5.3721 0.2003 0.9309 10 8 5.9827 0.2503 -0.1194 11 6 5.9652 -0.4809 2.0974 12 6 5.2671 -0.5412 3.3056 13 6 5.8264 -1.1795 4.3916 14 6 7.0791 -1.7633 4.2912 15 6 7.7806 -1.7117 3.1036 16 6 7.2303 -1.0784 1.9975 17 8 7.9150 -1.0318 0.8289 18 6 9.1719 -1.5191 0.8361 19 1 9.5628 -1.9915 1.7252 20 6 9.9631 -1.4137 -0.2982 21 7 11.1895 -1.8886 -0.2910 22 14 9.2867 -0.5972 -1.8361 23 1 9.5843 0.8572 -1.7961 24 1 9.9212 -1.1993 -3.0361 25 1 7.8170 -0.8001 -1.8988 26 6 4.0622 2.8657 -0.1863 27 8 4.5022 3.3925 0.8081 28 8 4.0165 3.5465 -1.3422 29 6 4.5122 4.9111 -1.3235 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 2.0017 3.1531 1.3089 36 1 2.0742 1.5859 2.1492 37 1 0.5518 2.1243 1.4005 38 1 3.6660 0.7273 1.8672 39 1 4.2899 -0.0888 3.3886 40 1 5.2857 -1.2250 5.3253 41 1 7.5096 -2.2610 5.1476 42 1 8.7566 -2.1687 3.0334 43 1 11.7429 -1.8146 -1.0842 44 1 3.9302 5.4994 -0.6139 45 1 5.5601 4.9130 -1.0237 46 1 4.4178 5.3456 -2.3188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194103802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:36 Heat of formation + Delta-G solvation = -147.110435 kcal Electronic energy + Delta-G solvation = -30061.888406 eV Core-core repulsion = 25916.762734 eV Total energy + Delta-G solvation = -4145.125672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14242 -41.25147 -40.03384 -38.33240 -38.12136 -37.42986 -34.78786 -34.52417 -32.47279 -30.90259 -30.82246 -29.40751 -27.88360 -27.23861 -25.20230 -24.78993 -23.12527 -22.22781 -21.80385 -20.80978 -19.85952 -19.64702 -18.77963 -18.19690 -18.07209 -17.45560 -16.98582 -16.44983 -16.12906 -16.06571 -15.84344 -15.55613 -15.46895 -15.31142 -15.17682 -14.68366 -14.50887 -14.26004 -14.19744 -14.12129 -14.04440 -13.21903 -13.17757 -12.94296 -12.89899 -12.84203 -12.62909 -12.46598 -12.41628 -12.21534 -12.05176 -11.89358 -11.81249 -11.57984 -11.52300 -11.46577 -10.99717 -10.86049 -10.37823 -9.89841 -9.17823 -8.60246 -6.28725 -0.00298 0.62664 0.98955 1.21216 1.26829 1.44118 1.54564 1.97771 2.17380 2.26592 2.73426 2.98371 3.13925 3.42442 3.62324 3.75713 3.85770 3.98362 4.02160 4.20381 4.21950 4.23073 4.29885 4.43327 4.47573 4.55114 4.58101 4.59790 4.67735 4.75330 4.77915 4.98173 5.02386 5.06758 5.12357 5.21243 5.25389 5.26094 5.28248 5.41997 5.45254 5.55109 5.59033 5.67074 5.81413 6.13096 6.43534 6.58480 6.76620 7.22054 7.56093 8.50287 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.004494 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.176223 B = 6228.977988 C = 7715.618011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.080 4.080 4 H 0.109 0.891 5 C -0.154 4.154 6 C 0.159 3.841 7 H 0.108 0.892 8 N -0.693 5.693 9 C 0.560 3.440 10 O -0.567 6.567 11 C -0.234 4.234 12 C -0.030 4.030 13 C -0.187 4.187 14 C -0.040 4.040 15 C -0.249 4.249 16 C 0.163 3.837 17 O -0.209 6.209 18 C -0.403 4.403 19 H 0.093 0.907 20 C 0.028 3.972 21 N -0.910 5.910 22 Si 0.952 3.048 23 H -0.282 1.282 24 H -0.262 1.262 25 H -0.264 1.264 26 C 0.449 3.551 27 O -0.525 6.525 28 O -0.364 6.364 29 C 0.028 3.972 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.417 0.583 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.286 0.714 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.136 7.869 4.637 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.098 4.098 4 H 0.127 0.873 5 C -0.211 4.211 6 C 0.051 3.949 7 H 0.126 0.874 8 N -0.350 5.350 9 C 0.351 3.649 10 O -0.446 6.446 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.205 4.205 14 C -0.058 4.058 15 C -0.269 4.269 16 C 0.110 3.890 17 O -0.113 6.113 18 C -0.479 4.479 19 H 0.111 0.889 20 C -0.173 4.173 21 N -0.550 5.550 22 Si 0.777 3.223 23 H -0.208 1.208 24 H -0.187 1.187 25 H -0.188 1.188 26 C 0.291 3.709 27 O -0.414 6.414 28 O -0.280 6.280 29 C -0.065 4.065 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.258 0.742 39 H 0.179 0.821 40 H 0.186 0.814 41 H 0.171 0.829 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.419 8.142 3.812 26.021 hybrid contribution 1.045 0.396 -0.413 1.191 sum -23.374 8.538 3.399 25.115 Atomic orbital electron populations 1.21787 0.93514 1.02394 1.02800 1.21561 0.97530 0.93619 1.02790 1.21456 0.87020 0.99708 1.01656 0.87257 1.21982 1.03753 0.99571 0.95819 1.20695 0.96568 0.85305 0.92308 0.87426 1.45469 1.18323 1.55886 1.15342 1.18488 0.80934 0.77736 0.87771 1.90849 1.61739 1.60677 1.31365 1.19174 0.96097 1.11823 0.96775 1.21324 0.98824 0.94962 0.89702 1.21238 0.96414 1.02812 1.00077 1.21468 0.94118 0.94482 0.95693 1.21338 1.02997 1.07933 0.94598 1.19741 0.91254 0.92193 0.85850 1.83759 1.26052 1.72209 1.29317 1.20909 0.86937 1.37794 1.02275 0.88929 1.25007 0.94602 0.96813 1.00836 1.69678 1.07857 1.45658 1.31757 0.85463 0.79816 0.78289 0.78777 1.20774 1.18657 1.18824 1.24806 0.74809 0.90270 0.81045 1.90631 1.43234 1.70418 1.37095 1.86492 1.76198 1.29396 1.35880 1.23547 0.98954 0.78097 1.05931 0.91191 0.92100 0.92239 0.92297 0.91296 0.93888 0.91781 0.88701 0.74231 0.82079 0.81386 0.82914 0.86555 0.90417 0.90796 0.93693 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 71.98 0.70 -0.78 16 2 C -0.12 -1.69 5.20 30.59 0.16 -1.53 16 3 C -0.08 -1.29 2.21 -10.79 -0.02 -1.32 16 4 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.15 -2.11 8.53 71.98 0.61 -1.49 16 6 C 0.16 4.23 2.20 44.25 0.10 4.33 16 7 H 0.11 3.25 7.58 -2.38 -0.02 3.24 16 8 N -0.69 -20.15 3.97 -449.26 -1.78 -21.93 16 9 C 0.56 23.14 7.72 86.69 0.67 23.81 16 10 O -0.57 -29.64 14.83 16.89 0.25 -29.39 16 11 C -0.23 -9.47 5.89 -19.99 -0.12 -9.58 16 12 C -0.03 -0.83 9.54 22.52 0.21 -0.62 16 13 C -0.19 -4.69 10.02 22.25 0.22 -4.47 16 14 C -0.04 -1.21 10.03 22.30 0.22 -0.99 16 15 C -0.25 -10.72 9.16 22.36 0.20 -10.51 16 16 C 0.16 8.02 6.66 22.90 0.15 8.17 16 17 O -0.21 -12.38 6.67 0.89 0.01 -12.37 16 18 C -0.40 -24.93 9.95 67.93 0.68 -24.26 16 19 H 0.09 5.77 5.44 -2.91 -0.02 5.75 16 20 C 0.03 1.71 5.49 84.85 0.47 2.18 16 21 N -0.91 -56.15 13.96 21.62 0.30 -55.85 16 22 Si 0.95 51.57 28.62 68.60 1.96 53.53 16 23 H -0.28 -15.27 7.11 99.48 0.71 -14.56 16 24 H -0.26 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.26 -15.23 7.11 99.48 0.71 -14.52 16 26 C 0.45 13.83 6.14 71.24 0.44 14.26 16 27 O -0.53 -18.72 15.96 21.97 0.35 -18.37 16 28 O -0.36 -10.06 10.57 -51.43 -0.54 -10.61 16 29 C 0.03 0.59 10.55 113.37 1.20 1.79 16 30 H 0.07 0.54 6.57 -2.39 -0.02 0.52 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.07 1.01 7.77 -2.39 -0.02 0.99 16 35 H 0.04 0.74 7.03 -2.39 -0.02 0.73 16 36 H 0.06 0.81 6.40 -2.39 -0.02 0.80 16 37 H 0.09 0.83 6.57 -2.39 -0.02 0.82 16 38 H 0.42 9.02 4.70 -92.71 -0.44 8.58 16 39 H 0.16 2.92 6.40 -2.91 -0.02 2.90 16 40 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 41 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 43 H 0.29 16.25 8.31 -92.71 -0.77 15.48 16 44 H 0.07 1.37 8.13 -2.38 -0.02 1.35 16 45 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 46 H 0.14 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -85.03 380.34 7.02 -78.01 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.58 Total: 17.98 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 5.89 Total: -1.00 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.48 Total: -77.78 kcal Atomic # 8 Polarization: -70.80 SS G_CDS: 0.06 Total: -70.74 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 1.96 Total: 53.53 kcal Total: -85.03 7.02 -78.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194103802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.099 kcal (2) G-P(sol) polarization free energy of solvation -85.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds