Wall clock time and date at job start Tue Mar 31 2020 19:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 H 1.09004 * 109.47167 * 19.36655 * 3 2 1 5 5 C 1.52997 * 109.46976 * 139.36494 * 3 2 1 6 6 N 1.46499 * 109.47197 * 259.36656 * 3 2 1 7 7 C 1.46505 * 119.99840 * 117.20971 * 6 3 2 8 8 C 1.50699 * 109.47187 * 89.99925 * 7 6 3 9 9 O 1.20827 * 119.99869 * 359.97438 * 8 7 6 10 10 O 1.34230 * 119.99693 * 179.97438 * 8 7 6 11 11 C 1.45200 * 116.99617 * 179.97438 * 10 8 7 12 12 C 1.34774 * 119.99860 * 297.20554 * 6 3 2 13 13 O 1.21593 * 119.99677 * 148.15393 * 12 6 3 14 14 C 1.47537 * 120.00122 * 328.14973 * 12 6 3 15 15 C 1.39660 * 120.19437 * 43.48977 * 14 12 6 16 16 C 1.37828 * 119.91946 * 180.02562 * 15 14 12 17 17 C 1.38582 * 120.32129 * 359.97438 * 16 15 14 18 18 C 1.38024 * 120.40214 * 0.02578 * 17 16 15 19 19 C 1.38834 * 120.07042 * 359.67246 * 18 17 16 20 20 O 1.35523 * 120.16253 * 180.30119 * 19 18 17 21 21 C 1.34814 * 116.99895 * 5.87518 * 20 19 18 22 22 H 1.07998 * 119.99771 * 5.42546 * 21 20 19 23 23 C 1.38697 * 119.99929 * 185.42295 * 21 20 19 24 24 N 1.31524 * 120.00065 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99777 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47534 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46874 * 119.99992 * 25 23 21 28 28 H 1.48500 * 109.47131 * 239.99816 * 25 23 21 29 29 H 1.08995 * 109.47525 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47211 * 299.99421 * 1 2 3 31 31 H 1.09002 * 109.47947 * 59.99452 * 1 2 3 32 32 H 1.09003 * 109.46794 * 240.00810 * 2 1 3 33 33 H 1.08996 * 109.47552 * 120.00357 * 2 1 3 34 34 H 1.08998 * 109.47188 * 226.36295 * 5 3 2 35 35 H 1.09003 * 109.47120 * 346.36365 * 5 3 2 36 36 H 1.08995 * 109.47111 * 106.35863 * 5 3 2 37 37 H 1.08998 * 109.46989 * 209.99754 * 7 6 3 38 38 H 1.08999 * 109.46854 * 329.99725 * 7 6 3 39 39 H 1.09000 * 109.47413 * 180.02562 * 11 10 8 40 40 H 1.09001 * 109.47285 * 299.99744 * 11 10 8 41 41 H 1.08992 * 109.47609 * 59.99758 * 11 10 8 42 42 H 1.07996 * 120.04491 * 0.02562 * 15 14 12 43 43 H 1.07993 * 119.84546 * 179.97438 * 16 15 14 44 44 H 1.07996 * 119.79726 * 179.97438 * 17 16 15 45 45 H 1.07994 * 119.96655 * 179.97438 * 18 17 16 46 46 H 0.96995 * 119.99695 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.2470 2.1083 0.3408 5 6 3.2420 1.5584 0.9394 6 7 2.4430 1.8180 -1.3575 7 6 1.7477 2.9030 -2.0544 8 6 2.4350 4.2112 -1.7594 9 8 3.4058 4.2350 -1.0405 10 8 1.9687 5.3501 -2.2955 11 6 2.6802 6.5726 -1.9676 12 6 3.4536 1.1653 -1.9651 13 8 3.4443 1.0196 -3.1723 14 6 4.5710 0.6278 -1.1657 15 6 4.3185 -0.0399 0.0346 16 6 5.3667 -0.5393 0.7772 17 6 6.6719 -0.3828 0.3386 18 6 6.9367 0.2749 -0.8456 19 6 5.8930 0.7790 -1.6098 20 8 6.1505 1.4197 -2.7759 21 6 7.4303 1.4287 -3.1997 22 1 8.1805 0.8662 -2.6638 23 6 7.7834 2.1602 -4.3239 24 7 6.8696 2.8447 -4.9769 25 14 9.5568 2.1732 -4.9106 26 1 10.3824 1.3291 -4.0101 27 1 9.6248 1.6347 -6.2930 28 1 10.0729 3.5655 -4.8959 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.1246 2.4376 1.5730 35 1 3.3030 0.6666 1.5631 36 1 4.1548 1.6536 0.3514 37 1 1.7671 2.7163 -3.1281 38 1 0.7138 2.9505 -1.7124 39 1 2.2008 7.4163 -2.4640 40 1 2.6597 6.7268 -0.8888 41 1 3.7140 6.4926 -2.3035 42 1 3.3031 -0.1649 0.3806 43 1 5.1701 -1.0551 1.7054 44 1 7.4869 -0.7772 0.9274 45 1 7.9566 0.3932 -1.1806 46 1 7.1166 3.3560 -5.7633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281472455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:06 Heat of formation + Delta-G solvation = -57.048011 kcal Electronic energy + Delta-G solvation = -31090.922796 eV Core-core repulsion = 26949.702524 eV Total energy + Delta-G solvation = -4141.220273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52785 -41.35269 -40.06755 -38.84128 -37.75519 -37.30646 -34.50074 -34.33499 -32.80980 -30.97949 -30.28256 -29.50576 -27.86694 -27.38502 -24.94368 -24.32386 -24.04663 -22.49823 -22.23947 -20.31598 -19.63845 -18.94164 -18.77165 -18.09737 -17.82273 -17.31518 -17.07194 -16.55759 -16.34669 -16.05704 -15.87626 -15.70741 -15.39822 -14.96624 -14.76110 -14.65282 -14.42895 -14.39328 -14.28723 -13.86508 -13.55236 -13.34002 -13.19924 -13.04749 -12.86684 -12.79990 -12.65809 -12.35253 -12.25297 -12.15605 -11.88844 -11.86497 -11.78229 -11.63117 -11.56647 -11.18359 -10.87055 -10.79465 -9.74035 -9.23170 -8.97483 -8.51054 -6.20359 0.21551 0.76880 1.09621 1.27576 1.28491 1.38727 1.47762 1.89526 2.10099 2.12484 2.79708 3.14112 3.41989 3.61011 3.72715 3.75832 3.91321 4.04647 4.14453 4.23189 4.24717 4.25256 4.26451 4.33069 4.44212 4.52321 4.60717 4.61316 4.70779 4.76440 4.82786 4.90984 4.99797 5.05582 5.13342 5.17332 5.24187 5.28010 5.41619 5.45041 5.48280 5.59167 5.65422 5.72907 5.93252 6.18008 6.32345 6.66151 6.90688 7.13503 7.74950 8.71721 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009812 B = 0.005355 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.851367 B = 5227.042383 C = 7061.685586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.138 3.862 4 H 0.122 0.878 5 C -0.209 4.209 6 N -0.612 5.612 7 C 0.129 3.871 8 C 0.432 3.568 9 O -0.527 6.527 10 O -0.361 6.361 11 C 0.032 3.968 12 C 0.588 3.412 13 O -0.560 6.560 14 C -0.266 4.266 15 C -0.020 4.020 16 C -0.229 4.229 17 C -0.035 4.035 18 C -0.273 4.273 19 C 0.153 3.847 20 O -0.211 6.211 21 C -0.419 4.419 22 H 0.103 0.897 23 C -0.024 4.024 24 N -0.915 5.915 25 Si 1.023 2.977 26 H -0.247 1.247 27 H -0.267 1.267 28 H -0.267 1.267 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.175 0.825 39 H 0.139 0.861 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.196 0.804 43 H 0.167 0.833 44 H 0.151 0.849 45 H 0.117 0.883 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -1.361 15.324 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C 0.037 3.963 4 H 0.140 0.860 5 C -0.265 4.265 6 N -0.348 5.348 7 C 0.004 3.996 8 C 0.273 3.727 9 O -0.415 6.415 10 O -0.277 6.277 11 C -0.062 4.062 12 C 0.380 3.620 13 O -0.438 6.438 14 C -0.271 4.271 15 C -0.037 4.037 16 C -0.247 4.247 17 C -0.053 4.053 18 C -0.292 4.292 19 C 0.100 3.900 20 O -0.115 6.115 21 C -0.495 4.495 22 H 0.121 0.879 23 C -0.222 4.222 24 N -0.552 5.552 25 Si 0.841 3.159 26 H -0.170 1.170 27 H -0.192 1.192 28 H -0.192 1.192 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.192 0.808 39 H 0.157 0.843 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.212 0.788 43 H 0.185 0.815 44 H 0.168 0.832 45 H 0.135 0.865 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.317 -1.140 14.542 19.751 hybrid contribution 1.549 0.788 -0.980 1.996 sum -11.768 -0.351 13.562 17.959 Atomic orbital electron populations 1.21800 0.92795 1.02856 1.02715 1.22424 0.98826 0.94514 1.03031 1.21651 0.97640 0.97874 0.79178 0.85991 1.23745 0.99590 1.03193 0.99926 1.47453 1.35227 1.34292 1.17794 1.21069 0.97844 0.79701 1.00938 1.25208 0.82998 0.87695 0.76755 1.90701 1.26729 1.87369 1.36739 1.86461 1.56399 1.16745 1.68102 1.23473 0.96696 0.83449 1.02534 1.18377 0.81154 0.76243 0.86193 1.90750 1.77751 1.57368 1.17900 1.19130 0.89883 1.16035 1.02005 1.22693 1.03893 0.88356 0.88769 1.21129 0.91385 1.08497 1.03730 1.21373 0.98632 0.92569 0.92696 1.21183 0.98237 1.10045 0.99779 1.19988 0.94060 0.90242 0.85740 1.84012 1.30297 1.64786 1.32394 1.21966 0.83457 1.31740 1.12348 0.87950 1.26738 1.05430 0.94606 0.95446 1.70267 1.36185 1.29953 1.18757 0.84493 0.73698 0.79035 0.78659 1.17020 1.19210 1.19183 0.91685 0.90271 0.92977 0.93330 0.87320 0.92469 0.87370 0.90878 0.87350 0.80822 0.84293 0.91133 0.94553 0.78845 0.81510 0.83153 0.86494 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.66 71.98 0.70 -1.14 16 2 C -0.15 -2.73 4.33 30.59 0.13 -2.59 16 3 C 0.14 3.19 2.86 44.99 0.13 3.32 16 4 H 0.12 2.01 7.37 -2.38 -0.02 1.99 16 5 C -0.21 -5.31 7.70 71.98 0.55 -4.75 16 6 N -0.61 -20.90 1.89 -805.87 -1.52 -22.43 16 7 C 0.13 3.91 6.15 85.63 0.53 4.44 16 8 C 0.43 15.47 8.02 71.24 0.57 16.04 16 9 O -0.53 -23.23 16.18 21.96 0.36 -22.87 16 10 O -0.36 -11.16 10.57 -51.42 -0.54 -11.71 16 11 C 0.03 0.82 10.56 113.37 1.20 2.02 16 12 C 0.59 27.65 5.69 86.70 0.49 28.14 16 13 O -0.56 -32.50 16.11 9.33 0.15 -32.35 16 14 C -0.27 -12.24 4.20 -19.99 -0.08 -12.32 16 15 C -0.02 -0.66 4.84 22.52 0.11 -0.55 16 16 C -0.23 -6.53 9.75 22.25 0.22 -6.31 16 17 C -0.03 -1.17 10.03 22.30 0.22 -0.95 16 18 C -0.27 -12.60 9.12 22.36 0.20 -12.40 16 19 C 0.15 8.39 6.63 22.91 0.15 8.55 16 20 O -0.21 -14.03 8.63 -6.75 -0.06 -14.09 16 21 C -0.42 -26.53 9.44 67.93 0.64 -25.89 16 22 H 0.10 5.91 5.30 -2.91 -0.02 5.90 16 23 C -0.02 -1.49 5.49 84.85 0.47 -1.03 16 24 N -0.91 -61.11 13.67 21.62 0.30 -60.81 16 25 Si 1.02 46.01 29.55 68.60 2.03 48.04 16 26 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.68 8.13 -2.38 -0.02 0.66 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.22 6.75 -2.39 -0.02 1.20 16 33 H 0.11 1.37 6.33 -2.39 -0.02 1.36 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 1.96 5.23 -2.39 -0.01 1.95 16 36 H 0.07 2.68 3.87 -14.63 -0.06 2.63 16 37 H 0.11 3.74 7.36 -2.39 -0.02 3.73 16 38 H 0.17 3.02 7.94 -2.39 -0.02 3.00 16 39 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 41 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 42 H 0.20 4.63 1.26 -2.97 0.00 4.63 16 43 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 44 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 45 H 0.12 5.52 5.72 -2.91 -0.02 5.51 16 46 H 0.27 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -97.53 370.89 7.91 -89.62 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.98 Total: 32.03 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 6.23 Total: -5.43 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.23 Total: -83.24 kcal Atomic # 8 Polarization: -80.93 SS G_CDS: -0.10 Total: -81.02 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -97.53 7.91 -89.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281472455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.572 kcal (2) G-P(sol) polarization free energy of solvation -97.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds