Wall clock time and date at job start Tue Mar 31 2020 19:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47069 * 2 1 4 4 H 1.09003 * 109.47167 * 54.99875 * 3 2 1 5 5 O 1.42901 * 109.46988 * 294.99651 * 3 2 1 6 6 C 1.53003 * 109.47087 * 174.99820 * 3 2 1 7 7 N 1.46493 * 109.47046 * 184.99779 * 6 3 2 8 8 C 1.34783 * 119.99988 * 179.97438 * 7 6 3 9 9 O 1.21717 * 119.99756 * 359.97438 * 8 7 6 10 10 C 1.46252 * 119.99994 * 179.97438 * 8 7 6 11 11 C 1.35029 * 120.00029 * 179.97438 * 10 8 7 12 12 C 1.46965 * 120.00017 * 180.02562 * 11 10 8 13 13 C 1.40025 * 120.07806 * 359.73095 * 12 11 10 14 14 C 1.37647 * 119.99703 * 179.69294 * 13 12 11 15 15 C 1.39059 * 120.16102 * 0.60430 * 14 13 12 16 16 O 1.35614 * 119.91832 * 179.69477 * 15 14 13 17 17 C 1.34756 * 117.00326 * 354.38159 * 16 15 14 18 18 H 1.08001 * 120.00266 * 5.05778 * 17 16 15 19 19 C 1.38714 * 119.99945 * 185.06606 * 17 16 15 20 20 N 1.31521 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99807 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46787 * 89.99757 * 21 19 17 23 23 H 1.48500 * 109.47133 * 209.99689 * 21 19 17 24 24 H 1.48499 * 109.46995 * 329.99712 * 21 19 17 25 25 C 1.39619 * 120.16047 * 359.67334 * 15 14 13 26 26 O 1.35952 * 120.00342 * 180.02562 * 25 15 14 27 27 C 1.42897 * 116.99956 * 179.97438 * 26 25 15 28 28 C 1.38084 * 119.99517 * 0.02562 * 25 15 14 29 29 H 1.08991 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46878 * 59.99841 * 1 2 3 31 31 H 1.08998 * 109.47218 * 300.00659 * 1 2 3 32 32 H 1.08997 * 109.47041 * 119.99878 * 2 1 3 33 33 H 1.08995 * 109.47460 * 239.99800 * 2 1 3 34 34 H 0.96695 * 114.00123 * 300.00136 * 5 3 2 35 35 H 1.09007 * 109.46840 * 305.00066 * 6 3 2 36 36 H 1.08998 * 109.46772 * 64.99777 * 6 3 2 37 37 H 0.96998 * 120.00034 * 0.02562 * 7 6 3 38 38 H 1.08003 * 119.99964 * 0.02562 * 10 8 7 39 39 H 1.08003 * 120.00007 * 0.02562 * 11 10 8 40 40 H 1.08003 * 120.00234 * 359.97438 * 13 12 11 41 41 H 1.08005 * 119.92138 * 180.29931 * 14 13 12 42 42 H 0.97000 * 119.99890 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47291 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.47107 * 300.00236 * 27 26 25 45 45 H 1.09004 * 109.47225 * 59.99924 * 27 26 25 46 46 H 1.07999 * 120.07990 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5649 1.4444 0.1258 7 7 4.0432 2.8238 0.2458 8 6 5.3624 3.0712 0.3695 9 8 6.1561 2.1485 0.3819 10 6 5.8400 4.4484 0.4887 11 6 7.1615 4.6963 0.6132 12 6 7.6415 6.0801 0.7336 13 6 6.7303 7.1432 0.7138 14 6 7.1810 8.4382 0.8330 15 6 8.5416 8.6955 0.9607 16 8 8.9808 9.9737 1.0716 17 6 8.0625 10.9503 0.9344 18 1 7.0179 10.6981 0.8267 19 6 8.4588 12.2796 0.9313 20 7 9.7309 12.5869 1.0628 21 14 7.1858 13.6334 0.7404 22 1 6.6928 14.0417 2.0803 23 1 7.8035 14.8017 0.0630 24 1 6.0494 13.1328 -0.0740 25 6 9.4566 7.6410 0.9754 26 8 10.7860 7.8961 1.1009 27 6 11.6649 6.7694 1.1090 28 6 9.0111 6.3389 0.8625 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0142 1.6542 -2.0139 35 1 3.8570 0.8800 1.0114 36 1 4.0029 0.9836 -0.7596 37 1 3.4106 3.5590 0.2370 38 1 5.1357 5.2671 0.4781 39 1 7.8658 3.8776 0.6242 40 1 5.6734 6.9467 0.6095 41 1 6.4767 9.2570 0.8225 42 1 10.0080 13.5165 1.0610 43 1 12.6941 7.1122 1.2150 44 1 11.4116 6.1170 1.9447 45 1 11.5592 6.2194 0.1738 46 1 9.7176 5.5222 0.8733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292474171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:21 Heat of formation + Delta-G solvation = -144.389176 kcal Electronic energy + Delta-G solvation = -27273.484635 eV Core-core repulsion = 23128.476965 eV Total energy + Delta-G solvation = -4145.007670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32873 -40.74510 -39.31727 -38.93943 -38.06366 -35.31010 -34.62818 -33.91206 -33.68037 -31.30308 -30.47803 -29.34238 -27.84127 -27.35059 -25.32180 -23.89616 -23.30487 -22.54575 -22.01283 -20.48831 -19.94342 -19.32263 -18.38618 -17.75549 -17.37354 -17.17510 -16.97449 -16.68337 -16.34747 -16.24470 -15.83300 -15.69291 -15.57066 -15.28156 -15.11469 -15.00393 -14.67996 -14.38053 -13.91534 -13.65926 -13.45606 -13.28608 -13.22555 -13.00565 -12.88900 -12.86217 -12.68739 -12.49475 -12.16324 -12.13059 -12.01802 -11.84029 -11.75605 -11.35697 -11.19258 -10.99368 -10.80723 -10.53617 -10.08922 -9.47869 -8.53556 -8.47149 -6.11631 -0.31580 0.54098 1.10361 1.37271 1.47858 1.55358 2.17288 2.23485 2.34486 2.55041 2.86206 3.14167 3.35358 3.47333 3.65931 3.74095 3.92144 4.00386 4.10015 4.13873 4.24594 4.32292 4.37632 4.38980 4.41870 4.51921 4.58472 4.62467 4.70125 4.71049 4.86027 4.89830 4.91220 5.07396 5.10939 5.13167 5.28222 5.28862 5.42070 5.43091 5.48306 5.51242 5.77316 5.91748 5.97686 6.57053 6.59304 6.79445 6.95322 7.26059 7.75394 8.74524 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002028 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.308653 B =13805.348173 C =15728.332434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.105 3.895 4 H 0.107 0.893 5 O -0.570 6.570 6 C 0.087 3.913 7 N -0.712 5.712 8 C 0.549 3.451 9 O -0.595 6.595 10 C -0.239 4.239 11 C 0.012 3.988 12 C -0.133 4.133 13 C -0.066 4.066 14 C -0.218 4.218 15 C 0.101 3.899 16 O -0.212 6.212 17 C -0.416 4.416 18 H 0.110 0.890 19 C -0.022 4.022 20 N -0.914 5.914 21 Si 1.021 2.979 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.248 1.248 25 C 0.038 3.962 26 O -0.344 6.344 27 C 0.020 3.980 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.388 0.612 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.150 0.850 39 H 0.127 0.873 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.273 0.727 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 -22.355 -2.524 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.189 4.189 3 C 0.046 3.954 4 H 0.125 0.875 5 O -0.377 6.377 6 C -0.037 4.037 7 N -0.363 5.363 8 C 0.340 3.660 9 O -0.478 6.478 10 C -0.260 4.260 11 C -0.007 4.007 12 C -0.134 4.134 13 C -0.084 4.084 14 C -0.237 4.237 15 C 0.049 3.951 16 O -0.117 6.117 17 C -0.491 4.491 18 H 0.127 0.873 19 C -0.221 4.221 20 N -0.551 5.551 21 Si 0.840 3.160 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.171 1.171 25 C -0.007 4.007 26 O -0.259 6.259 27 C -0.074 4.074 28 C -0.153 4.153 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.168 0.832 39 H 0.145 0.855 40 H 0.174 0.826 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.151 -22.161 -2.048 26.924 hybrid contribution 0.196 0.569 -0.313 0.679 sum -14.956 -21.592 -2.361 26.371 Atomic orbital electron populations 1.21685 0.94743 1.01962 1.02152 1.22133 0.97261 0.95576 1.03898 1.22150 0.90407 0.94566 0.88273 0.87472 1.86576 1.77006 1.57867 1.16293 1.22177 0.95797 0.83159 1.02571 1.45702 1.06898 1.09865 1.73811 1.18510 0.82531 0.89483 0.75489 1.90773 1.56119 1.47649 1.53306 1.22809 0.97068 0.95368 1.10752 1.22129 0.96025 0.93630 0.88958 1.18539 0.92255 0.92992 1.09645 1.21295 1.00388 0.90121 0.96575 1.21040 0.93181 0.98928 1.10598 1.19583 0.92855 0.84985 0.97672 1.83974 1.37933 1.11220 1.78610 1.21989 0.89982 0.84933 1.52207 0.87266 1.26692 0.99667 0.99990 0.95728 1.70206 1.17485 1.19962 1.47406 0.84552 0.76556 0.75550 0.79337 1.18735 1.19853 1.17145 1.18375 0.82953 0.92187 1.07164 1.86188 1.14276 1.36210 1.89220 1.23279 0.93604 0.88449 1.02108 1.21259 0.96780 0.93485 1.03748 0.92065 0.92609 0.92761 0.90161 0.90568 0.76257 0.91058 0.91575 0.74750 0.83209 0.85499 0.82559 0.84513 0.91756 0.87212 0.91585 0.91644 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.81 71.98 0.71 -0.45 16 2 C -0.15 -1.07 5.61 30.60 0.17 -0.90 16 3 C 0.11 0.98 3.00 30.60 0.09 1.07 16 4 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 5 O -0.57 -6.19 12.82 -148.98 -1.91 -8.10 16 6 C 0.09 1.18 5.31 86.38 0.46 1.64 16 7 N -0.71 -11.87 5.50 -467.50 -2.57 -14.44 16 8 C 0.55 13.21 7.74 86.32 0.67 13.88 16 9 O -0.59 -18.81 16.23 -4.40 -0.07 -18.88 16 10 C -0.24 -5.46 9.41 23.62 0.22 -5.24 16 11 C 0.01 0.33 9.45 23.82 0.23 0.56 16 12 C -0.13 -4.20 5.87 -20.14 -0.12 -4.32 16 13 C -0.07 -2.13 9.40 22.56 0.21 -1.92 16 14 C -0.22 -9.03 9.14 22.33 0.20 -8.82 16 15 C 0.10 5.05 6.67 22.80 0.15 5.20 16 16 O -0.21 -12.83 9.52 -6.52 -0.06 -12.89 16 17 C -0.42 -23.73 9.48 67.93 0.64 -23.09 16 18 H 0.11 5.56 5.18 -2.91 -0.02 5.54 16 19 C -0.02 -1.25 5.49 84.85 0.47 -0.78 16 20 N -0.91 -56.02 13.67 21.62 0.30 -55.72 16 21 Si 1.02 41.80 29.55 68.60 2.03 43.83 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 25 C 0.04 1.68 6.70 22.57 0.15 1.83 16 26 O -0.34 -15.25 10.28 -79.03 -0.81 -16.06 16 27 C 0.02 0.58 9.81 113.37 1.11 1.69 16 28 C -0.13 -4.60 8.77 22.65 0.20 -4.41 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.51 7.82 -2.38 -0.02 0.50 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.39 2.17 9.04 -74.06 -0.67 1.50 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.42 5.26 8.45 -92.71 -0.78 4.48 16 38 H 0.15 2.68 6.06 -2.91 -0.02 2.66 16 39 H 0.13 3.36 7.52 -2.91 -0.02 3.33 16 40 H 0.16 3.74 6.15 -2.91 -0.02 3.72 16 41 H 0.14 5.55 5.62 -2.91 -0.02 5.54 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 45 H 0.07 1.62 7.66 -2.38 -0.02 1.60 16 46 H 0.16 4.25 6.28 -2.91 -0.02 4.23 16 Total: -1.00 -79.98 391.46 2.04 -77.94 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.42 Total: 28.41 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 5.57 Total: -24.07 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -2.27 Total: -70.16 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -2.86 Total: -55.94 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -79.98 2.04 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292474171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.453 kcal (2) G-P(sol) polarization free energy of solvation -79.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds