Wall clock time and date at job start Tue Mar 31 2020 18:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47196 * 2 1 4 4 C 1.53004 * 109.46692 * 239.99841 * 2 1 3 5 5 C 1.50694 * 109.47209 * 60.00591 * 4 2 1 6 6 H 1.08004 * 119.99975 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00360 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99529 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00423 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46667 * 60.00043 * 9 7 5 11 11 H 1.48497 * 109.47122 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47366 * 300.00468 * 9 7 5 13 13 C 1.52999 * 109.46995 * 120.00466 * 2 1 3 14 14 O 1.45204 * 109.46771 * 299.99726 * 13 2 1 15 15 C 1.34752 * 116.99850 * 180.02562 * 14 13 2 16 16 O 1.21498 * 120.00185 * 359.97438 * 15 14 13 17 17 C 1.47473 * 119.99783 * 180.02562 * 15 14 13 18 18 C 1.39794 * 120.08904 * 180.02562 * 17 15 14 19 19 C 1.37679 * 119.90398 * 180.29757 * 18 17 15 20 20 C 1.39021 * 120.09068 * 359.43972 * 19 18 17 21 21 O 1.35694 * 119.90499 * 180.28089 * 20 19 18 22 22 C 1.42899 * 117.00093 * 0.27444 * 21 20 19 23 23 C 1.50701 * 109.47130 * 179.97438 * 22 21 20 24 24 N 1.34781 * 119.99844 * 179.97438 * 23 22 21 25 25 O 1.21277 * 120.00219 * 0.02562 * 23 22 21 26 26 C 1.39012 * 120.18607 * 0.55640 * 20 19 18 27 27 C 1.37681 * 120.09185 * 359.72844 * 26 20 19 28 28 H 1.09001 * 109.46660 * 300.00145 * 1 2 3 29 29 H 1.09006 * 109.46795 * 59.99705 * 1 2 3 30 30 H 1.08993 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46710 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47286 * 299.99490 * 3 2 1 33 33 H 1.09001 * 109.47435 * 60.00329 * 3 2 1 34 34 H 1.09000 * 109.46726 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.47306 * 300.00069 * 4 2 1 36 36 H 0.97007 * 119.99569 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47020 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.47393 * 59.99323 * 13 2 1 39 39 H 1.08002 * 120.04587 * 0.02562 * 18 17 15 40 40 H 1.07998 * 119.95594 * 179.72119 * 19 18 17 41 41 H 1.09000 * 109.47555 * 299.99716 * 22 21 20 42 42 H 1.09000 * 109.46918 * 60.00321 * 22 21 20 43 43 H 0.96996 * 120.00229 * 0.02562 * 24 23 22 44 44 H 0.97005 * 119.99743 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.95324 * 179.69751 * 26 20 19 46 46 H 1.08005 * 120.04549 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6271 -1.5510 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 1.7421 1.7990 -5.2571 11 1 1.7430 -0.3014 -6.4697 12 1 -0.2370 0.3978 -5.2573 13 6 2.0400 -0.7214 1.2492 14 8 1.5560 -0.0369 2.4348 15 6 1.9185 -0.5486 3.6274 16 8 2.6193 -1.5399 3.6755 17 6 1.4635 0.0938 4.8745 18 6 1.8388 -0.4352 6.1128 19 6 1.4068 0.1641 7.2746 20 6 0.6081 1.3005 7.2174 21 8 0.1892 1.8915 8.3649 22 6 0.6117 1.2957 9.5931 23 6 0.0544 2.0829 10.7510 24 7 0.3234 1.7029 12.0159 25 8 -0.6369 3.0578 10.5448 26 6 0.2327 1.8299 5.9881 27 6 0.6555 1.2333 4.8215 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1299 -0.7217 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 2.8620 -1.8820 -4.7337 37 1 3.1300 -0.7218 1.2490 38 1 1.6766 -1.7490 1.2492 39 1 2.4631 -1.3153 6.1580 40 1 1.6926 -0.2465 8.2317 41 1 0.2485 0.2692 9.6429 42 1 1.7006 1.2988 9.6427 43 1 0.8760 0.9230 12.1809 44 1 -0.0356 2.2094 12.7612 45 1 -0.3919 2.7100 5.9480 46 1 0.3631 1.6450 3.8668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195058040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:00 Heat of formation + Delta-G solvation = -174.720718 kcal Electronic energy + Delta-G solvation = -27650.620460 eV Core-core repulsion = 23504.297516 eV Total energy + Delta-G solvation = -4146.322944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79213 -41.24536 -40.15192 -38.86112 -38.02589 -36.84839 -34.78470 -34.39884 -32.28481 -31.80918 -29.47724 -29.17133 -27.94386 -27.89823 -25.44991 -24.39268 -23.96171 -22.01435 -21.62577 -19.95923 -19.54432 -19.06104 -18.42029 -18.32672 -17.76459 -17.47357 -17.36616 -17.30615 -16.60110 -16.45406 -15.70412 -15.46520 -15.25810 -15.23824 -14.99809 -14.77586 -14.49776 -14.25483 -14.09106 -13.93089 -13.65206 -13.49641 -13.45735 -12.94185 -12.75724 -12.64317 -12.29986 -12.24588 -12.15422 -12.03369 -11.95204 -11.83306 -11.67834 -11.35316 -11.12882 -11.02473 -10.89477 -10.73927 -10.50682 -10.15817 -9.43626 -8.14423 -6.22213 -0.32842 0.27987 1.43601 1.45995 1.47497 1.49912 1.53029 1.60683 1.67217 2.45327 2.70449 2.80680 3.20043 3.60060 3.64146 3.83703 3.89787 3.94386 3.95150 4.07879 4.12456 4.15627 4.23569 4.32221 4.51322 4.53448 4.60944 4.75361 4.95416 5.00128 5.03430 5.09419 5.14433 5.14803 5.29840 5.43457 5.45237 5.47212 5.51033 5.52679 5.55105 5.75908 5.82484 5.88333 6.17238 6.29284 6.41343 6.70752 6.91279 7.26414 7.45287 8.97913 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.001752 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.800687 B =15974.567381 C =16594.708491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.055 4.055 3 C -0.119 4.119 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.072 0.928 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.090 3.910 14 O -0.341 6.341 15 C 0.504 3.496 16 O -0.547 6.547 17 C -0.182 4.182 18 C -0.016 4.016 19 C -0.210 4.210 20 C 0.165 3.835 21 O -0.308 6.308 22 C 0.026 3.974 23 C 0.516 3.484 24 N -0.826 5.826 25 O -0.585 6.585 26 C -0.169 4.169 27 C -0.017 4.017 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.067 0.933 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.145 0.855 40 H 0.178 0.822 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.424 0.576 44 H 0.414 0.586 45 H 0.150 0.850 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 4.784 33.947 34.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.177 4.177 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.192 1.192 13 C 0.017 3.983 14 O -0.257 6.257 15 C 0.352 3.648 16 O -0.439 6.439 17 C -0.183 4.183 18 C -0.034 4.034 19 C -0.228 4.228 20 C 0.118 3.882 21 O -0.220 6.220 22 C -0.051 4.051 23 C 0.300 3.700 24 N -0.393 5.393 25 O -0.464 6.464 26 C -0.187 4.187 27 C -0.036 4.036 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.162 0.838 40 H 0.196 0.804 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.256 0.744 44 H 0.246 0.754 45 H 0.167 0.833 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.639 5.141 33.519 34.105 hybrid contribution 0.405 -0.567 -0.946 1.175 sum -3.234 4.574 32.573 33.051 Atomic orbital electron populations 1.21649 0.93459 1.00886 1.01668 1.20637 0.97165 0.96575 0.91160 1.21647 0.99689 0.94655 1.01668 1.18976 0.94504 0.94324 0.91859 1.21512 1.30706 1.12239 0.90963 0.91022 1.25934 0.95574 0.95849 1.02648 1.70113 1.38594 1.24848 1.24226 0.85567 0.78949 0.78737 0.78200 1.19177 1.21523 1.19191 1.23137 0.98294 0.95406 0.81500 1.86509 1.69360 1.55352 1.14491 1.21651 0.76688 0.81534 0.84959 1.90800 1.37631 1.26997 1.88508 1.19101 1.08064 1.01069 0.90101 1.21195 0.94530 0.97866 0.89826 1.21446 1.03400 0.97479 1.00470 1.19443 0.91639 0.91124 0.86004 1.86111 1.70251 1.53061 1.12620 1.22928 1.03054 0.98516 0.80607 1.20447 0.79706 0.84121 0.85714 1.43506 1.55268 1.34553 1.05955 1.90813 1.40126 1.29599 1.85845 1.20585 1.05449 1.03655 0.89032 1.21380 0.91282 0.91483 0.99416 0.91394 0.92520 0.94345 0.94348 0.92519 0.91394 0.99189 0.99188 0.93093 0.92460 0.92463 0.83754 0.80448 0.85031 0.85046 0.74410 0.75367 0.83253 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.08 71.98 0.58 -3.85 16 2 C -0.06 -2.24 0.61 -52.18 -0.03 -2.28 16 3 C -0.12 -4.43 8.08 71.98 0.58 -3.84 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.52 -28.15 7.65 25.60 0.20 -27.96 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.67 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 9 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 C 0.09 3.43 4.33 71.98 0.31 3.74 16 14 O -0.34 -11.16 8.12 -56.62 -0.46 -11.62 16 15 C 0.50 15.78 7.89 70.26 0.55 16.34 16 16 O -0.55 -20.10 16.13 19.84 0.32 -19.78 16 17 C -0.18 -4.28 5.87 -20.09 -0.12 -4.40 16 18 C -0.02 -0.29 9.59 22.51 0.22 -0.07 16 19 C -0.21 -2.50 9.01 22.33 0.20 -2.30 16 20 C 0.16 2.54 6.70 22.64 0.15 2.69 16 21 O -0.31 -4.85 9.66 -71.10 -0.69 -5.54 16 22 C 0.03 0.15 5.21 71.24 0.37 0.52 16 23 C 0.52 5.52 8.18 87.66 0.72 6.23 16 24 N -0.83 -0.72 8.87 -173.53 -1.54 -2.26 16 25 O -0.58 -13.82 17.34 16.02 0.28 -13.55 16 26 C -0.17 -2.97 9.97 22.32 0.22 -2.75 16 27 C -0.02 -0.35 9.61 22.51 0.22 -0.13 16 28 H 0.07 2.12 7.68 -2.39 -0.02 2.11 16 29 H 0.06 2.19 6.62 -2.38 -0.02 2.18 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 2.19 6.62 -2.39 -0.02 2.18 16 33 H 0.07 2.12 7.68 -2.39 -0.02 2.11 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.14 2.50 7.64 -2.91 -0.02 2.48 16 40 H 0.18 0.51 6.28 -2.91 -0.02 0.49 16 41 H 0.13 -0.10 7.64 -2.39 -0.02 -0.12 16 42 H 0.13 -0.10 7.66 -2.39 -0.02 -0.11 16 43 H 0.42 -2.99 8.83 -92.71 -0.82 -3.81 16 44 H 0.41 0.20 8.93 -92.70 -0.83 -0.63 16 45 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.15 2.88 7.60 -2.91 -0.02 2.86 16 Total: -1.00 -81.79 388.60 4.36 -77.43 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -0.62 Total: 1.61 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.75 Total: -15.54 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -1.25 Total: -58.98 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.55 Total: -50.49 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -81.79 4.36 -77.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195058040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.287 kcal (2) G-P(sol) polarization free energy of solvation -81.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds