Wall clock time and date at job start Tue Mar 31 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46912 * 2 1 4 4 C 1.53004 * 109.47070 * 240.00173 * 2 1 3 5 5 C 1.50703 * 109.46875 * 59.99642 * 4 2 1 6 6 H 1.07995 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99811 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99665 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99719 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47074 * 90.00103 * 9 7 5 11 11 H 1.48502 * 109.46889 * 209.99915 * 9 7 5 12 12 H 1.48500 * 109.47593 * 329.99967 * 9 7 5 13 13 C 1.53000 * 109.47318 * 120.00251 * 2 1 3 14 14 O 1.45199 * 109.47034 * 300.00081 * 13 2 1 15 15 C 1.34709 * 117.00097 * 180.02562 * 14 13 2 16 16 O 1.21471 * 119.99772 * 359.97438 * 15 14 13 17 17 C 1.47744 * 120.00102 * 180.02562 * 15 14 13 18 18 C 1.39656 * 120.12440 * 359.97115 * 17 15 14 19 19 C 1.37947 * 119.96118 * 180.02562 * 18 17 15 20 20 C 1.38296 * 120.21165 * 359.72196 * 19 18 17 21 21 C 1.38817 * 120.24942 * 0.55764 * 20 19 18 22 22 O 1.35910 * 119.98516 * 179.72160 * 21 20 19 23 23 C 1.42899 * 116.99557 * 359.72179 * 22 21 20 24 24 C 1.50702 * 109.46876 * 179.97438 * 23 22 21 25 25 N 1.34777 * 119.99928 * 179.72354 * 24 23 22 26 26 O 1.21283 * 120.00262 * 0.02562 * 24 23 22 27 27 C 1.38485 * 120.03612 * 359.44408 * 21 20 19 28 28 H 1.08999 * 109.47060 * 299.99313 * 1 2 3 29 29 H 1.09001 * 109.47459 * 59.99707 * 1 2 3 30 30 H 1.09004 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46764 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47066 * 299.99973 * 3 2 1 33 33 H 1.08999 * 109.46697 * 60.00465 * 3 2 1 34 34 H 1.08994 * 109.47154 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.46879 * 300.00040 * 4 2 1 36 36 H 0.97002 * 119.99364 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47383 * 179.97438 * 13 2 1 38 38 H 1.09004 * 109.47176 * 59.99626 * 13 2 1 39 39 H 1.08003 * 120.01631 * 0.02562 * 18 17 15 40 40 H 1.07996 * 119.89035 * 179.97438 * 19 18 17 41 41 H 1.07994 * 119.87423 * 180.27257 * 20 19 18 42 42 H 1.09004 * 109.47206 * 60.00261 * 23 22 21 43 43 H 1.08994 * 109.47548 * 299.99917 * 23 22 21 44 44 H 0.96999 * 120.00047 * 180.27521 * 25 24 23 45 45 H 0.97000 * 120.00317 * 0.28382 * 25 24 23 46 46 H 1.08000 * 120.11143 * 180.25383 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4330 0.1388 -4.8057 9 14 2.9451 -2.0002 -3.9034 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9073 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 8 1.5561 -0.0369 2.4348 15 6 1.9185 -0.5485 3.6271 16 8 2.6193 -1.5395 3.6750 17 6 1.4627 0.0951 4.8764 18 6 0.6565 1.2343 4.8243 19 6 0.2333 1.8329 5.9929 20 6 0.6000 1.3051 7.2175 21 6 1.4058 0.1764 7.2795 22 8 1.7676 -0.3344 8.4859 23 6 1.2875 0.3445 9.6481 24 6 1.7858 -0.3605 10.8833 25 7 1.4609 0.1087 12.1043 26 8 2.4838 -1.3468 10.7787 27 6 1.8366 -0.4327 6.1129 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 -0.7216 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 1.6673 -0.1926 -5.6868 37 1 3.1300 -0.7217 1.2490 38 1 1.6767 -1.7490 1.2492 39 1 0.3646 1.6465 3.8696 40 1 -0.3897 2.7140 5.9513 41 1 0.2620 1.7755 8.1289 42 1 0.1975 0.3441 9.6448 43 1 1.6504 1.3722 9.6445 44 1 1.7850 -0.3427 12.8994 45 1 0.9029 0.8977 12.1881 46 1 2.4601 -1.3133 6.1597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195075407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:04 Heat of formation + Delta-G solvation = -145.288952 kcal Electronic energy + Delta-G solvation = -27787.379020 eV Core-core repulsion = 23642.332333 eV Total energy + Delta-G solvation = -4145.046687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99178 -40.30784 -39.47577 -37.71764 -37.05211 -35.47796 -34.36150 -32.31190 -31.70307 -30.93613 -28.67465 -27.98723 -26.66761 -26.45054 -24.50976 -22.83452 -22.53397 -21.65628 -20.63697 -19.05374 -18.28724 -18.14196 -17.29705 -17.05619 -16.92990 -16.80156 -16.36912 -16.18019 -15.92151 -15.60717 -14.81328 -14.39430 -14.23748 -14.12763 -13.89108 -13.74273 -13.47181 -13.07359 -13.02826 -12.50307 -12.42237 -12.26332 -12.23691 -11.61200 -11.49907 -11.34893 -11.05952 -10.98114 -10.59980 -10.57919 -10.55002 -10.40746 -10.37150 -10.34438 -9.85344 -9.74024 -9.53472 -9.45899 -8.99895 -8.68566 -8.53542 -6.04002 -4.01368 0.38889 1.02492 1.94661 2.05122 2.46258 2.75752 3.30114 3.31658 3.39696 3.43361 3.48307 4.06446 4.26323 4.37438 4.40976 4.42984 4.45612 4.66650 4.90314 4.98049 5.13790 5.27824 5.38363 5.42037 5.51304 5.70051 5.75186 5.89420 5.99857 6.04334 6.07589 6.09514 6.19505 6.26664 6.48170 6.53474 6.57052 6.67015 6.69986 6.86913 6.94917 7.06463 7.08972 7.20492 7.35074 7.58481 7.75627 7.86055 8.53311 9.00353 9.58200 11.08614 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.032167 B = 0.001862 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.242748 B =15035.283089 C =15703.862298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 C -0.127 4.127 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.077 3.923 14 O -0.341 6.341 15 C 0.503 3.497 16 O -0.505 6.505 17 C -0.078 4.078 18 C -0.094 4.094 19 C -0.092 4.092 20 C -0.180 4.180 21 C 0.114 3.886 22 O -0.288 6.288 23 C 0.039 3.961 24 C 0.519 3.481 25 N -0.851 5.851 26 O -0.514 6.514 27 C -0.085 4.085 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.409 0.591 45 H 0.403 0.597 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 6.613 33.236 34.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.041 4.041 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C 0.004 3.996 14 O -0.257 6.257 15 C 0.347 3.653 16 O -0.394 6.394 17 C -0.079 4.079 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.199 4.199 21 C 0.069 3.931 22 O -0.200 6.200 23 C -0.040 4.040 24 C 0.302 3.698 25 N -0.418 5.418 26 O -0.388 6.388 27 C -0.103 4.103 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.163 0.837 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.241 0.759 45 H 0.232 0.768 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.846 5.496 32.754 33.433 hybrid contribution 0.365 -0.557 0.186 0.692 sum -3.480 4.939 32.940 33.490 Atomic orbital electron populations 1.21735 0.94311 1.01077 1.01355 1.20594 0.96517 0.96267 0.91567 1.21729 0.99991 0.95386 1.01352 1.19629 0.96333 0.95571 0.92526 1.21034 1.31900 1.13417 0.88407 0.90214 1.24984 0.95693 0.96735 0.95955 1.69897 1.45869 1.40505 0.97869 0.86871 0.81340 0.83949 0.77686 1.20343 1.21423 1.19048 1.23563 0.99059 0.96008 0.80991 1.86523 1.69240 1.55521 1.14416 1.21004 0.77701 0.82003 0.84629 1.90841 1.35285 1.25093 1.88208 1.18927 1.01329 0.97420 0.90236 1.21516 0.95803 0.94086 0.99867 1.20958 0.99100 0.99730 0.91193 1.21459 1.01513 0.97290 0.99638 1.18686 0.96028 0.93506 0.84888 1.86179 1.70594 1.52205 1.11058 1.22457 1.00537 0.96886 0.84138 1.20052 0.80434 0.84584 0.84763 1.43650 1.56411 1.34128 1.07610 1.90845 1.36089 1.25333 1.86530 1.20443 1.00709 1.01041 0.88149 0.93975 0.90987 0.93779 0.93771 0.90992 0.93965 0.96338 0.96789 0.92765 0.91425 0.91436 0.83677 0.84586 0.84975 0.88625 0.88604 0.75865 0.76838 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.08 37.16 0.30 -2.05 16 2 C -0.05 -0.95 0.61 -154.50 -0.09 -1.05 16 3 C -0.13 -2.35 8.08 37.16 0.30 -2.05 16 4 C 0.00 -0.07 3.11 -27.88 -0.09 -0.16 16 5 C -0.51 -13.79 8.20 -34.44 -0.28 -14.07 16 6 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 9 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.08 1.36 4.33 37.16 0.16 1.52 16 14 O -0.34 -5.45 8.13 -40.52 -0.33 -5.78 16 15 C 0.50 7.85 7.90 34.62 0.27 8.13 16 16 O -0.50 -9.22 16.13 -19.24 -0.31 -9.53 16 17 C -0.08 -0.98 5.87 -105.00 -0.62 -1.59 16 18 C -0.09 -0.94 9.61 -39.16 -0.38 -1.32 16 19 C -0.09 -0.67 10.02 -39.67 -0.40 -1.07 16 20 C -0.18 -1.25 9.03 -39.35 -0.36 -1.61 16 21 C 0.11 1.12 6.68 -39.28 -0.26 0.86 16 22 O -0.29 -2.91 9.67 -39.37 -0.38 -3.29 16 23 C 0.04 0.20 5.22 36.01 0.19 0.39 16 24 C 0.52 3.57 8.18 -10.98 -0.09 3.48 16 25 N -0.85 -1.76 8.87 31.22 0.28 -1.48 16 26 O -0.51 -6.55 17.34 -14.35 -0.25 -6.80 16 27 C -0.08 -1.02 9.53 -39.00 -0.37 -1.39 16 28 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 29 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 33 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.15 1.38 7.61 -52.48 -0.40 0.98 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.44 6.28 -52.49 -0.33 0.11 16 42 H 0.10 0.22 7.64 -51.93 -0.40 -0.18 16 43 H 0.10 0.22 7.67 -51.93 -0.40 -0.18 16 44 H 0.41 0.65 8.93 -40.82 -0.36 0.29 16 45 H 0.40 -0.63 8.83 -40.82 -0.36 -0.99 16 46 H 0.15 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -36.56 385.06 -7.39 -43.95 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.49 Total: -3.18 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.81 Total: -10.17 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 1.05 Total: -27.94 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.27 Total: -25.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.56 -7.39 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195075407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.339 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds