Wall clock time and date at job start Tue Mar 31 2020 18:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34635 * 116.99888 * 2 1 4 4 O 1.21509 * 120.00180 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99997 * 179.97438 * 3 2 1 6 6 C 1.46491 * 120.00205 * 180.02562 * 5 3 2 7 7 H 1.09006 * 109.47192 * 324.99449 * 6 5 3 8 8 C 1.50705 * 109.47278 * 205.00478 * 6 5 3 9 9 O 1.20826 * 119.99664 * 0.27374 * 8 6 5 10 10 O 1.34225 * 120.00637 * 180.02562 * 8 6 5 11 11 C 1.45200 * 117.00514 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.38638 * 119.75298 * 269.72564 * 12 11 10 14 14 C 1.37618 * 120.24562 * 179.72738 * 13 12 11 15 15 C 1.40714 * 119.74435 * 0.56874 * 14 13 12 16 16 C 1.41397 * 120.24177 * 179.68291 * 15 14 13 17 17 H 1.08001 * 120.00291 * 204.40710 * 16 15 14 18 18 C 1.39947 * 119.99876 * 24.40901 * 16 15 14 19 19 N 1.30833 * 120.00137 * 17.84747 * 18 16 15 20 20 Si 1.86798 * 120.00140 * 197.84297 * 18 16 15 21 21 H 1.48508 * 109.46847 * 60.00297 * 20 18 16 22 22 H 1.48501 * 109.47533 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47453 * 300.00405 * 20 18 16 24 24 C 1.40711 * 119.51538 * 359.70743 * 15 14 13 25 25 C 1.37615 * 119.74493 * 359.97438 * 24 15 14 26 26 C 1.52995 * 109.47386 * 85.00341 * 6 5 3 27 27 C 1.52997 * 109.47233 * 64.99935 * 26 6 5 28 28 C 1.53003 * 109.46983 * 185.00141 * 26 6 5 29 29 H 1.08995 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47131 * 299.99834 * 1 2 3 31 31 H 1.09002 * 109.47054 * 59.99530 * 1 2 3 32 32 H 0.97001 * 119.99511 * 0.02562 * 5 3 2 33 33 H 1.08994 * 109.46612 * 300.00210 * 11 10 8 34 34 H 1.09002 * 109.46492 * 59.99669 * 11 10 8 35 35 H 1.07997 * 119.87275 * 359.97438 * 13 12 11 36 36 H 1.07997 * 120.12220 * 180.28383 * 14 13 12 37 37 H 0.96997 * 119.99645 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.12863 * 179.97438 * 24 15 14 39 39 H 1.08001 * 119.88165 * 179.97438 * 25 24 15 40 40 H 1.08999 * 109.46989 * 304.99963 * 26 6 5 41 41 H 1.08999 * 109.47110 * 60.00102 * 27 26 6 42 42 H 1.09001 * 109.46991 * 180.02562 * 27 26 6 43 43 H 1.09001 * 109.47158 * 299.99824 * 27 26 6 44 44 H 1.09001 * 109.46864 * 179.97438 * 28 26 6 45 45 H 1.09000 * 109.47101 * 299.99191 * 28 26 6 46 46 H 1.08994 * 109.47297 * 60.00224 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5754 0.0011 7 1 3.4894 3.2815 -0.5885 8 6 5.4499 2.4386 -0.5990 9 8 5.8332 1.3622 -0.9918 10 8 6.2474 3.5133 -0.7017 11 6 7.5591 3.3073 -1.2893 12 6 8.3059 4.6157 -1.3221 13 6 8.1988 5.4414 -2.4307 14 6 8.8720 6.6411 -2.4690 15 6 9.6807 7.0229 -1.3826 16 6 10.3823 8.2502 -1.4137 17 1 11.2729 8.3784 -0.8164 18 6 9.9226 9.2987 -2.2186 19 7 8.6917 9.2918 -2.6620 20 14 11.0663 10.7082 -2.6596 21 1 12.2423 10.1794 -3.3964 22 1 10.3436 11.6828 -3.5159 23 1 11.5226 11.3827 -1.4177 24 6 9.7864 6.1743 -0.2652 25 6 9.0991 4.9822 -0.2457 26 6 4.1933 3.0866 1.4382 27 6 5.1166 2.1615 2.2337 28 6 4.7739 4.5022 1.4295 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9374 0.4566 0.0005 33 1 8.1156 2.5856 -0.6915 34 1 7.4465 2.9279 -2.3050 35 1 7.5817 5.1438 -3.2655 36 1 8.7835 7.2849 -3.3316 37 1 8.3731 10.0188 -3.2195 38 1 10.4046 6.4573 0.5739 39 1 9.1790 4.3290 0.6106 40 1 3.2068 3.1013 1.9015 41 1 6.1031 2.1468 1.7704 42 1 5.2010 2.5255 3.2576 43 1 4.7030 1.1531 2.2399 44 1 4.8583 4.8665 2.4534 45 1 5.7604 4.4874 0.9663 46 1 4.1161 5.1611 0.8629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271847015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:31 Heat of formation + Delta-G solvation = -157.429138 kcal Electronic energy + Delta-G solvation = -28782.356264 eV Core-core repulsion = 24636.783139 eV Total energy + Delta-G solvation = -4145.573125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13420 -40.21798 -37.92596 -37.34328 -36.24627 -35.98483 -33.93802 -33.57339 -30.87255 -29.41305 -28.65996 -27.61857 -27.09566 -26.55212 -23.95569 -22.05289 -21.89249 -21.12690 -20.10676 -19.75968 -19.38068 -17.43221 -17.38863 -17.01001 -16.82225 -16.61655 -16.23175 -15.41373 -15.00143 -14.61756 -14.42935 -14.27000 -14.02931 -13.73638 -13.66061 -13.39844 -12.91062 -12.64311 -12.51813 -12.36212 -12.22400 -12.06555 -11.98349 -11.76919 -11.55157 -11.20132 -11.11373 -11.08621 -11.03360 -10.93755 -10.89815 -10.80970 -10.45367 -10.35821 -10.21010 -9.76028 -9.52981 -9.49189 -9.24597 -7.60132 -7.48979 -6.89738 -4.49781 1.69613 2.20218 2.41955 2.56371 2.92825 2.97775 3.00550 3.03171 3.28679 3.83155 3.94550 4.43665 4.53093 4.73272 4.85110 4.87129 4.93860 5.01222 5.17754 5.31050 5.45205 5.55493 5.59220 5.61488 5.69046 5.72173 5.90224 5.94667 5.98405 6.02147 6.09124 6.20121 6.20462 6.27574 6.58403 6.71161 6.84078 6.94266 7.08961 7.14551 7.22850 7.47887 7.69309 7.83750 7.92255 7.96956 8.04813 8.15820 8.50444 8.75128 8.83192 10.03768 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.002245 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.887951 B =12466.935860 C =12698.391438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.653 3.347 4 O -0.568 6.568 5 N -0.694 5.694 6 C 0.172 3.828 7 H 0.129 0.871 8 C 0.460 3.540 9 O -0.515 6.515 10 O -0.334 6.334 11 C 0.133 3.867 12 C -0.237 4.237 13 C -0.074 4.074 14 C -0.171 4.171 15 C 0.119 3.881 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.230 4.230 25 C -0.062 4.062 26 C -0.099 4.099 27 C -0.152 4.152 28 C -0.160 4.160 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.416 0.584 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.284 0.716 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 -12.810 5.368 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.406 3.594 4 O -0.456 6.456 5 N -0.355 5.355 6 C 0.067 3.933 7 H 0.146 0.854 8 C 0.302 3.698 9 O -0.405 6.405 10 O -0.249 6.249 11 C 0.062 3.938 12 C -0.239 4.239 13 C -0.093 4.093 14 C -0.190 4.190 15 C 0.116 3.884 16 C -0.484 4.484 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.250 4.250 25 C -0.081 4.081 26 C -0.118 4.118 27 C -0.210 4.210 28 C -0.217 4.217 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.253 0.747 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.483 -12.488 5.084 17.710 hybrid contribution 0.499 0.248 -0.314 0.640 sum -10.983 -12.240 4.770 17.123 Atomic orbital electron populations 1.23225 0.74130 1.03546 1.02896 1.86249 1.24347 1.30766 1.87034 1.17924 0.82964 0.82345 0.76197 1.91026 1.64495 1.34708 1.55412 1.44281 1.03334 1.09939 1.77924 1.20560 0.89118 0.84760 0.98908 0.85373 1.23266 0.87382 0.83267 0.75855 1.90634 1.75039 1.28616 1.46212 1.86797 1.28782 1.36311 1.73043 1.21828 0.78109 0.97045 0.96848 1.18624 1.07856 0.98396 0.98994 1.20537 0.98203 0.94444 0.96119 1.21293 1.02423 0.95552 0.99724 1.17683 0.89370 0.91684 0.89630 1.19659 1.09990 0.96434 1.22270 0.90180 1.25982 0.94892 0.99814 0.93772 1.69818 1.14543 1.31265 1.25104 0.86323 0.80927 0.79792 0.79491 1.18696 1.20213 1.18865 1.20954 1.07629 0.97429 0.98962 1.20376 0.96423 0.95775 0.95482 1.21485 1.01239 0.97006 0.92093 1.21918 0.99290 0.99054 1.00689 1.22044 1.03578 0.93529 1.02549 0.87889 0.91712 0.91710 0.74668 0.91927 0.91901 0.89344 0.86256 0.90513 0.88735 0.89317 0.89347 0.92466 0.91612 0.92642 0.92058 0.89331 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.92 10.62 -40.31 -0.43 -4.34 16 3 C 0.65 8.20 8.71 54.06 0.47 8.67 16 4 O -0.57 -8.49 15.80 -19.28 -0.30 -8.79 16 5 N -0.69 -8.20 4.41 -59.87 -0.26 -8.47 16 6 C 0.17 2.20 2.29 -69.09 -0.16 2.04 16 7 H 0.13 1.70 7.58 -51.93 -0.39 1.31 16 8 C 0.46 6.87 5.80 36.01 0.21 7.08 16 9 O -0.52 -8.39 15.59 -18.75 -0.29 -8.69 16 10 O -0.33 -5.59 7.35 -39.25 -0.29 -5.88 16 11 C 0.13 2.36 5.58 36.00 0.20 2.56 16 12 C -0.24 -4.96 5.54 -104.33 -0.58 -5.54 16 13 C -0.07 -1.67 9.67 -39.66 -0.38 -2.05 16 14 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 15 C 0.12 3.04 5.57 -106.83 -0.60 2.45 16 16 C -0.45 -11.53 9.05 -37.74 -0.34 -11.88 16 17 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 18 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 19 N -0.78 -19.45 10.95 55.55 0.61 -18.84 16 20 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 25 C -0.06 -1.32 9.67 -39.66 -0.38 -1.70 16 26 C -0.10 -1.15 2.87 -90.62 -0.26 -1.41 16 27 C -0.15 -1.64 8.76 37.16 0.33 -1.31 16 28 C -0.16 -2.02 8.83 37.16 0.33 -1.69 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.42 4.57 7.91 -40.82 -0.32 4.25 16 33 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.06 1.08 8.07 -51.93 -0.42 0.67 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 37 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 38 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.69 7.07 -51.93 -0.37 0.32 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.55 7.75 -51.93 -0.40 0.15 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.32 5.46 -51.93 -0.28 1.04 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -28.38 387.59 -7.77 -36.15 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.71 Total: 10.14 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.91 Total: -9.96 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.34 Total: -27.31 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.31 Total: -27.70 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.38 -7.77 -36.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271847015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.282 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds