Wall clock time and date at job start Tue Mar 31 2020 19:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 H 1.09004 * 109.47167 * 19.36655 * 3 2 1 5 5 C 1.52997 * 109.46976 * 139.36494 * 3 2 1 6 6 N 1.46499 * 109.47197 * 259.36656 * 3 2 1 7 7 C 1.46505 * 119.99840 * 117.20971 * 6 3 2 8 8 C 1.50699 * 109.47187 * 89.99925 * 7 6 3 9 9 O 1.20827 * 119.99869 * 359.97438 * 8 7 6 10 10 O 1.34230 * 119.99693 * 179.97438 * 8 7 6 11 11 C 1.45200 * 116.99617 * 179.97438 * 10 8 7 12 12 C 1.34774 * 119.99860 * 297.20554 * 6 3 2 13 13 O 1.21593 * 119.99677 * 148.15393 * 12 6 3 14 14 C 1.47537 * 120.00122 * 328.14973 * 12 6 3 15 15 C 1.39660 * 120.19437 * 43.48977 * 14 12 6 16 16 C 1.37828 * 119.91946 * 180.02562 * 15 14 12 17 17 C 1.38582 * 120.32129 * 359.97438 * 16 15 14 18 18 C 1.38024 * 120.40214 * 0.02578 * 17 16 15 19 19 C 1.38834 * 120.07042 * 359.67246 * 18 17 16 20 20 O 1.35523 * 120.16253 * 180.30119 * 19 18 17 21 21 C 1.34814 * 116.99895 * 5.87518 * 20 19 18 22 22 H 1.07998 * 119.99771 * 5.42546 * 21 20 19 23 23 C 1.38697 * 119.99929 * 185.42295 * 21 20 19 24 24 N 1.31524 * 120.00065 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99777 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47534 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46874 * 119.99992 * 25 23 21 28 28 H 1.48500 * 109.47131 * 239.99816 * 25 23 21 29 29 H 1.08995 * 109.47525 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47211 * 299.99421 * 1 2 3 31 31 H 1.09002 * 109.47947 * 59.99452 * 1 2 3 32 32 H 1.09003 * 109.46794 * 240.00810 * 2 1 3 33 33 H 1.08996 * 109.47552 * 120.00357 * 2 1 3 34 34 H 1.08998 * 109.47188 * 226.36295 * 5 3 2 35 35 H 1.09003 * 109.47120 * 346.36365 * 5 3 2 36 36 H 1.08995 * 109.47111 * 106.35863 * 5 3 2 37 37 H 1.08998 * 109.46989 * 209.99754 * 7 6 3 38 38 H 1.08999 * 109.46854 * 329.99725 * 7 6 3 39 39 H 1.09000 * 109.47413 * 180.02562 * 11 10 8 40 40 H 1.09001 * 109.47285 * 299.99744 * 11 10 8 41 41 H 1.08992 * 109.47609 * 59.99758 * 11 10 8 42 42 H 1.07996 * 120.04491 * 0.02562 * 15 14 12 43 43 H 1.07993 * 119.84546 * 179.97438 * 16 15 14 44 44 H 1.07996 * 119.79726 * 179.97438 * 17 16 15 45 45 H 1.07994 * 119.96655 * 179.97438 * 18 17 16 46 46 H 0.96995 * 119.99695 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.2470 2.1083 0.3408 5 6 3.2420 1.5584 0.9394 6 7 2.4430 1.8180 -1.3575 7 6 1.7477 2.9030 -2.0544 8 6 2.4350 4.2112 -1.7594 9 8 3.4058 4.2350 -1.0405 10 8 1.9687 5.3501 -2.2955 11 6 2.6802 6.5726 -1.9676 12 6 3.4536 1.1653 -1.9651 13 8 3.4443 1.0196 -3.1723 14 6 4.5710 0.6278 -1.1657 15 6 4.3185 -0.0399 0.0346 16 6 5.3667 -0.5393 0.7772 17 6 6.6719 -0.3828 0.3386 18 6 6.9367 0.2749 -0.8456 19 6 5.8930 0.7790 -1.6098 20 8 6.1505 1.4197 -2.7759 21 6 7.4303 1.4287 -3.1997 22 1 8.1805 0.8662 -2.6638 23 6 7.7834 2.1602 -4.3239 24 7 6.8696 2.8447 -4.9769 25 14 9.5568 2.1732 -4.9106 26 1 10.3824 1.3291 -4.0101 27 1 9.6248 1.6347 -6.2930 28 1 10.0729 3.5655 -4.8959 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.1246 2.4376 1.5730 35 1 3.3030 0.6666 1.5631 36 1 4.1548 1.6536 0.3514 37 1 1.7671 2.7163 -3.1281 38 1 0.7138 2.9505 -1.7124 39 1 2.2008 7.4163 -2.4640 40 1 2.6597 6.7268 -0.8888 41 1 3.7140 6.4926 -2.3035 42 1 3.3031 -0.1649 0.3806 43 1 5.1701 -1.0551 1.7054 44 1 7.4869 -0.7772 0.9274 45 1 7.9566 0.3932 -1.1806 46 1 7.1166 3.3560 -5.7633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281472455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:06 Heat of formation + Delta-G solvation = -31.651387 kcal Electronic energy + Delta-G solvation = -31089.821516 eV Core-core repulsion = 26949.702524 eV Total energy + Delta-G solvation = -4140.118992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06229 -39.92640 -38.34484 -37.18869 -36.26377 -35.83202 -33.16693 -32.31677 -31.53483 -29.38836 -28.99139 -28.15452 -26.58547 -25.38440 -23.83468 -22.91394 -22.65956 -20.92942 -20.86919 -18.67627 -17.90413 -17.50670 -17.17475 -16.68406 -16.34667 -15.84502 -15.69803 -15.08539 -14.76553 -14.41278 -14.28107 -14.11624 -13.96729 -13.70487 -13.38902 -13.33054 -13.08598 -12.95165 -12.76670 -12.34143 -12.04865 -11.94199 -11.90181 -11.70929 -11.59790 -11.43297 -11.13607 -11.11490 -10.94389 -10.76726 -10.57453 -10.50747 -10.35506 -10.24107 -9.98470 -9.57530 -9.10562 -8.83524 -8.31598 -7.66782 -7.25699 -6.43893 -4.02570 1.83281 2.40540 2.50195 2.65619 3.13438 3.13715 3.19723 3.40170 3.46276 3.95781 4.51300 4.65728 4.86159 4.94092 5.00866 5.11057 5.13081 5.20393 5.23988 5.31148 5.34671 5.40693 5.53560 5.58763 5.61885 5.64299 5.67545 5.75676 5.89728 5.95755 5.98394 6.06055 6.13205 6.14390 6.24283 6.58454 6.61510 6.63561 6.73000 6.88855 6.98522 7.09353 7.30691 7.34001 7.74123 7.78014 7.98265 8.03852 8.77507 8.98919 9.69338 10.72165 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009812 B = 0.005355 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.851367 B = 5227.042383 C = 7061.685586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.148 3.852 4 H 0.086 0.914 5 C -0.208 4.208 6 N -0.621 5.621 7 C 0.134 3.866 8 C 0.433 3.567 9 O -0.483 6.483 10 O -0.365 6.365 11 C 0.037 3.963 12 C 0.593 3.407 13 O -0.497 6.497 14 C -0.253 4.253 15 C -0.033 4.033 16 C -0.256 4.256 17 C -0.043 4.043 18 C -0.248 4.248 19 C 0.200 3.800 20 O -0.146 6.146 21 C -0.396 4.396 22 H 0.094 0.906 23 C 0.043 3.957 24 N -0.845 5.845 25 Si 0.942 3.058 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.276 1.276 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.155 0.845 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.130 0.870 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 0.099 10.995 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.044 3.956 4 H 0.104 0.896 5 C -0.264 4.264 6 N -0.358 5.358 7 C 0.009 3.991 8 C 0.272 3.728 9 O -0.367 6.367 10 O -0.282 6.282 11 C -0.057 4.057 12 C 0.385 3.615 13 O -0.369 6.369 14 C -0.257 4.257 15 C -0.050 4.050 16 C -0.275 4.275 17 C -0.062 4.062 18 C -0.267 4.267 19 C 0.141 3.859 20 O -0.046 6.046 21 C -0.472 4.472 22 H 0.112 0.888 23 C -0.164 4.164 24 N -0.478 5.478 25 Si 0.766 3.234 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.172 0.828 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.148 0.852 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.483 0.337 10.113 15.305 hybrid contribution 1.252 0.414 -0.026 1.319 sum -10.231 0.751 10.088 14.387 Atomic orbital electron populations 1.21823 0.95144 1.01875 1.01760 1.22428 0.96684 0.96486 1.03238 1.21178 0.97116 0.95474 0.81790 0.89552 1.23831 1.01498 1.01114 0.99926 1.47436 1.36904 1.35110 1.16365 1.20727 0.95405 0.81385 1.01617 1.24741 0.83738 0.86552 0.77742 1.90716 1.24923 1.86672 1.34420 1.86465 1.56574 1.16460 1.68655 1.23195 0.97848 0.83412 1.01209 1.18114 0.80184 0.76344 0.86888 1.90792 1.76227 1.54621 1.15306 1.18632 0.90936 1.15854 1.00325 1.22122 1.01280 0.90685 0.90933 1.20395 0.92746 1.11474 1.02834 1.20868 0.96185 0.94666 0.94472 1.21076 0.99457 1.08250 0.97911 1.19199 0.91583 0.89400 0.85668 1.84037 1.29874 1.61279 1.29365 1.21461 0.83018 1.31148 1.11528 0.88848 1.25352 1.00038 0.95326 0.95644 1.70089 1.33214 1.27200 1.17321 0.85645 0.80279 0.78462 0.79020 1.18969 1.20006 1.20116 0.92553 0.92649 0.92497 0.90423 0.90115 0.93326 0.90732 0.86189 0.85623 0.86904 0.88448 0.92297 0.91690 0.82791 0.87275 0.87372 0.85244 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.66 37.16 0.36 -0.94 16 2 C -0.15 -1.68 4.33 -26.73 -0.12 -1.79 16 3 C 0.15 1.95 2.86 -67.93 -0.19 1.75 16 4 H 0.09 0.93 7.37 -51.93 -0.38 0.55 16 5 C -0.21 -3.00 7.70 37.16 0.29 -2.71 16 6 N -0.62 -10.63 1.89 -168.69 -0.32 -10.95 16 7 C 0.13 2.03 6.15 -5.19 -0.03 2.00 16 8 C 0.43 7.58 8.02 36.00 0.29 7.86 16 9 O -0.48 -10.18 16.18 -18.75 -0.30 -10.49 16 10 O -0.36 -5.61 10.57 -39.26 -0.41 -6.03 16 11 C 0.04 0.48 10.56 101.05 1.07 1.55 16 12 C 0.59 13.24 5.69 -12.47 -0.07 13.16 16 13 O -0.50 -13.22 16.11 -8.67 -0.14 -13.36 16 14 C -0.25 -5.63 4.20 -104.81 -0.44 -6.07 16 15 C -0.03 -0.57 4.84 -39.20 -0.19 -0.76 16 16 C -0.26 -4.26 9.75 -39.60 -0.39 -4.64 16 17 C -0.04 -0.79 10.03 -39.53 -0.40 -1.19 16 18 C -0.25 -5.54 9.12 -39.44 -0.36 -5.90 16 19 C 0.20 5.12 6.63 -38.60 -0.26 4.86 16 20 O -0.15 -4.42 8.63 -13.17 -0.11 -4.53 16 21 C -0.40 -11.51 9.44 30.90 0.29 -11.21 16 22 H 0.09 2.49 5.30 -52.49 -0.28 2.21 16 23 C 0.04 1.21 5.49 -17.51 -0.10 1.12 16 24 N -0.85 -25.85 13.67 55.48 0.76 -25.10 16 25 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.13 -51.92 -0.42 -0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.06 6.75 -51.93 -0.35 0.71 16 33 H 0.08 0.77 6.33 -51.93 -0.33 0.44 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.90 5.23 -51.93 -0.27 0.63 16 36 H 0.12 2.27 3.87 -64.96 -0.25 2.02 16 37 H 0.13 2.04 7.36 -51.93 -0.38 1.66 16 38 H 0.11 1.15 7.94 -51.93 -0.41 0.74 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 41 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 42 H 0.16 2.18 1.26 -52.55 -0.07 2.12 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.13 2.88 5.72 -52.49 -0.30 2.58 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -37.29 370.89 -6.17 -43.46 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.96 Total: 8.24 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.24 Total: -2.91 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.44 Total: -36.05 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.97 Total: -34.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.29 -6.17 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281472455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.811 kcal (2) G-P(sol) polarization free energy of solvation -37.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds