Wall clock time and date at job start Tue Mar 31 2020 18:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34635 * 116.99888 * 2 1 4 4 O 1.21509 * 120.00180 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99997 * 179.97438 * 3 2 1 6 6 C 1.46491 * 120.00205 * 180.02562 * 5 3 2 7 7 H 1.09006 * 109.47192 * 324.99449 * 6 5 3 8 8 C 1.50705 * 109.47278 * 205.00478 * 6 5 3 9 9 O 1.20826 * 119.99664 * 0.27374 * 8 6 5 10 10 O 1.34225 * 120.00637 * 180.02562 * 8 6 5 11 11 C 1.45200 * 117.00514 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.46936 * 179.97438 * 11 10 8 13 13 C 1.38638 * 119.75298 * 269.72564 * 12 11 10 14 14 C 1.37618 * 120.24562 * 179.72738 * 13 12 11 15 15 C 1.40714 * 119.74435 * 0.56874 * 14 13 12 16 16 C 1.41397 * 120.24177 * 179.68291 * 15 14 13 17 17 H 1.08001 * 120.00291 * 204.40710 * 16 15 14 18 18 C 1.39947 * 119.99876 * 24.40901 * 16 15 14 19 19 N 1.30833 * 120.00137 * 17.84747 * 18 16 15 20 20 Si 1.86798 * 120.00140 * 197.84297 * 18 16 15 21 21 H 1.48508 * 109.46847 * 60.00297 * 20 18 16 22 22 H 1.48501 * 109.47533 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47453 * 300.00405 * 20 18 16 24 24 C 1.40711 * 119.51538 * 359.70743 * 15 14 13 25 25 C 1.37615 * 119.74493 * 359.97438 * 24 15 14 26 26 C 1.52995 * 109.47386 * 85.00341 * 6 5 3 27 27 C 1.52997 * 109.47233 * 64.99935 * 26 6 5 28 28 C 1.53003 * 109.46983 * 185.00141 * 26 6 5 29 29 H 1.08995 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47131 * 299.99834 * 1 2 3 31 31 H 1.09002 * 109.47054 * 59.99530 * 1 2 3 32 32 H 0.97001 * 119.99511 * 0.02562 * 5 3 2 33 33 H 1.08994 * 109.46612 * 300.00210 * 11 10 8 34 34 H 1.09002 * 109.46492 * 59.99669 * 11 10 8 35 35 H 1.07997 * 119.87275 * 359.97438 * 13 12 11 36 36 H 1.07997 * 120.12220 * 180.28383 * 14 13 12 37 37 H 0.96997 * 119.99645 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.12863 * 179.97438 * 24 15 14 39 39 H 1.08001 * 119.88165 * 179.97438 * 25 24 15 40 40 H 1.08999 * 109.46989 * 304.99963 * 26 6 5 41 41 H 1.08999 * 109.47110 * 60.00102 * 27 26 6 42 42 H 1.09001 * 109.46991 * 180.02562 * 27 26 6 43 43 H 1.09001 * 109.47158 * 299.99824 * 27 26 6 44 44 H 1.09001 * 109.46864 * 179.97438 * 28 26 6 45 45 H 1.09000 * 109.47101 * 299.99191 * 28 26 6 46 46 H 1.08994 * 109.47297 * 60.00224 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5754 0.0011 7 1 3.4894 3.2815 -0.5885 8 6 5.4499 2.4386 -0.5990 9 8 5.8332 1.3622 -0.9918 10 8 6.2474 3.5133 -0.7017 11 6 7.5591 3.3073 -1.2893 12 6 8.3059 4.6157 -1.3221 13 6 8.1988 5.4414 -2.4307 14 6 8.8720 6.6411 -2.4690 15 6 9.6807 7.0229 -1.3826 16 6 10.3823 8.2502 -1.4137 17 1 11.2729 8.3784 -0.8164 18 6 9.9226 9.2987 -2.2186 19 7 8.6917 9.2918 -2.6620 20 14 11.0663 10.7082 -2.6596 21 1 12.2423 10.1794 -3.3964 22 1 10.3436 11.6828 -3.5159 23 1 11.5226 11.3827 -1.4177 24 6 9.7864 6.1743 -0.2652 25 6 9.0991 4.9822 -0.2457 26 6 4.1933 3.0866 1.4382 27 6 5.1166 2.1615 2.2337 28 6 4.7739 4.5022 1.4295 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9374 0.4566 0.0005 33 1 8.1156 2.5856 -0.6915 34 1 7.4465 2.9279 -2.3050 35 1 7.5817 5.1438 -3.2655 36 1 8.7835 7.2849 -3.3316 37 1 8.3731 10.0188 -3.2195 38 1 10.4046 6.4573 0.5739 39 1 9.1790 4.3290 0.6106 40 1 3.2068 3.1013 1.9015 41 1 6.1031 2.1468 1.7704 42 1 5.2010 2.5255 3.2576 43 1 4.7030 1.1531 2.2399 44 1 4.8583 4.8665 2.4534 45 1 5.7604 4.4874 0.9663 46 1 4.1161 5.1611 0.8629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271847015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:30 Heat of formation + Delta-G solvation = -171.885297 kcal Electronic energy + Delta-G solvation = -28782.983130 eV Core-core repulsion = 24636.783139 eV Total energy + Delta-G solvation = -4146.199991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23841 -41.30135 -39.53941 -38.46779 -37.54998 -36.99158 -35.68372 -34.57938 -32.58484 -31.21051 -29.69351 -28.85507 -28.13558 -27.58347 -25.58343 -23.24338 -22.93595 -22.83983 -21.81913 -20.84611 -20.33625 -19.25335 -18.55510 -18.08572 -17.94944 -17.54607 -17.47271 -17.06816 -16.26563 -15.81503 -15.75698 -15.55206 -15.15810 -15.11297 -14.87310 -14.40130 -14.26281 -14.00556 -13.91085 -13.82396 -13.52380 -13.39851 -12.98518 -12.96010 -12.84002 -12.69633 -12.57634 -12.48295 -12.20369 -12.03974 -11.96605 -11.84457 -11.82819 -11.64753 -11.58880 -11.41440 -11.26615 -11.02085 -10.51339 -9.41572 -9.30706 -8.67820 -6.38331 0.59809 0.94468 0.99093 1.14102 1.38697 1.46234 1.51142 1.57212 1.91538 2.19593 2.71151 3.07928 3.47455 3.57592 3.76900 3.80955 4.05283 4.09644 4.13704 4.29170 4.35804 4.38178 4.48388 4.50692 4.53636 4.58059 4.68394 4.77108 4.84660 4.96361 4.99501 5.03224 5.10593 5.12898 5.21414 5.27648 5.32471 5.37627 5.41803 5.57809 5.66885 5.90453 6.07272 6.14583 6.16466 6.34072 6.57163 6.66227 6.89977 6.99038 7.10677 8.28250 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.002245 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.887951 B =12466.935860 C =12698.391438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.371 6.371 3 C 0.655 3.345 4 O -0.595 6.595 5 N -0.687 5.687 6 C 0.177 3.823 7 H 0.124 0.876 8 C 0.466 3.534 9 O -0.526 6.526 10 O -0.340 6.340 11 C 0.138 3.862 12 C -0.226 4.226 13 C -0.080 4.080 14 C -0.195 4.195 15 C 0.088 3.912 16 C -0.493 4.493 17 H 0.080 0.920 18 C 0.035 3.965 19 N -0.817 5.817 20 Si 0.983 3.017 21 H -0.260 1.260 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.244 4.244 25 C -0.061 4.061 26 C -0.091 4.091 27 C -0.149 4.149 28 C -0.157 4.157 29 H 0.138 0.862 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.421 0.579 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.290 0.710 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.783 -14.255 6.246 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.284 6.284 3 C 0.408 3.592 4 O -0.485 6.485 5 N -0.349 5.349 6 C 0.072 3.928 7 H 0.142 0.858 8 C 0.309 3.691 9 O -0.416 6.416 10 O -0.256 6.256 11 C 0.066 3.934 12 C -0.228 4.228 13 C -0.099 4.099 14 C -0.214 4.214 15 C 0.085 3.915 16 C -0.521 4.521 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.443 5.443 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.193 1.193 23 H -0.182 1.182 24 C -0.264 4.264 25 C -0.079 4.079 26 C -0.110 4.110 27 C -0.206 4.206 28 C -0.215 4.215 29 H 0.156 0.844 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.260 0.740 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.202 -13.974 5.971 19.488 hybrid contribution 0.570 0.488 -0.545 0.927 sum -11.632 -13.485 5.425 18.617 Atomic orbital electron populations 1.23574 0.72262 1.05858 1.02862 1.86269 1.26125 1.29445 1.86579 1.17998 0.82926 0.82586 0.75698 1.91011 1.65067 1.35773 1.56687 1.44187 1.03308 1.09707 1.77687 1.20514 0.87598 0.85279 0.99449 0.85837 1.23557 0.87676 0.82525 0.75346 1.90633 1.75361 1.28880 1.46709 1.86769 1.28469 1.37182 1.73173 1.21673 0.78651 0.95285 0.97818 1.18932 1.07043 0.98894 0.97897 1.20778 0.97857 0.93908 0.97352 1.21258 1.04033 0.96651 0.99508 1.18035 0.90237 0.92626 0.90592 1.19902 1.10701 0.97392 1.24140 0.90231 1.26811 0.96150 1.02098 0.93081 1.69873 1.16046 1.32466 1.25867 0.85241 0.78634 0.76487 0.79327 1.18463 1.19258 1.18225 1.21169 1.08277 0.98213 0.98717 1.20701 0.95347 0.95376 0.96522 1.21435 1.01716 0.96504 0.91363 1.21902 0.98234 0.99398 1.01108 1.22005 1.02200 0.94267 1.03027 0.84435 0.91561 0.91999 0.74034 0.90258 0.91275 0.87751 0.88004 0.89934 0.87993 0.86161 0.88730 0.93724 0.90255 0.91691 0.90792 0.91418 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -7.12 10.62 -55.44 -0.59 -7.70 16 3 C 0.65 15.42 8.71 129.79 1.13 16.56 16 4 O -0.59 -17.12 15.80 19.81 0.31 -16.80 16 5 N -0.69 -15.08 4.41 -573.74 -2.53 -17.61 16 6 C 0.18 4.28 2.29 44.25 0.10 4.38 16 7 H 0.12 3.16 7.58 -2.38 -0.02 3.14 16 8 C 0.47 13.15 5.80 71.24 0.41 13.56 16 9 O -0.53 -16.08 15.59 21.96 0.34 -15.74 16 10 O -0.34 -10.88 7.35 -51.37 -0.38 -11.26 16 11 C 0.14 4.61 5.58 71.23 0.40 5.01 16 12 C -0.23 -9.23 5.54 -19.67 -0.11 -9.34 16 13 C -0.08 -3.64 9.67 22.22 0.21 -3.42 16 14 C -0.20 -10.07 8.70 22.73 0.20 -9.87 16 15 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 16 C -0.49 -25.87 9.05 23.46 0.21 -25.65 16 17 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 18 C 0.03 1.71 5.14 85.26 0.44 2.14 16 19 N -0.82 -41.94 10.95 21.83 0.24 -41.70 16 20 Si 0.98 37.15 29.59 68.60 2.03 39.18 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 24 C -0.24 -11.53 9.80 22.73 0.22 -11.31 16 25 C -0.06 -2.54 9.67 22.22 0.21 -2.32 16 26 C -0.09 -1.95 2.87 -10.80 -0.03 -1.98 16 27 C -0.15 -2.86 8.76 71.98 0.63 -2.23 16 28 C -0.16 -3.79 8.83 71.98 0.64 -3.16 16 29 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.42 8.43 7.91 -92.71 -0.73 7.70 16 33 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 34 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 35 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 37 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 38 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 0.97 7.07 -2.39 -0.02 0.96 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.12 7.75 -2.39 -0.02 1.10 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.94 5.46 -2.39 -0.01 1.93 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -62.03 387.59 5.45 -56.58 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.27 Total: 36.39 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 5.75 Total: -21.34 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -2.29 Total: -59.31 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.31 Total: -51.51 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -62.03 5.45 -56.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271847015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.302 kcal (2) G-P(sol) polarization free energy of solvation -62.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds