Wall clock time and date at job start Tue Mar 31 2020 18:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47196 * 2 1 4 4 C 1.53004 * 109.46692 * 239.99841 * 2 1 3 5 5 C 1.50694 * 109.47209 * 60.00591 * 4 2 1 6 6 H 1.08004 * 119.99975 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00360 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99529 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00423 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46667 * 60.00043 * 9 7 5 11 11 H 1.48497 * 109.47122 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47366 * 300.00468 * 9 7 5 13 13 C 1.52999 * 109.46995 * 120.00466 * 2 1 3 14 14 O 1.45204 * 109.46771 * 299.99726 * 13 2 1 15 15 C 1.34752 * 116.99850 * 180.02562 * 14 13 2 16 16 O 1.21498 * 120.00185 * 359.97438 * 15 14 13 17 17 C 1.47473 * 119.99783 * 180.02562 * 15 14 13 18 18 C 1.39794 * 120.08904 * 180.02562 * 17 15 14 19 19 C 1.37679 * 119.90398 * 180.29757 * 18 17 15 20 20 C 1.39021 * 120.09068 * 359.43972 * 19 18 17 21 21 O 1.35694 * 119.90499 * 180.28089 * 20 19 18 22 22 C 1.42899 * 117.00093 * 0.27444 * 21 20 19 23 23 C 1.50701 * 109.47130 * 179.97438 * 22 21 20 24 24 N 1.34781 * 119.99844 * 179.97438 * 23 22 21 25 25 O 1.21277 * 120.00219 * 0.02562 * 23 22 21 26 26 C 1.39012 * 120.18607 * 0.55640 * 20 19 18 27 27 C 1.37681 * 120.09185 * 359.72844 * 26 20 19 28 28 H 1.09001 * 109.46660 * 300.00145 * 1 2 3 29 29 H 1.09006 * 109.46795 * 59.99705 * 1 2 3 30 30 H 1.08993 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46710 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47286 * 299.99490 * 3 2 1 33 33 H 1.09001 * 109.47435 * 60.00329 * 3 2 1 34 34 H 1.09000 * 109.46726 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.47306 * 300.00069 * 4 2 1 36 36 H 0.97007 * 119.99569 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47020 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.47393 * 59.99323 * 13 2 1 39 39 H 1.08002 * 120.04587 * 0.02562 * 18 17 15 40 40 H 1.07998 * 119.95594 * 179.72119 * 19 18 17 41 41 H 1.09000 * 109.47555 * 299.99716 * 22 21 20 42 42 H 1.09000 * 109.46918 * 60.00321 * 22 21 20 43 43 H 0.96996 * 120.00229 * 0.02562 * 24 23 22 44 44 H 0.97005 * 119.99743 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.95324 * 179.69751 * 26 20 19 46 46 H 1.08005 * 120.04549 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6271 -1.5510 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 1.7421 1.7990 -5.2571 11 1 1.7430 -0.3014 -6.4697 12 1 -0.2370 0.3978 -5.2573 13 6 2.0400 -0.7214 1.2492 14 8 1.5560 -0.0369 2.4348 15 6 1.9185 -0.5486 3.6274 16 8 2.6193 -1.5399 3.6755 17 6 1.4635 0.0938 4.8745 18 6 1.8388 -0.4352 6.1128 19 6 1.4068 0.1641 7.2746 20 6 0.6081 1.3005 7.2174 21 8 0.1892 1.8915 8.3649 22 6 0.6117 1.2957 9.5931 23 6 0.0544 2.0829 10.7510 24 7 0.3234 1.7029 12.0159 25 8 -0.6369 3.0578 10.5448 26 6 0.2327 1.8299 5.9881 27 6 0.6555 1.2333 4.8215 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1299 -0.7217 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 2.8620 -1.8820 -4.7337 37 1 3.1300 -0.7218 1.2490 38 1 1.6766 -1.7490 1.2492 39 1 2.4631 -1.3153 6.1580 40 1 1.6926 -0.2465 8.2317 41 1 0.2485 0.2692 9.6429 42 1 1.7006 1.2988 9.6427 43 1 0.8760 0.9230 12.1809 44 1 -0.0356 2.2094 12.7612 45 1 -0.3919 2.7100 5.9480 46 1 0.3631 1.6450 3.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195058040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:01 Heat of formation + Delta-G solvation = -151.106691 kcal Electronic energy + Delta-G solvation = -27649.596479 eV Core-core repulsion = 23504.297516 eV Total energy + Delta-G solvation = -4145.298963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00134 -40.24779 -39.47770 -37.71074 -36.90025 -35.34785 -34.38347 -32.33620 -31.58402 -31.01669 -28.90008 -27.28252 -26.41791 -26.39273 -24.10832 -23.33240 -22.74889 -21.37280 -20.71961 -18.97367 -18.42125 -18.26953 -17.57001 -17.02601 -16.97075 -16.51071 -16.16445 -16.06487 -15.84877 -14.94041 -14.84831 -14.54958 -14.34589 -13.92769 -13.83413 -13.76776 -13.30508 -13.01640 -12.97462 -12.77318 -12.34466 -12.25724 -12.03760 -11.57707 -11.31430 -11.24075 -10.94166 -10.84678 -10.58552 -10.58126 -10.51573 -10.39258 -10.29015 -10.26861 -10.19417 -9.72094 -9.44897 -9.20690 -8.94427 -8.69487 -8.35365 -5.99807 -4.00963 0.53146 0.98283 1.91775 2.06387 2.53761 2.89900 3.20801 3.33845 3.38706 3.40765 3.53764 4.04308 4.26152 4.35550 4.42764 4.44403 4.45761 4.78651 4.90159 5.05543 5.20043 5.35795 5.51752 5.53322 5.63823 5.75288 5.81796 5.85081 6.03359 6.06180 6.12362 6.20942 6.23895 6.39321 6.52720 6.55217 6.64593 6.72520 6.81447 6.83287 7.12693 7.13056 7.15058 7.55617 7.61774 7.73773 7.95611 7.99194 8.40651 9.03119 9.62045 11.11748 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.001752 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.800687 B =15974.567381 C =16594.708491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.080 3.920 14 O -0.346 6.346 15 C 0.505 3.495 16 O -0.515 6.515 17 C -0.157 4.157 18 C -0.014 4.014 19 C -0.225 4.225 20 C 0.157 3.843 21 O -0.286 6.286 22 C 0.036 3.964 23 C 0.520 3.480 24 N -0.851 5.851 25 O -0.516 6.516 26 C -0.159 4.159 27 C -0.018 4.018 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.404 0.596 44 H 0.409 0.591 45 H 0.142 0.858 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 3.876 31.476 31.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.007 3.993 14 O -0.262 6.262 15 C 0.350 3.650 16 O -0.405 6.405 17 C -0.158 4.158 18 C -0.033 4.033 19 C -0.244 4.244 20 C 0.111 3.889 21 O -0.197 6.197 22 C -0.043 4.043 23 C 0.303 3.697 24 N -0.417 5.417 25 O -0.390 6.390 26 C -0.178 4.178 27 C -0.036 4.036 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.232 0.768 44 H 0.242 0.758 45 H 0.160 0.840 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.011 4.255 30.982 31.417 hybrid contribution 0.191 -0.265 -0.430 0.540 sum -2.820 3.991 30.552 30.940 Atomic orbital electron populations 1.21717 0.94800 1.00958 1.00830 1.20823 0.96170 0.96230 0.92684 1.21715 1.00050 0.95708 1.00830 1.19119 0.96378 0.95288 0.89406 1.21116 1.31263 1.12158 0.90310 0.92118 1.25013 0.95291 0.95087 0.99106 1.69961 1.36921 1.23029 1.23576 0.86671 0.79176 0.79757 0.82476 1.20268 1.21410 1.20274 1.23527 0.98977 0.95949 0.80813 1.86529 1.69365 1.55684 1.14613 1.20983 0.77481 0.81909 0.84613 1.90820 1.35961 1.25465 1.88287 1.19167 1.05775 0.99718 0.91155 1.21050 0.94588 0.97705 0.89930 1.21125 1.05051 0.98637 0.99577 1.19341 0.92335 0.91202 0.86013 1.86126 1.69968 1.52161 1.11483 1.22514 1.01050 0.97648 0.83059 1.20036 0.80575 0.84887 0.84234 1.43653 1.56430 1.34453 1.07203 1.90835 1.36793 1.26575 1.84790 1.20450 1.05217 1.03292 0.88836 1.21400 0.91508 0.91924 0.98795 0.94192 0.91561 0.93760 0.93762 0.91560 0.94191 0.96345 0.96345 0.92980 0.91542 0.91546 0.84064 0.84670 0.88381 0.88390 0.76770 0.75839 0.84003 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.08 37.16 0.30 -2.07 16 2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.28 16 3 C -0.13 -2.37 8.08 37.15 0.30 -2.07 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.72 7.65 -34.44 -0.26 -13.99 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.08 1.49 4.33 37.16 0.16 1.65 16 14 O -0.35 -5.71 8.12 -40.63 -0.33 -6.04 16 15 C 0.51 7.93 7.89 34.49 0.27 8.20 16 16 O -0.51 -9.32 16.13 -19.26 -0.31 -9.63 16 17 C -0.16 -1.93 5.87 -104.98 -0.62 -2.55 16 18 C -0.01 -0.15 9.59 -39.20 -0.38 -0.52 16 19 C -0.23 -1.77 9.01 -39.50 -0.36 -2.12 16 20 C 0.16 1.44 6.70 -39.00 -0.26 1.18 16 21 O -0.29 -2.63 9.66 -38.69 -0.37 -3.00 16 22 C 0.04 0.17 5.21 36.01 0.19 0.36 16 23 C 0.52 3.35 8.18 -10.98 -0.09 3.26 16 24 N -0.85 -1.58 8.87 31.22 0.28 -1.30 16 25 O -0.52 -6.21 17.34 -14.35 -0.25 -6.46 16 26 C -0.16 -1.55 9.97 -39.50 -0.39 -1.94 16 27 C -0.02 -0.19 9.61 -39.21 -0.38 -0.57 16 28 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 29 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 33 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.14 1.35 7.64 -52.49 -0.40 0.95 16 40 H 0.14 0.58 6.28 -52.49 -0.33 0.25 16 41 H 0.10 0.22 7.64 -51.93 -0.40 -0.18 16 42 H 0.10 0.22 7.66 -51.93 -0.40 -0.18 16 43 H 0.40 -0.64 8.83 -40.82 -0.36 -1.00 16 44 H 0.41 0.55 8.93 -40.82 -0.36 0.18 16 45 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 46 H 0.15 1.52 7.60 -52.48 -0.40 1.12 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -35.96 388.60 -7.76 -43.71 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.53 Total: -3.46 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.82 Total: -10.21 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 1.01 Total: -27.06 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -1.26 Total: -25.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.96 -7.76 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195058040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.394 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds