Wall clock time and date at job start Tue Mar 31 2020 19:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47069 * 2 1 4 4 H 1.09003 * 109.47167 * 54.99875 * 3 2 1 5 5 O 1.42901 * 109.46988 * 294.99651 * 3 2 1 6 6 C 1.53003 * 109.47087 * 174.99820 * 3 2 1 7 7 N 1.46493 * 109.47046 * 184.99779 * 6 3 2 8 8 C 1.34783 * 119.99988 * 179.97438 * 7 6 3 9 9 O 1.21717 * 119.99756 * 359.97438 * 8 7 6 10 10 C 1.46252 * 119.99994 * 179.97438 * 8 7 6 11 11 C 1.35029 * 120.00029 * 179.97438 * 10 8 7 12 12 C 1.46965 * 120.00017 * 180.02562 * 11 10 8 13 13 C 1.40025 * 120.07806 * 359.73095 * 12 11 10 14 14 C 1.37647 * 119.99703 * 179.69294 * 13 12 11 15 15 C 1.39059 * 120.16102 * 0.60430 * 14 13 12 16 16 O 1.35614 * 119.91832 * 179.69477 * 15 14 13 17 17 C 1.34756 * 117.00326 * 354.38159 * 16 15 14 18 18 H 1.08001 * 120.00266 * 5.05778 * 17 16 15 19 19 C 1.38714 * 119.99945 * 185.06606 * 17 16 15 20 20 N 1.31521 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99807 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46787 * 89.99757 * 21 19 17 23 23 H 1.48500 * 109.47133 * 209.99689 * 21 19 17 24 24 H 1.48499 * 109.46995 * 329.99712 * 21 19 17 25 25 C 1.39619 * 120.16047 * 359.67334 * 15 14 13 26 26 O 1.35952 * 120.00342 * 180.02562 * 25 15 14 27 27 C 1.42897 * 116.99956 * 179.97438 * 26 25 15 28 28 C 1.38084 * 119.99517 * 0.02562 * 25 15 14 29 29 H 1.08991 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46878 * 59.99841 * 1 2 3 31 31 H 1.08998 * 109.47218 * 300.00659 * 1 2 3 32 32 H 1.08997 * 109.47041 * 119.99878 * 2 1 3 33 33 H 1.08995 * 109.47460 * 239.99800 * 2 1 3 34 34 H 0.96695 * 114.00123 * 300.00136 * 5 3 2 35 35 H 1.09007 * 109.46840 * 305.00066 * 6 3 2 36 36 H 1.08998 * 109.46772 * 64.99777 * 6 3 2 37 37 H 0.96998 * 120.00034 * 0.02562 * 7 6 3 38 38 H 1.08003 * 119.99964 * 0.02562 * 10 8 7 39 39 H 1.08003 * 120.00007 * 0.02562 * 11 10 8 40 40 H 1.08003 * 120.00234 * 359.97438 * 13 12 11 41 41 H 1.08005 * 119.92138 * 180.29931 * 14 13 12 42 42 H 0.97000 * 119.99890 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47291 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.47107 * 300.00236 * 27 26 25 45 45 H 1.09004 * 109.47225 * 59.99924 * 27 26 25 46 46 H 1.07999 * 120.07990 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5649 1.4444 0.1258 7 7 4.0432 2.8238 0.2458 8 6 5.3624 3.0712 0.3695 9 8 6.1561 2.1485 0.3819 10 6 5.8400 4.4484 0.4887 11 6 7.1615 4.6963 0.6132 12 6 7.6415 6.0801 0.7336 13 6 6.7303 7.1432 0.7138 14 6 7.1810 8.4382 0.8330 15 6 8.5416 8.6955 0.9607 16 8 8.9808 9.9737 1.0716 17 6 8.0625 10.9503 0.9344 18 1 7.0179 10.6981 0.8267 19 6 8.4588 12.2796 0.9313 20 7 9.7309 12.5869 1.0628 21 14 7.1858 13.6334 0.7404 22 1 6.6928 14.0417 2.0803 23 1 7.8035 14.8017 0.0630 24 1 6.0494 13.1328 -0.0740 25 6 9.4566 7.6410 0.9754 26 8 10.7860 7.8961 1.1009 27 6 11.6649 6.7694 1.1090 28 6 9.0111 6.3389 0.8625 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0142 1.6542 -2.0139 35 1 3.8570 0.8800 1.0114 36 1 4.0029 0.9836 -0.7596 37 1 3.4106 3.5590 0.2370 38 1 5.1357 5.2671 0.4781 39 1 7.8658 3.8776 0.6242 40 1 5.6734 6.9467 0.6095 41 1 6.4767 9.2570 0.8225 42 1 10.0080 13.5165 1.0610 43 1 12.6941 7.1122 1.2150 44 1 11.4116 6.1170 1.9447 45 1 11.5592 6.2194 0.1738 46 1 9.7176 5.5222 0.8733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292474171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:22 Heat of formation + Delta-G solvation = -119.201451 kcal Electronic energy + Delta-G solvation = -27272.392413 eV Core-core repulsion = 23128.476965 eV Total energy + Delta-G solvation = -4143.915448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.85126 -39.60718 -38.25512 -37.67748 -36.55822 -34.38629 -33.24679 -33.03942 -32.24616 -29.78904 -29.32965 -28.29517 -26.55059 -25.57563 -24.34724 -22.81612 -22.00245 -21.76609 -20.79423 -19.29952 -18.21759 -17.75689 -17.30453 -16.72531 -16.59445 -16.12737 -15.49327 -15.30475 -15.21254 -14.97424 -14.80252 -14.63262 -14.06523 -13.98599 -13.80602 -13.59643 -13.57678 -13.44417 -12.74583 -12.55525 -12.39644 -12.36999 -12.15504 -11.80759 -11.71601 -11.45812 -11.45500 -11.27530 -11.11808 -11.03916 -10.79077 -10.70129 -10.51379 -10.50162 -9.81173 -9.58681 -9.43835 -9.16341 -8.83035 -7.98849 -6.91916 -6.62201 -4.13448 1.01691 2.10860 2.52845 3.04828 3.05934 3.10875 3.13647 3.56110 3.82804 3.93653 3.95621 4.22021 4.46289 4.46696 4.55094 4.89023 4.89664 4.93602 5.00743 5.06169 5.22266 5.24378 5.34362 5.39767 5.47291 5.49773 5.54000 5.57839 5.62217 5.71362 5.72832 5.80740 5.82785 5.99429 6.20103 6.31872 6.41497 6.46985 6.58404 6.83958 7.00182 7.08339 7.17471 7.25596 7.46463 7.54049 7.78309 8.07127 8.32119 8.80873 9.49702 10.53567 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002028 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.308653 B =13805.348173 C =15728.332434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.094 3.906 4 H 0.106 0.894 5 O -0.557 6.557 6 C 0.089 3.911 7 N -0.729 5.729 8 C 0.555 3.445 9 O -0.562 6.562 10 C -0.278 4.278 11 C 0.036 3.964 12 C -0.167 4.167 13 C -0.059 4.059 14 C -0.225 4.225 15 C 0.149 3.851 16 O -0.147 6.147 17 C -0.391 4.391 18 H 0.098 0.902 19 C 0.041 3.959 20 N -0.844 5.844 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.265 1.265 25 C 0.052 3.948 26 O -0.303 6.303 27 C 0.030 3.970 28 C -0.136 4.136 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.377 0.623 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.274 0.726 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 -18.971 -2.002 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.192 4.192 3 C 0.035 3.965 4 H 0.123 0.877 5 O -0.363 6.363 6 C -0.036 4.036 7 N -0.381 5.381 8 C 0.347 3.653 9 O -0.443 6.443 10 C -0.299 4.299 11 C 0.016 3.984 12 C -0.168 4.168 13 C -0.077 4.077 14 C -0.245 4.245 15 C 0.092 3.908 16 O -0.048 6.048 17 C -0.466 4.466 18 H 0.115 0.885 19 C -0.166 4.166 20 N -0.476 5.476 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.189 1.189 25 C 0.007 3.993 26 O -0.217 6.217 27 C -0.066 4.066 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.224 0.776 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.840 -18.685 -1.512 22.172 hybrid contribution -0.617 0.266 -0.423 0.794 sum -12.457 -18.419 -1.935 22.319 Atomic orbital electron populations 1.21696 0.94710 1.01647 1.02551 1.22160 0.97415 0.96383 1.03244 1.22241 0.92196 0.93751 0.88323 0.87669 1.86597 1.76814 1.57281 1.15590 1.22016 0.94292 0.84515 1.02740 1.45751 1.07905 1.08387 1.76044 1.18433 0.81595 0.89897 0.75378 1.90768 1.54971 1.46770 1.51777 1.22451 0.97174 0.94520 1.15802 1.22231 0.95061 0.94959 0.86159 1.18168 0.92592 0.91840 1.14227 1.20938 0.98256 0.91619 0.96915 1.20837 0.94316 0.97344 1.11958 1.18885 0.90823 0.85273 0.95848 1.83986 1.36848 1.09792 1.74170 1.21522 0.89336 0.84304 1.51457 0.88499 1.25420 0.97428 0.97574 0.96145 1.70048 1.14893 1.19700 1.42990 0.85646 0.79216 0.79267 0.78975 1.19626 1.20051 1.18908 1.18043 0.82700 0.91498 1.07099 1.86234 1.13715 1.32730 1.89057 1.22918 0.93804 0.89410 1.00447 1.20883 0.95566 0.94073 1.05031 0.92678 0.91958 0.92630 0.90679 0.91278 0.77578 0.90834 0.91429 0.76104 0.85740 0.86021 0.86575 0.84494 0.91582 0.88962 0.93456 0.93432 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.81 37.16 0.36 -0.40 16 2 C -0.15 -0.77 5.61 -26.73 -0.15 -0.92 16 3 C 0.09 0.59 3.00 -26.73 -0.08 0.51 16 4 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 5 O -0.56 -3.94 12.82 -35.23 -0.45 -4.39 16 6 C 0.09 0.75 5.31 -4.04 -0.02 0.73 16 7 N -0.73 -7.58 5.50 -61.76 -0.34 -7.92 16 8 C 0.55 7.82 7.74 -13.04 -0.10 7.72 16 9 O -0.56 -9.79 16.23 5.17 0.08 -9.70 16 10 C -0.28 -3.87 9.41 -37.50 -0.35 -4.22 16 11 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 12 C -0.17 -2.90 5.87 -105.04 -0.62 -3.52 16 13 C -0.06 -1.04 9.40 -39.13 -0.37 -1.41 16 14 C -0.22 -4.66 9.14 -39.49 -0.36 -5.02 16 15 C 0.15 3.54 6.67 -38.76 -0.26 3.29 16 16 O -0.15 -4.13 9.52 -13.93 -0.13 -4.26 16 17 C -0.39 -10.48 9.48 30.91 0.29 -10.19 16 18 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.84 -23.97 13.67 55.48 0.76 -23.21 16 21 Si 0.95 19.53 29.55 -169.99 -5.02 14.51 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C 0.05 1.11 6.70 -39.12 -0.26 0.85 16 26 O -0.30 -6.48 10.28 -34.20 -0.35 -6.84 16 27 C 0.03 0.44 9.81 101.05 0.99 1.43 16 28 C -0.14 -2.47 8.77 -38.99 -0.34 -2.81 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.36 7.82 -51.92 -0.41 -0.05 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.38 1.64 9.04 45.56 0.41 2.05 16 35 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 3.52 8.45 -40.82 -0.34 3.17 16 38 H 0.12 1.51 6.06 -52.48 -0.32 1.19 16 39 H 0.12 1.85 7.52 -52.48 -0.39 1.45 16 40 H 0.12 1.69 6.15 -52.48 -0.32 1.37 16 41 H 0.14 2.75 5.62 -52.48 -0.29 2.46 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 45 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 46 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -33.52 391.46 -6.85 -40.37 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.58 Total: 8.30 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.71 Total: -12.76 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.42 Total: -31.13 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.85 Total: -25.19 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.52 -6.85 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292474171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.829 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds