Wall clock time and date at job start Tue Mar 31 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 N 1.46498 * 109.46986 * 64.99835 * 5 4 2 8 8 C 1.34776 * 120.00504 * 275.00413 * 7 5 4 9 9 O 1.21515 * 119.99722 * 359.97438 * 8 7 5 10 10 O 1.34632 * 120.00295 * 180.02562 * 8 7 5 11 11 C 1.45201 * 116.99848 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46887 * 179.97438 * 11 10 8 13 13 C 1.38237 * 119.99312 * 269.72357 * 12 11 10 14 14 C 1.38239 * 119.99321 * 179.76712 * 13 12 11 15 15 C 1.38236 * 120.00198 * 0.50418 * 14 13 12 16 16 C 1.38230 * 119.99973 * 359.74812 * 15 14 13 17 17 C 1.38234 * 120.00192 * 359.97438 * 16 15 14 18 18 C 1.50696 * 109.47265 * 184.99984 * 5 4 2 19 19 O 1.21208 * 120.00339 * 239.99996 * 18 5 4 20 20 O 1.34316 * 120.00044 * 60.00264 * 18 5 4 21 21 C 1.34920 * 117.00098 * 179.97438 * 20 18 5 22 22 H 1.07995 * 120.00011 * 359.97438 * 21 20 18 23 23 C 1.38758 * 119.99883 * 179.97438 * 21 20 18 24 24 N 1.31443 * 120.00188 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99745 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46928 * 60.00664 * 25 23 21 27 27 H 1.48503 * 109.46805 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47481 * 300.00254 * 25 23 21 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 37 37 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 38 38 H 0.97004 * 119.99437 * 95.00257 * 7 5 4 39 39 H 1.09000 * 109.47012 * 299.98962 * 11 10 8 40 40 H 1.08995 * 109.47681 * 59.99666 * 11 10 8 41 41 H 1.07996 * 120.00527 * 359.97438 * 13 12 11 42 42 H 1.08004 * 119.99758 * 180.22615 * 14 13 12 43 43 H 1.07999 * 119.99921 * 179.72144 * 15 14 13 44 44 H 1.08003 * 120.00273 * 179.97438 * 16 15 14 45 45 H 1.07991 * 120.00341 * 179.97438 * 17 16 15 46 46 H 0.96993 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 7 3.9479 -1.6872 -0.0628 8 6 4.0652 -1.1632 1.1734 9 8 3.8535 0.0196 1.3544 10 8 4.4178 -1.9499 2.2075 11 6 4.5242 -1.3178 3.5103 12 6 4.9250 -2.3463 4.5364 13 6 3.9547 -3.0535 5.2215 14 6 4.3224 -4.0004 6.1592 15 6 5.6601 -4.2326 6.4193 16 6 6.6301 -3.5216 5.7379 17 6 6.2627 -2.5789 4.7961 18 6 4.0772 -1.4302 -2.4724 19 8 4.7007 -2.4694 -2.4500 20 8 3.8431 -0.8127 -3.6419 21 6 4.3298 -1.4018 -4.7539 22 1 4.8798 -2.3281 -4.6776 23 6 4.1236 -0.8175 -5.9954 24 7 3.4547 0.3102 -6.0883 25 14 4.7981 -1.6328 -7.5349 26 1 4.2101 -2.9892 -7.6747 27 1 4.4453 -0.8150 -8.7231 28 1 6.2754 -1.7420 -7.4306 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6053 -1.7198 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 4.1172 -2.6314 -0.2074 39 1 5.2768 -0.5303 3.4717 40 1 3.5613 -0.8871 3.7850 41 1 2.9096 -2.8688 5.0218 42 1 3.5644 -4.5555 6.6919 43 1 5.9472 -4.9691 7.1551 44 1 7.6753 -3.7027 5.9414 45 1 7.0205 -2.0232 4.2641 46 1 3.3109 0.7188 -6.9561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000197002537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:35 Heat of formation + Delta-G solvation = -141.841242 kcal Electronic energy + Delta-G solvation = -28868.747996 eV Core-core repulsion = 24723.850813 eV Total energy + Delta-G solvation = -4144.897183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68057 -39.58371 -39.06054 -37.31896 -35.63888 -35.36197 -33.89350 -32.35334 -32.22602 -31.21112 -29.55638 -26.78288 -26.64824 -25.63667 -24.14193 -22.89342 -21.89624 -21.26756 -20.00295 -19.72245 -18.81250 -17.80882 -17.35431 -16.71087 -16.59016 -16.20390 -15.59984 -15.36524 -15.21278 -14.87951 -14.45732 -14.34534 -14.17068 -13.74025 -13.67602 -13.49798 -13.20789 -13.13346 -12.67311 -12.50459 -12.21034 -12.02652 -11.79978 -11.61246 -11.44110 -11.38457 -11.37552 -11.20941 -10.75141 -10.68229 -10.51003 -10.47735 -10.39450 -10.18846 -10.10801 -9.88785 -9.22941 -9.21935 -9.17799 -8.87706 -8.64451 -6.47854 -4.16393 0.85706 1.10493 2.27795 2.95564 3.06515 3.15797 3.19624 3.38542 3.49619 3.86694 4.24208 4.42380 4.51939 4.61641 4.72383 4.82247 4.97902 5.02295 5.14418 5.20133 5.23898 5.26191 5.28109 5.35031 5.53367 5.64265 5.73252 5.80700 5.92383 6.00065 6.05955 6.11848 6.14725 6.19427 6.24370 6.27090 6.32126 6.40130 6.45985 6.53240 6.66262 6.69350 6.80098 6.87488 7.31709 7.63102 7.85807 8.49579 8.56566 8.99977 9.71572 10.69129 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.002578 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.403365 B =10859.262919 C =12167.888957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.122 4.122 5 C 0.181 3.819 6 H 0.119 0.881 7 N -0.687 5.687 8 C 0.650 3.350 9 O -0.564 6.564 10 O -0.366 6.366 11 C 0.130 3.870 12 C -0.097 4.097 13 C -0.093 4.093 14 C -0.125 4.125 15 C -0.111 4.111 16 C -0.125 4.125 17 C -0.093 4.093 18 C 0.391 3.609 19 O -0.553 6.553 20 O -0.201 6.201 21 C -0.385 4.385 22 H 0.097 0.903 23 C 0.045 3.955 24 N -0.859 5.859 25 Si 0.945 3.055 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.269 1.269 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.414 0.586 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 -3.865 21.721 22.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.196 4.196 4 C -0.161 4.161 5 C 0.076 3.924 6 H 0.137 0.863 7 N -0.348 5.348 8 C 0.403 3.597 9 O -0.453 6.453 10 O -0.280 6.280 11 C 0.056 3.944 12 C -0.097 4.097 13 C -0.111 4.111 14 C -0.143 4.143 15 C -0.129 4.129 16 C -0.143 4.143 17 C -0.111 4.111 18 C 0.236 3.764 19 O -0.451 6.451 20 O -0.107 6.107 21 C -0.461 4.461 22 H 0.114 0.886 23 C -0.160 4.160 24 N -0.496 5.496 25 Si 0.769 3.231 26 H -0.194 1.194 27 H -0.203 1.203 28 H -0.194 1.194 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.252 0.748 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.677 -3.363 21.669 21.939 hybrid contribution 0.427 -0.811 -0.790 1.210 sum -0.250 -4.174 20.878 21.293 Atomic orbital electron populations 1.21849 0.95912 1.01112 1.01447 1.21130 0.94705 0.97280 0.97748 1.21834 1.02704 0.94872 1.00172 1.22074 0.92215 1.01764 1.00001 1.20222 0.96280 0.94502 0.81370 0.86345 1.44403 1.72166 1.14268 1.03928 1.17921 0.76722 0.83607 0.81469 1.91007 1.55530 1.14483 1.84264 1.86309 1.82698 1.42087 1.16947 1.21663 1.02688 0.92924 0.77170 1.19582 0.93853 0.98936 0.97311 1.21127 0.99363 0.95045 0.95612 1.21167 0.96357 0.98316 0.98472 1.21240 0.93151 0.99163 0.99366 1.21174 0.99715 0.96580 0.96786 1.21147 0.95399 0.97452 0.97091 1.22894 0.81914 0.84944 0.86609 1.90560 1.42181 1.24919 1.87424 1.83854 1.65061 1.48579 1.13166 1.21201 1.35341 1.08288 0.81244 0.88571 1.25349 0.96346 0.95915 0.98400 1.69978 1.37091 1.16666 1.25815 0.85723 0.79388 0.78861 0.79091 1.19415 1.20306 1.19432 0.92586 0.93264 0.93173 0.91140 0.93741 0.90878 0.93495 0.91433 0.88763 0.74850 0.90169 0.90197 0.85688 0.85763 0.85922 0.85733 0.85630 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.19 37.16 0.34 -1.56 16 2 C -0.09 -1.35 2.38 -90.62 -0.22 -1.57 16 3 C -0.14 -2.12 8.03 37.16 0.30 -1.82 16 4 C -0.12 -2.07 4.32 -26.73 -0.12 -2.19 16 5 C 0.18 3.41 2.68 -69.08 -0.19 3.22 16 6 H 0.12 2.26 5.92 -51.93 -0.31 1.95 16 7 N -0.69 -11.57 4.91 -59.87 -0.29 -11.86 16 8 C 0.65 10.32 7.30 54.05 0.39 10.72 16 9 O -0.56 -9.48 11.09 -19.28 -0.21 -9.69 16 10 O -0.37 -5.16 10.25 -40.30 -0.41 -5.57 16 11 C 0.13 1.46 5.60 36.01 0.20 1.66 16 12 C -0.10 -0.99 5.52 -104.62 -0.58 -1.57 16 13 C -0.09 -0.86 9.70 -39.58 -0.38 -1.24 16 14 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 15 C -0.11 -0.85 10.05 -39.59 -0.40 -1.25 16 16 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 17 C -0.09 -0.88 9.70 -39.58 -0.38 -1.26 16 18 C 0.39 9.31 7.27 36.00 0.26 9.57 16 19 O -0.55 -14.14 15.07 -19.05 -0.29 -14.43 16 20 O -0.20 -5.54 9.56 -20.72 -0.20 -5.74 16 21 C -0.38 -11.05 9.65 30.92 0.30 -10.75 16 22 H 0.10 2.78 6.86 -52.49 -0.36 2.42 16 23 C 0.04 1.23 5.49 -17.53 -0.10 1.14 16 24 N -0.86 -24.50 13.67 55.48 0.76 -23.74 16 25 Si 0.95 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.10 5.19 -51.93 -0.27 0.83 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.23 4.75 -51.93 -0.25 0.98 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.73 8.00 -51.93 -0.42 1.32 16 38 H 0.41 6.92 7.90 -40.82 -0.32 6.60 16 39 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -32.00 384.63 -7.78 -39.78 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.55 Total: 9.33 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.35 Total: 0.29 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.46 Total: -35.60 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.11 Total: -35.42 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.00 -7.78 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197002537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.061 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds