Wall clock time and date at job start Tue Mar 31 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46912 * 2 1 4 4 C 1.53004 * 109.47070 * 240.00173 * 2 1 3 5 5 C 1.50703 * 109.46875 * 59.99642 * 4 2 1 6 6 H 1.07995 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99811 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99665 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99719 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47074 * 90.00103 * 9 7 5 11 11 H 1.48502 * 109.46889 * 209.99915 * 9 7 5 12 12 H 1.48500 * 109.47593 * 329.99967 * 9 7 5 13 13 C 1.53000 * 109.47318 * 120.00251 * 2 1 3 14 14 O 1.45199 * 109.47034 * 300.00081 * 13 2 1 15 15 C 1.34709 * 117.00097 * 180.02562 * 14 13 2 16 16 O 1.21471 * 119.99772 * 359.97438 * 15 14 13 17 17 C 1.47744 * 120.00102 * 180.02562 * 15 14 13 18 18 C 1.39656 * 120.12440 * 359.97115 * 17 15 14 19 19 C 1.37947 * 119.96118 * 180.02562 * 18 17 15 20 20 C 1.38296 * 120.21165 * 359.72196 * 19 18 17 21 21 C 1.38817 * 120.24942 * 0.55764 * 20 19 18 22 22 O 1.35910 * 119.98516 * 179.72160 * 21 20 19 23 23 C 1.42899 * 116.99557 * 359.72179 * 22 21 20 24 24 C 1.50702 * 109.46876 * 179.97438 * 23 22 21 25 25 N 1.34777 * 119.99928 * 179.72354 * 24 23 22 26 26 O 1.21283 * 120.00262 * 0.02562 * 24 23 22 27 27 C 1.38485 * 120.03612 * 359.44408 * 21 20 19 28 28 H 1.08999 * 109.47060 * 299.99313 * 1 2 3 29 29 H 1.09001 * 109.47459 * 59.99707 * 1 2 3 30 30 H 1.09004 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46764 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47066 * 299.99973 * 3 2 1 33 33 H 1.08999 * 109.46697 * 60.00465 * 3 2 1 34 34 H 1.08994 * 109.47154 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.46879 * 300.00040 * 4 2 1 36 36 H 0.97002 * 119.99364 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47383 * 179.97438 * 13 2 1 38 38 H 1.09004 * 109.47176 * 59.99626 * 13 2 1 39 39 H 1.08003 * 120.01631 * 0.02562 * 18 17 15 40 40 H 1.07996 * 119.89035 * 179.97438 * 19 18 17 41 41 H 1.07994 * 119.87423 * 180.27257 * 20 19 18 42 42 H 1.09004 * 109.47206 * 60.00261 * 23 22 21 43 43 H 1.08994 * 109.47548 * 299.99917 * 23 22 21 44 44 H 0.96999 * 120.00047 * 180.27521 * 25 24 23 45 45 H 0.97000 * 120.00317 * 0.28382 * 25 24 23 46 46 H 1.08000 * 120.11143 * 180.25383 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4330 0.1388 -4.8057 9 14 2.9451 -2.0002 -3.9034 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9073 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 8 1.5561 -0.0369 2.4348 15 6 1.9185 -0.5485 3.6271 16 8 2.6193 -1.5395 3.6750 17 6 1.4627 0.0951 4.8764 18 6 0.6565 1.2343 4.8243 19 6 0.2333 1.8329 5.9929 20 6 0.6000 1.3051 7.2175 21 6 1.4058 0.1764 7.2795 22 8 1.7676 -0.3344 8.4859 23 6 1.2875 0.3445 9.6481 24 6 1.7858 -0.3605 10.8833 25 7 1.4609 0.1087 12.1043 26 8 2.4838 -1.3468 10.7787 27 6 1.8366 -0.4327 6.1129 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 -0.7216 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 1.6673 -0.1926 -5.6868 37 1 3.1300 -0.7217 1.2490 38 1 1.6767 -1.7490 1.2492 39 1 0.3646 1.6465 3.8696 40 1 -0.3897 2.7140 5.9513 41 1 0.2620 1.7755 8.1289 42 1 0.1975 0.3441 9.6448 43 1 1.6504 1.3722 9.6445 44 1 1.7850 -0.3427 12.8994 45 1 0.9029 0.8977 12.1881 46 1 2.4601 -1.3133 6.1597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195075407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:04 Heat of formation + Delta-G solvation = -170.617651 kcal Electronic energy + Delta-G solvation = -27788.477355 eV Core-core repulsion = 23642.332333 eV Total energy + Delta-G solvation = -4146.145022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84029 -41.23697 -40.15631 -38.88930 -38.06551 -36.93221 -34.79498 -34.40796 -32.44809 -31.61561 -29.91263 -29.14395 -28.05418 -27.97064 -25.60726 -24.26538 -23.49662 -22.42525 -21.41958 -20.02163 -19.63221 -18.90832 -18.65698 -18.28400 -17.70089 -17.53103 -17.34699 -16.97869 -16.87211 -16.35205 -16.21952 -15.49740 -15.44504 -15.30852 -15.00866 -14.81383 -14.65862 -14.27462 -14.19634 -14.03946 -13.69192 -13.51621 -13.05565 -12.90675 -12.84030 -12.68324 -12.29943 -12.27267 -12.12959 -12.12291 -11.87971 -11.82734 -11.66459 -11.37016 -11.21906 -11.12755 -10.94774 -10.74731 -10.71581 -10.17954 -9.36310 -8.23190 -6.23744 -0.43201 0.33600 1.35201 1.37451 1.38752 1.44063 1.47724 1.48906 1.81589 2.38019 2.70587 2.83908 3.11701 3.50775 3.68161 3.87321 3.89171 3.91608 4.00075 4.11284 4.14730 4.16126 4.18087 4.26527 4.38468 4.53971 4.56163 4.67311 4.81465 4.97935 5.01094 5.11462 5.11692 5.24247 5.27932 5.31687 5.37595 5.38174 5.41000 5.52966 5.57120 5.64695 5.74496 5.82281 6.22140 6.36493 6.43933 6.62138 6.82619 7.27204 7.38539 8.92252 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.032167 B = 0.001862 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.242748 B =15035.283089 C =15703.862298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.048 4.048 3 C -0.121 4.121 4 C -0.004 4.004 5 C -0.503 4.503 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.933 3.067 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.253 1.253 13 C 0.084 3.916 14 O -0.335 6.335 15 C 0.502 3.498 16 O -0.542 6.542 17 C -0.100 4.100 18 C -0.097 4.097 19 C -0.080 4.080 20 C -0.156 4.156 21 C 0.111 3.889 22 O -0.322 6.322 23 C 0.030 3.970 24 C 0.513 3.487 25 N -0.825 5.825 26 O -0.588 6.588 27 C -0.112 4.112 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.263 0.737 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.150 0.850 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.413 0.587 45 H 0.424 0.576 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 8.534 36.553 38.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.048 4.048 3 C -0.179 4.179 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.758 3.242 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.177 1.177 13 C 0.011 3.989 14 O -0.250 6.250 15 C 0.349 3.651 16 O -0.434 6.434 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.097 4.097 20 C -0.175 4.175 21 C 0.066 3.934 22 O -0.236 6.236 23 C -0.047 4.047 24 C 0.297 3.703 25 N -0.392 5.392 26 O -0.468 6.468 27 C -0.131 4.131 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.168 0.832 40 H 0.194 0.806 41 H 0.199 0.801 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.245 0.755 45 H 0.257 0.743 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.270 7.477 36.134 37.274 hybrid contribution 0.696 -1.016 -0.637 1.386 sum -4.574 6.461 35.498 36.370 Atomic orbital electron populations 1.21661 0.93570 1.01183 1.01453 1.20466 0.97101 0.96457 0.90795 1.21656 0.99976 0.94765 1.01456 1.19579 0.96112 0.95595 0.92814 1.21292 1.30505 1.12432 0.89891 0.92841 1.25800 0.97365 0.99859 0.95810 1.70032 1.47943 1.42544 0.98432 0.85914 0.79882 0.80397 0.77995 1.19642 1.21257 1.17669 1.23244 0.98808 0.95694 0.81170 1.86501 1.69148 1.55161 1.14217 1.21666 0.76785 0.81527 0.85136 1.90817 1.37190 1.26891 1.88524 1.18765 1.03781 0.99139 0.88464 1.21692 0.95189 0.93123 1.01515 1.21423 0.98129 1.00134 0.90026 1.21966 0.98743 0.95186 1.01570 1.18713 0.96338 0.94203 0.84138 1.86144 1.71435 1.53794 1.12214 1.22887 1.02678 0.97719 0.81422 1.20555 0.79489 0.83764 0.86447 1.43486 1.55162 1.34152 1.06360 1.90821 1.39699 1.28663 1.87611 1.20345 1.01951 1.01221 0.89563 0.91278 0.93363 0.93696 0.93736 0.93361 0.91263 0.96472 0.96612 0.92764 0.91686 0.91619 0.83225 0.80560 0.80105 0.84895 0.84878 0.75456 0.74305 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 8.08 71.98 0.58 -3.82 16 2 C -0.05 -1.84 0.61 -52.18 -0.03 -1.87 16 3 C -0.12 -4.40 8.08 71.98 0.58 -3.82 16 4 C 0.00 -0.17 3.11 29.85 0.09 -0.07 16 5 C -0.50 -27.75 8.20 25.60 0.21 -27.54 16 6 H 0.05 3.18 5.92 -2.91 -0.02 3.16 16 7 C 0.01 0.47 5.47 84.66 0.46 0.94 16 8 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 9 Si 0.93 44.74 27.47 68.60 1.88 46.62 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 13 C 0.08 2.95 4.33 71.98 0.31 3.26 16 14 O -0.33 -10.42 8.13 -56.19 -0.46 -10.88 16 15 C 0.50 15.89 7.90 70.34 0.56 16.45 16 16 O -0.54 -20.68 16.13 19.93 0.32 -20.36 16 17 C -0.10 -2.47 5.87 -20.11 -0.12 -2.59 16 18 C -0.10 -1.66 9.61 22.54 0.22 -1.44 16 19 C -0.08 -0.76 10.02 22.21 0.22 -0.54 16 20 C -0.16 -1.37 9.03 22.42 0.20 -1.17 16 21 C 0.11 1.96 6.68 22.47 0.15 2.11 16 22 O -0.32 -6.07 9.67 -73.50 -0.71 -6.78 16 23 C 0.03 0.20 5.22 71.24 0.37 0.57 16 24 C 0.51 6.20 8.18 87.66 0.72 6.91 16 25 N -0.82 -1.17 8.87 -173.53 -1.54 -2.71 16 26 O -0.59 -15.39 17.34 16.00 0.28 -15.11 16 27 C -0.11 -2.75 9.53 22.64 0.22 -2.54 16 28 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 29 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 33 H 0.07 2.11 7.68 -2.39 -0.02 2.09 16 34 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 35 H 0.02 0.72 7.57 -2.38 -0.02 0.70 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.15 2.38 7.61 -2.91 -0.02 2.36 16 40 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 41 H 0.18 -0.22 6.28 -2.91 -0.02 -0.23 16 42 H 0.13 -0.14 7.64 -2.38 -0.02 -0.16 16 43 H 0.13 -0.14 7.67 -2.39 -0.02 -0.15 16 44 H 0.41 0.51 8.93 -92.71 -0.83 -0.32 16 45 H 0.42 -3.06 8.83 -92.71 -0.82 -3.88 16 46 H 0.12 3.47 7.65 -2.91 -0.02 3.45 16 Total: -1.00 -86.11 385.06 4.14 -81.96 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -0.67 Total: 0.78 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.74 Total: -15.17 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -1.24 Total: -61.07 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.57 Total: -53.13 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -86.11 4.14 -81.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195075407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.655 kcal (2) G-P(sol) polarization free energy of solvation -86.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds