Wall clock time and date at job start Tue Mar 31 2020 18:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 N 1.46498 * 109.46986 * 64.99835 * 5 4 2 8 8 C 1.34776 * 120.00504 * 275.00413 * 7 5 4 9 9 O 1.21515 * 119.99722 * 359.97438 * 8 7 5 10 10 O 1.34632 * 120.00295 * 180.02562 * 8 7 5 11 11 C 1.45201 * 116.99848 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46887 * 179.97438 * 11 10 8 13 13 C 1.38237 * 119.99312 * 269.72357 * 12 11 10 14 14 C 1.38239 * 119.99321 * 179.76712 * 13 12 11 15 15 C 1.38236 * 120.00198 * 0.50418 * 14 13 12 16 16 C 1.38230 * 119.99973 * 359.74812 * 15 14 13 17 17 C 1.38234 * 120.00192 * 359.97438 * 16 15 14 18 18 C 1.50696 * 109.47265 * 184.99984 * 5 4 2 19 19 O 1.21208 * 120.00339 * 239.99996 * 18 5 4 20 20 O 1.34316 * 120.00044 * 60.00264 * 18 5 4 21 21 C 1.34920 * 117.00098 * 179.97438 * 20 18 5 22 22 H 1.07995 * 120.00011 * 359.97438 * 21 20 18 23 23 C 1.38758 * 119.99883 * 179.97438 * 21 20 18 24 24 N 1.31443 * 120.00188 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99745 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46928 * 60.00664 * 25 23 21 27 27 H 1.48503 * 109.46805 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47481 * 300.00254 * 25 23 21 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 37 37 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 38 38 H 0.97004 * 119.99437 * 95.00257 * 7 5 4 39 39 H 1.09000 * 109.47012 * 299.98962 * 11 10 8 40 40 H 1.08995 * 109.47681 * 59.99666 * 11 10 8 41 41 H 1.07996 * 120.00527 * 359.97438 * 13 12 11 42 42 H 1.08004 * 119.99758 * 180.22615 * 14 13 12 43 43 H 1.07999 * 119.99921 * 179.72144 * 15 14 13 44 44 H 1.08003 * 120.00273 * 179.97438 * 16 15 14 45 45 H 1.07991 * 120.00341 * 179.97438 * 17 16 15 46 46 H 0.96993 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 7 3.9479 -1.6872 -0.0628 8 6 4.0652 -1.1632 1.1734 9 8 3.8535 0.0196 1.3544 10 8 4.4178 -1.9499 2.2075 11 6 4.5242 -1.3178 3.5103 12 6 4.9250 -2.3463 4.5364 13 6 3.9547 -3.0535 5.2215 14 6 4.3224 -4.0004 6.1592 15 6 5.6601 -4.2326 6.4193 16 6 6.6301 -3.5216 5.7379 17 6 6.2627 -2.5789 4.7961 18 6 4.0772 -1.4302 -2.4724 19 8 4.7007 -2.4694 -2.4500 20 8 3.8431 -0.8127 -3.6419 21 6 4.3298 -1.4018 -4.7539 22 1 4.8798 -2.3281 -4.6776 23 6 4.1236 -0.8175 -5.9954 24 7 3.4547 0.3102 -6.0883 25 14 4.7981 -1.6328 -7.5349 26 1 4.2101 -2.9892 -7.6747 27 1 4.4453 -0.8150 -8.7231 28 1 6.2754 -1.7420 -7.4306 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6053 -1.7198 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 4.1172 -2.6314 -0.2074 39 1 5.2768 -0.5303 3.4717 40 1 3.5613 -0.8871 3.7850 41 1 2.9096 -2.8688 5.0218 42 1 3.5644 -4.5555 6.6919 43 1 5.9472 -4.9691 7.1551 44 1 7.6753 -3.7027 5.9414 45 1 7.0205 -2.0232 4.2641 46 1 3.3109 0.7188 -6.9561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000197002537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:34 Heat of formation + Delta-G solvation = -159.903948 kcal Electronic energy + Delta-G solvation = -28869.531254 eV Core-core repulsion = 24723.850813 eV Total energy + Delta-G solvation = -4145.680441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03681 -41.06933 -40.11516 -38.66310 -37.35015 -36.82952 -35.31422 -34.33949 -33.12340 -31.84151 -30.97998 -27.96099 -27.65946 -27.47194 -25.68931 -23.53150 -23.13258 -22.20261 -21.63791 -21.02708 -20.23443 -19.88416 -18.30307 -18.17981 -17.88297 -17.43764 -16.96195 -16.83452 -16.31895 -16.12091 -16.08202 -15.80176 -15.53500 -14.94434 -14.63146 -14.59467 -14.32813 -14.04925 -13.91720 -13.68561 -13.61367 -13.36764 -13.30025 -13.12045 -12.96049 -12.63313 -12.41093 -12.18584 -12.10473 -12.07921 -12.06666 -11.96433 -11.76183 -11.66251 -11.45213 -11.36566 -11.03739 -10.71667 -10.34770 -9.86348 -9.85731 -8.55706 -6.36068 0.11002 0.46233 1.06260 1.22442 1.36375 1.51276 1.55893 1.68238 2.09406 2.57622 2.79063 2.95636 3.20293 3.72206 3.75911 3.82405 3.88323 3.99337 4.09062 4.16644 4.24338 4.26163 4.32850 4.50249 4.50410 4.59106 4.68613 4.70344 4.79015 4.89078 4.96837 4.99930 5.03324 5.10656 5.11495 5.13825 5.22615 5.26061 5.31906 5.50805 5.54778 5.57318 5.58629 5.60445 5.78335 6.04369 6.28583 6.52616 6.88229 7.20614 7.65503 8.63673 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.002578 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.403365 B =10859.262919 C =12167.888957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.115 4.115 5 C 0.196 3.804 6 H 0.117 0.883 7 N -0.688 5.688 8 C 0.655 3.345 9 O -0.572 6.572 10 O -0.367 6.367 11 C 0.128 3.872 12 C -0.116 4.116 13 C -0.104 4.104 14 C -0.130 4.130 15 C -0.112 4.112 16 C -0.131 4.131 17 C -0.108 4.108 18 C 0.393 3.607 19 O -0.571 6.571 20 O -0.227 6.227 21 C -0.422 4.422 22 H 0.085 0.915 23 C 0.000 4.000 24 N -0.896 5.896 25 Si 1.016 2.984 26 H -0.260 1.260 27 H -0.261 1.261 28 H -0.263 1.263 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.415 0.585 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.128 0.872 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 -4.767 22.874 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.154 4.154 5 C 0.091 3.909 6 H 0.135 0.865 7 N -0.349 5.349 8 C 0.409 3.591 9 O -0.462 6.462 10 O -0.282 6.282 11 C 0.054 3.946 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.147 4.147 15 C -0.130 4.130 16 C -0.149 4.149 17 C -0.127 4.127 18 C 0.240 3.760 19 O -0.470 6.470 20 O -0.134 6.134 21 C -0.498 4.498 22 H 0.103 0.897 23 C -0.201 4.201 24 N -0.532 5.532 25 Si 0.835 3.165 26 H -0.185 1.185 27 H -0.185 1.185 28 H -0.187 1.187 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.252 0.748 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.146 0.854 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.926 -4.265 22.870 23.283 hybrid contribution 0.544 -0.564 -0.962 1.240 sum -0.383 -4.830 21.909 22.438 Atomic orbital electron populations 1.21814 0.93959 1.01930 1.02232 1.21071 0.96261 0.96634 0.96166 1.21789 1.01520 0.95216 1.00733 1.22033 0.90628 1.02142 1.00564 1.20079 0.97378 0.94030 0.79457 0.86506 1.44283 1.72729 1.13959 1.03967 1.17839 0.76350 0.83498 0.81450 1.91004 1.55849 1.14896 1.84455 1.86328 1.82177 1.42132 1.17542 1.21882 1.03206 0.93477 0.75994 1.19603 0.94581 0.99714 0.97707 1.21336 0.99670 0.95301 0.95937 1.21496 0.97269 0.97917 0.98067 1.21619 0.92934 0.99110 0.99304 1.21473 1.01058 0.96069 0.96300 1.21327 0.95292 0.98177 0.97857 1.23856 0.80533 0.84387 0.87228 1.90530 1.42738 1.25823 1.87859 1.83875 1.65986 1.49438 1.14060 1.21421 1.37027 1.08846 0.82479 0.89697 1.26517 0.95969 0.96333 1.01278 1.70062 1.37912 1.17951 1.27268 0.84701 0.78841 0.78231 0.74719 1.18472 1.18458 1.18722 0.92678 0.92480 0.91519 0.91373 0.92424 0.92646 0.93642 0.90971 0.90388 0.74760 0.90101 0.89463 0.84869 0.83529 0.83383 0.83815 0.85423 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.19 71.98 0.66 -2.79 16 2 C -0.08 -2.42 2.38 -10.79 -0.03 -2.44 16 3 C -0.14 -4.06 8.03 71.98 0.58 -3.48 16 4 C -0.11 -3.93 4.32 30.59 0.13 -3.80 16 5 C 0.20 7.53 2.68 44.25 0.12 7.65 16 6 H 0.12 4.58 5.92 -2.39 -0.01 4.57 16 7 N -0.69 -23.36 4.91 -573.74 -2.82 -26.17 16 8 C 0.66 20.68 7.30 129.79 0.95 21.62 16 9 O -0.57 -19.05 11.09 19.79 0.22 -18.83 16 10 O -0.37 -10.24 10.25 -55.42 -0.57 -10.81 16 11 C 0.13 2.83 5.60 71.24 0.40 3.23 16 12 C -0.12 -2.30 5.52 -19.86 -0.11 -2.41 16 13 C -0.10 -1.79 9.70 22.27 0.22 -1.57 16 14 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 15 C -0.11 -1.46 10.05 22.27 0.22 -1.23 16 16 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 17 C -0.11 -1.98 9.70 22.27 0.22 -1.77 16 18 C 0.39 19.33 7.27 71.23 0.52 19.85 16 19 O -0.57 -30.01 15.07 20.78 0.31 -29.70 16 20 O -0.23 -12.97 9.56 14.82 0.14 -12.83 16 21 C -0.42 -24.96 9.65 67.94 0.66 -24.30 16 22 H 0.09 5.06 6.86 -2.91 -0.02 5.04 16 23 C 0.00 0.02 5.49 84.88 0.47 0.49 16 24 N -0.90 -51.71 13.67 21.63 0.30 -51.41 16 25 Si 1.02 42.48 29.55 68.60 2.03 44.51 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 27 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 28 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.05 5.19 -2.39 -0.01 2.04 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.86 4.75 -2.39 -0.01 1.84 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.08 2.94 8.00 -2.39 -0.02 2.92 16 38 H 0.42 14.02 7.90 -92.71 -0.73 13.29 16 39 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 40 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 41 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.13 2.14 8.06 -2.92 -0.02 2.12 16 46 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -69.62 384.63 5.33 -64.29 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.27 Total: 35.19 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.44 Total: 5.75 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.52 Total: -77.58 kcal Atomic # 8 Polarization: -72.27 SS G_CDS: 0.11 Total: -72.17 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -69.62 5.33 -64.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197002537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.610 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds